BAC Information

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BAC

Clone NameB6Ng01-019O02
Chromosome11 (Build37)13 (Build37)
Map Location 14,087,612 - 14,088,4783,168,166 - 3,168,205
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC432535
Downstream gene1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-019O02.bB6Ng01-019O02.g
ACCDH852836DH852837
length925400
definitionDH852836|Mus musculus domesticus DNA, BAC clone: B6Ng01-019O02, 5' end.DH852837|Mus musculus domesticus DNA, BAC clone: B6Ng01-019O02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(14,087,612 - 14,088,478)(3,168,166 - 3,168,205)
sequence
gaattctatcagcaaaggtacaactttttattttctctacattttctttt
gctaacaaccaaaattccaaggaattttgcactaacactgaatttatatg
gagctggcaggcctctcagttttttctctggagaactcctgcctcttttg
cagctgcttgcagactgccctggctgaccctcactcagaaggcaaggcat
tctattatccttttctccatctcttactcttgggagcctccgagatttac
agctcgcctgccctcttgtttttctctccaacattaataaaatgatcccc
cagtgtccttttgagtatatgtaaaaatgatgttatcagtgaggataaga
acccataccaaggaatcctgaaccccagcattatgtgtatcacaatcttt
ttacatattcacttactggggaacatttagggttgttccatttcctgtct
cttgtgaatagtactggaaaagaaataatggtgtgagtacctctgttatg
tgacatagaatcttttgggtatattgcagtagagttatgactgtataatc
tgccagatgtattttcatagttttgagaaccctcctttctaattttcatg
gcagacttataattcaactaggtgagaataaggcttctacgtccccaaat
ctttaccagcaatttgattttgcttctttttatgataactatatgactat
gggaagatggaatgttaagtcatttttattttgcatacccttaatggcta
aaaactgttgaaatacttttccaattatttaaggaccatttgtgtttctc
tttctttctttttttttcttttctttctttcgtttgtggagtttcagggt
tctttacttctttataaaatctatatatctttctcctgcgtgaaatattg
gtttaagaagatttctcccaatttt
tttgtttagctctgtgcctgattttttaatggagttatttgattttctgg
agtccagatttttgagttctttctatacattggatattattcccctatca
gatttatgattgtaaaaattcctttcccaatctgttagtgacgtttttat
cttatttacagtgtcttacagaagctttgcaattttaagagtccccgttt
gtccattccagatcttaaagcacaagccattgctgttctgttcaggaata
tttcccctgtgcccatattttcgaggctttttgccactttatcctttatg
tgttttagtggctctggttttatgtgacgttcctagatccactttgactt
gagctttgttcaaggagataagaatggagcaattcgaattcttctacatg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_14087612_14088478
seq2: B6Ng01-019O02.b_43_917

seq1  GAATTCTATCAGCAAAGGTACAACTTTTTATTTTCTCTACATTTTCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCAGCAAAGGTACAACTTTTTATTTTCTCTACATTTTCTTTT  50

seq1  GCTAACAACCAAAATTCCAAGGAATTTTGCACTAACACTGAATTTATATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAACCAAAATTCCAAGGAATTTTGCACTAACACTGAATTTATATG  100

seq1  GAGCTGGCAGGCCTCTCAGTTTTTTCTCTGGAGAACTCCTGCCTCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGCAGGCCTCTCAGTTTTTTCTCTGGAGAACTCCTGCCTCTTTTG  150

seq1  CAGCTGCTTGCAGACTGCCCTGGCTGACCCTCACTCAGAAGGCAAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTTGCAGACTGCCCTGGCTGACCCTCACTCAGAAGGCAAGGCAT  200

seq1  TCTATTATCCTTTTCTCCATCTCTTACTCTTGGGAGCCTCCGAGATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTATCCTTTTCTCCATCTCTTACTCTTGGGAGCCTCCGAGATTTAC  250

seq1  AGCTCGCCTGCCCTCTTGTTTTTCTCTCCAACATTAATAAAATGATCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGCCTGCCCTCTTGTTTTTCTCTCCAACATTAATAAAATGATCCCC  300

seq1  CAGTGTCCTTTTGAGTATATGTAAAAATGATGTTATCAGTGAGGATAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTTTTGAGTATATGTAAAAATGATGTTATCAGTGAGGATAAGA  350

seq1  ACCCATACCAAGGAATCCTGAACCCCAGCATTATGTGTATCACAATCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATACCAAGGAATCCTGAACCCCAGCATTATGTGTATCACAATCTTT  400

seq1  TTACATATTCACTTACTGGGGAACATTTAGGGTTGTTCCATTTCCTGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATTCACTTACTGGGGAACATTTAGGGTTGTTCCATTTCCTGTCT  450

seq1  CTTGTGAATAGTACTGGAAAAGAAATAATGGTGTGAGTACCTCTGTTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAATAGTACTGGAAAAGAAATAATGGTGTGAGTACCTCTGTTATG  500

seq1  TGACATAGAATCTTTTGGGTATATTGCAGTAGAGTTATGACTGTATAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGAATCTTTTGGGTATATTGCAGTAGAGTTATGACTGTATAATC  550

seq1  TGCCAGATGTATTTTCATAGTTTTGAGAACCCTCCTTTCTAATTTTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGATGTATTTTCATAGTTTTGAGAACCCTCCTTTCTAATTTTCATG  600

seq1  GCAGACTTATAATTCAACTAGGTGAGAATAAGGCTTCTACGTCCCCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACTTATAATTCAACTAGGTGAGAATAAGGCTTCTACGTCCCCAAAT  650

seq1  CTTTACCAGCAA-TTGATTTTGCTTCTTTTTATGATAACTATATGACTAT  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTTACCAGCAATTTGATTTTGCTTCTTTTTATGATAACTATATGACTAT  700

seq1  GGGAAGATGGAATGTTAAGTCATTTTTA-TTTGCATACCCTTAATGGCTA  748
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGGAAGATGGAATGTTAAGTCATTTTTATTTTGCATACCCTTAATGGCTA  750

seq1  AAAACTGTTG-AATACTTTTCCAATTATTTAAGGACCATTTGTGTTTCTC  797
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTTGAAATACTTTTCCAATTATTTAAGGACCATTTGTGTTTCTC  800

seq1  TTTCTTTCTTTTTTTTTCTTT--CTTCTTTCGTTTGT-GAG-TTCA-GGT  842
      |||||||||||||||||||||   ||||||||||||| ||| |||| |||
seq2  TTTCTTTCTTTTTTTTTCTTTTCTTTCTTTCGTTTGTGGAGTTTCAGGGT  850

seq1  TCTTTACTTCTTTATATATTCTATA  867
      |||||||||||||||| | ||||||
seq2  TCTTTACTTCTTTATAAAATCTATA  875

seq1: chr13_3168166_3168205
seq2: B6Ng01-019O02.g_431_470 (reverse)

seq1  CATGTAGAAGAATGCAAATTCATCCATTCTTATCTCCTTG  40
      ||||||||||||| | ||||  ||||||||||||||||||
seq2  CATGTAGAAGAATTCGAATTGCTCCATTCTTATCTCCTTG  40