BAC Information

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BAC

Clone NameB6Ng01-019I07
Chromosome11 (Build37)
Map Location 114,857,733 - 114,858,789
singlet/doubletsinglet
Overlap geneCd300d
Upstream geneSdk2, LOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik
Downstream geneLOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019I07.bB6Ng01-019I07.g
ACCDH852582DH852583
length1,0601,047
definitionDH852582|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I07, 5' end.DH852583|Mus musculus domesticus DNA, BAC clone: B6Ng01-019I07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatttacatgtgtgtttagctatgcagctttatcctacacatgca
tccaggtaacgaccatcacagtcaaaacagaggattgttccaccatcaca
agtcctccttcatgccagtctgcctcattactgcccactagagaacactg
atctctggctgactctggctctgtcactttgagaatgttctagaaagaga
agcatttcagtggtatgtcaagtacaaggcctctgggatccacacaagca
gatgttcttggaaatcatccattcctctttattactgagcattattcatt
gtatacattcattacagtttgtttaactccttattcagttaactatttgg
gtcatttccattacaaataaaactattatccacattttgtctgttttttt
ttatacgattctgcatttttatgtctccagggtgtatgcttgcacaaaga
ttaagttatatagtaagtatatgtttagttttctaagaaataatccaatt
atttctgttgtggtgacgtcatattttttccatcagctaaggatggaaga
actgggtttttgtggttttgtttatttgcttgctttttgagttttttttt
ctccattgtcattatttctttaaaggaatttagatttctttgaaagaaat
ctaaattcagaagtgctttgtctgcacctgtgtctgcacaccatatgtat
gcatgcatgcctggtgccttggaggtcagaagagagcattggattcctgg
aactggagttaggggtggtcttgagcctccatgtgagtgctgggaactga
gtctggatcctgtctgagagcatcaagcactcttctctatggaggcctgt
ctcatctgataggcacgtggtcctgagttcccaagtgactgatgagattg
caaatatttctggtgtgtttcacttctgcccacacatcatccttgacgca
tatctgttttgtgtcttctatttatttctgaactgagccatttttgaaat
ttgttacattttttcactagtggtgtacatgaactatcgttggtcacagt
gcaagatagt
gaattccagagccagagttagaggaggaaagtgccctgaatgctgtgttc
tgtgtgtggccttgtctctcaatcatgagctcacggcagctgtggttacc
acacaagaccaagtcagcaaaatcagttagctaattatgtatatggctgt
tccatctgaatggacacctgcatgccagaagagggcatcagagctcttta
cagatggttgtgagtcaccttgtggttactgggaatctaactcaggacct
ctaaaagagtagccagtactcttaacctttgagccatctatctagactga
agtcatttaaatatataggtatttatttggtaaattcatttatgtgtttg
atacaccacagagaatcttctaaaagtctcagagcattctcaagaaatat
gtatttactggctgtcctcagccaccagaggagctgtgtttagggacagg
gccttgatgtcaacagacttcactggttctcataacagggccgagagctg
cttcccccagagcacctctgaggcctgttcacccagaggacagcaccaag
catgctcaggaacaggaacaacttcagagacaccaggacccagaagtaga
ggctgctccgaagagacctgtaagggacagagtcacaataagctcacttc
ccagaaggtgacaataatgccctgtgctatgtgactgtcccgtatccagg
tctgtgtccacagagatatatgcaaggacaaggacaaggacaaggactgc
ctgaatgaccagtgtgattaatacagagcccaagaggtagccttaacctg
taaggcctgaccaagcccacgggcttctcccctataccctctaaccaggt
aggaacagcctccccaaccacacccaattctctttctactagacccctcc
actttctccagggtggcattatttatttattattatttatttatttataa
tattattagccctagctgtcctggaactcaataatgcaaccaacagggcc
ttgaactcataaagattcttctggcttgtgcattcacccagggctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_114857733_114858789
seq2: B6Ng01-019I07.g_67_1113

seq1  GAATTCCAGAGCCAGAGTTAGAGGAGGAAAGTGCCCTGAATGCTGTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCCAGAGTTAGAGGAGGAAAGTGCCCTGAATGCTGTGTTC  50

seq1  TGTGTGTGGCCTTGTCTCTCAATCATGAGCTCACGGCAGCTGTGGTTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGGCCTTGTCTCTCAATCATGAGCTCACGGCAGCTGTGGTTACC  100

seq1  ACACAAGACCAAGTCAGCAAAATCAGTTAGCTAATTATGTATATGGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGACCAAGTCAGCAAAATCAGTTAGCTAATTATGTATATGGCTGT  150

seq1  TCCATCTGAATGGACACCTGCATGCCAGAAGAGGGCATCAGAGCTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGAATGGACACCTGCATGCCAGAAGAGGGCATCAGAGCTCTTTA  200

seq1  CAGATGGTTGTGAGTCACCTTGTGGTTACTGGGAATCTAACTCAGGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGTTGTGAGTCACCTTGTGGTTACTGGGAATCTAACTCAGGACCT  250

seq1  CTAAAAGAGTAGCCAGTACTCTTAACCTTTGAGCCATCTATCTAGACTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAGTAGCCAGTACTCTTAACCTTTGAGCCATCTATCTAGACTGA  300

seq1  AGTCATTTAAATATATAGGTATTTATTTGGTAAATTCATTTATGTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTAAATATATAGGTATTTATTTGGTAAATTCATTTATGTGTTTG  350

seq1  ATACACCACAGAGAATCTTCTAAAAGTCTCAGAGCATTCTCAAGAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACCACAGAGAATCTTCTAAAAGTCTCAGAGCATTCTCAAGAAATAT  400

seq1  GTATTTACTGGCTGTCCTCAGCCACCAGAGGAGCTGTGTTTAGGGACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTACTGGCTGTCCTCAGCCACCAGAGGAGCTGTGTTTAGGGACAGG  450

seq1  GCCTTGATGTCAACAGACTTCACTGGTTCTCATAACAGGGCCGAGAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGATGTCAACAGACTTCACTGGTTCTCATAACAGGGCCGAGAGCTG  500

seq1  CTTCCCCCAGAGCACCTCTGAGGCCTGTTCACCCAGAGGACAGCACCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCCCAGAGCACCTCTGAGGCCTGTTCACCCAGAGGACAGCACCAAG  550

seq1  CATGCTCAGGAACAGGAACAACTTCAGAGACACCAGGACCCAGAAGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTCAGGAACAGGAACAACTTCAGAGACACCAGGACCCAGAAGTAGA  600

seq1  GGCTGCTCCGAAGAGACCTGTAAGGGACAGAGTCACAATAAGCTCACTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTCCGAAGAGACCTGTAAGGGACAGAGTCACAATAAGCTCACTTC  650

seq1  CCAGAAGGTGACAATAATGCCCTGTGCTATGTGACTGTCCCGTATCCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGTGACAATAATGCCCTGTGCTATGTGACTGTCCCGTATCCAGG  700

seq1  TCTGTGTCCACAGAGATATATGCAAGGACAAGGACAAGGACAAGGACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTCCACAGAGATATATGCAAGGACAAGGACAAGGACAAGGACTGC  750

seq1  CTGAATGACCAGTGTGATTAATACAGAGCCCAAGAGGTAGCCTTAACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGACCAGTGTGATTAATACAGAGCCCAAGAGGTAGCCTTAACCTG  800

seq1  TAAGGCCTGACCAAGCCCACGGGCTTCTCCCCCTATACCCTCTAACCAGG  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAGGCCTGACCAAGCCCACGGGCTTCT-CCCCTATACCCTCTAACCAGG  849

seq1  TAGGAACAGCCTCCCCAACCCACACCCAATTCTCTTCCTACTAGACCCCT  900
      |||||||||||||||||| ||||||||||||||||| |||||||||||||
seq2  TAGGAACAGCCTCCCCAA-CCACACCCAATTCTCTTTCTACTAGACCCCT  898

seq1  CCAACTTTCTCCAGGGTGGCATTATTTATTTATTTATTTATTTATTTATT  950
      || |||||||||||||||||||||||||||||||   |||||||||||||
seq2  CC-ACTTTCTCCAGGGTGGCATTATTTATTTATT--ATTATTTATTTATT  945

seq1  TATTAATATTATGTAGCCCTAGCTGTCCTGGAACTC-ATTATGCAAACCA  999
      || ||||||||| ||||||||||||||||||||||| || |||| |||||
seq2  TA-TAATATTAT-TAGCCCTAGCTGTCCTGGAACTCAATAATGC-AACCA  992

seq1  ACAGGGCCTTGAACTCATAGAGATTCATCTGGCTTGTGCCATCACACCCA  1049
      ||||||||||||||||||| |||||| ||||||||||||  |  ||||||
seq2  ACAGGGCCTTGAACTCATAAAGATTCTTCTGGCTTGTGCATT--CACCCA  1040

seq1  GTGGCTTA  1057
      | ||||||
seq2  G-GGCTTA  1047