BAC Information

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BAC

Clone NameB6Ng01-020C10
Chromosome11 (Build37)
Map Location 39,121,619 - 39,174,214
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020C10.bB6Ng01-020C10.g
ACCDH853033DH853034
length983444
definitionDH853033|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C10, 5' end.DH853034|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,121,619 - 39,122,619)(39,173,765 - 39,174,214)
sequence
gaattccaagtattctatatttatattgagaatttcttgaattttacatt
tacaataagctttaagaatgctatttttacaatataaaataaacaccttt
ttattcaacaaagtaatttgatatatattgctcacattgtatcatgtggt
actggtttaaagattctagattgtaaattttattcttccaaatgttttaa
taaataaaatagtgatgaatatatgggaaccaatgcattaccagtaacat
tcatgacaagaaaatcttgataaaatattgataaaactggccacacactg
atataaggacgacatgcttttatatgatctcttataatgtacatttagta
atgtttgaatctaattactaaacatcataatttctaaaactacatcttta
ttggaattatttcttcttataaataaattcaaaaattagcgcaaaaaatt
agaaatgtcttccctaacaattgactgagggttcagggaagtccacattg
agttggtagctttcagtaacatgtggcaatttaattcatgatacaactga
gaaagcagtctagggaaggaaatgaaaatgtagatgctcacagatcagaa
aagcaaaaaacatcaaatcagaaggatatttttataataaagcttgtgta
ccttataattgaattgttacttcaacttgaggtccttactatctaagaga
caattcaaatacagaaagacttgcatagacttttcaagactgtgtaaaat
gaaaggctacacaaaggcaaactgacgaataggaactcacagacattatt
aaaataaattatttcatgaaaggagtgcttgtggagtaatcaacacagga
gcagagagtctcctgatagacaaatagtagaattcaagttatatattcaa
actgctgttatttgcactgtctcatgagaaacatcagtcatatgctcaat
ttgtgttctcatatactctgagcatgcagtatt
ttgagttggttgttcctcagtctctgctccatcttatccctgcatacctt
gtagggaagacaaatttggggttgaaggttttgtgtgtggattaatgtcc
cccgcaggggtattcttttttatataagataatatattggacaaacacat
ttgtaattataaaaattatcctctttccaacttaataatatttttaacat
gtaataatacatatttctgaatttaaatatgacaaattaaagctcatttt
cactcctctttccccttttatccttctccctgtcccttaatagtttaata
gtgaggatattaagttgcataaaaattcacattttcttagctatcctatt
ttcttaatctgcacatcaccattgttctctctctccctctccctctccct
ctccctctccctctccctctccctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_39121619_39122619
seq2: B6Ng01-020C10.b_42_1024

seq1  GAATTCCAAGTATTCTATATTTATATTGAGAATTTCTTGAATTTTACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTATTCTATATTTATATTGAGAATTTCTTGAATTTTACATT  50

seq1  TACAATAAGCTTTAAGAATGCTATTTTTACAATATAAAATAAACACCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATAAGCTTTAAGAATGCTATTTTTACAATATAAAATAAACACCTTT  100

seq1  TTATTCAACAAAGTAATTTGATATATATTGCTCACATTGTATCATGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAACAAAGTAATTTGATATATATTGCTCACATTGTATCATGTGGT  150

seq1  ACTGGTTTAAAGATTCTAGATTGTAAATTTTATTCTTCCAAATGTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTTAAAGATTCTAGATTGTAAATTTTATTCTTCCAAATGTTTTAA  200

seq1  TAAATAAAATAGTGATGAATATATGGGAACCAATGCATTACCAGTAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATAGTGATGAATATATGGGAACCAATGCATTACCAGTAACAT  250

seq1  TCATGACAAGAAAATCTTGATAAAATATTGATAAAACTGGCCACACACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACAAGAAAATCTTGATAAAATATTGATAAAACTGGCCACACACTG  300

seq1  ATATAAGGACGACATGCTTTTATATGATCTCTTATAATGTACATTTAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGACGACATGCTTTTATATGATCTCTTATAATGTACATTTAGTA  350

seq1  ATGTTTGAATCTAATTACTAAACATCATAATTTCTAAAACTACATCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAATCTAATTACTAAACATCATAATTTCTAAAACTACATCTTTA  400

seq1  TTGGAATTATTTCTTCTTATAAATAAATTCAAAAATTAGCGCAAAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTATTTCTTCTTATAAATAAATTCAAAAATTAGCGCAAAAAATT  450

seq1  AGAAATGTCTTCCCTAACAATTGACTGAGGGTTCAGGGAAGTCCACATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTCTTCCCTAACAATTGACTGAGGGTTCAGGGAAGTCCACATTG  500

seq1  AGTTGGTAGCTTTCAGTAACATGTGGCAATTTAATTCATGATACAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTAGCTTTCAGTAACATGTGGCAATTTAATTCATGATACAACTGA  550

seq1  GAAAGCAGTCTAGGGAAGGAAATGAAAATGTAGATGCTCACAGATCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGTCTAGGGAAGGAAATGAAAATGTAGATGCTCACAGATCAGAA  600

seq1  AAGCAAAAAACATCAAATCAGAAGGATATTTTTATAATAAAGCTTGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAACATCAAATCAGAAGGATATTTTTATAATAAAGCTTGTGTA  650

seq1  CCTTATAATTGAATTGTTACTTCAACTTGAGGTCCTTACTATCTAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAATTGAATTGTTACTTCAACTTGAGGTCCTTACTATCTAAGAGA  700

seq1  CAATTCAAATACAGAAAGACTTGCATAGACTTTTCAAGACTGTGTAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAAATACAGAAAGACTTGCATAGACTTTTCAAGACTGTGTAAAAT  750

seq1  GAAAGGCTACACAAAGGCAAACTGACGAATAGGAACTCACAGACAATTAT  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAAGGCTACACAAAGGCAAACTGACGAATAGGAACTCACAGAC-ATTAT  799

seq1  TAAAATAAATTATTTTCATGAAAGGAGTGCTTGTGGAGTTAATCAACACA  850
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TAAAATAAATTA-TTTCATGAAAGGAGTGCTTGTGGAG-TAATCAACACA  847

seq1  GGAGCAGAGAAGTCTCCTTGATAGACAAATAGTAGGAATTCAAGTTATAT  900
      ||||||||| ||||||| |||||||||||||||| |||||||||||||| 
seq2  GGAGCAGAG-AGTCTCC-TGATAGACAAATAGTA-GAATTCAAGTTATA-  893

seq1  TATTTCAAAACTGCTGTTATTTTGCACTGTTCTCATGAGAAACATTCAGT  950
      ||||   |||||||||||| ||||||||| |||||||||||||| |||||
seq2  TATT--CAAACTGCTGTTA-TTTGCACTG-TCTCATGAGAAACA-TCAGT  938

seq1  CAATATGCTCAATATGTGTTCTCATATTACTCTTGAGCATGGCCAAGTAT  1000
      | ||||||||||| |||||||||||| ||||| ||||||||    |||||
seq2  C-ATATGCTCAATTTGTGTTCTCATA-TACTC-TGAGCATG---CAGTAT  982

seq1  T  1001
      |
seq2  T  983

seq1: chr11_39173765_39174214
seq2: B6Ng01-020C10.g_66_515 (reverse)

seq1  AGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAG  50
      |||| ||||| ||||| |||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGGGAGAGGGAGAGGGAGAGGGAGAGGGAG  50

seq1  AGGGAGAGGGAGAGAGAGAACAATGGTGATGTGCAGATTAAGAAAATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGGGAGAGAGAGAACAATGGTGATGTGCAGATTAAGAAAATAGG  100

seq1  ATAGCTAAGAAAATGTGAATTTTTATGCAACTTAATATCCTCACTATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTAAGAAAATGTGAATTTTTATGCAACTTAATATCCTCACTATTAA  150

seq1  ACTATTAAGGGACAGGGAGAAGGATAAAAGGGGAAAGAGGAGTGAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTAAGGGACAGGGAGAAGGATAAAAGGGGAAAGAGGAGTGAAAATG  200

seq1  AGCTTTAATTTGTCATATTTAAATTCAGAAATATGTATTATTACATGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAATTTGTCATATTTAAATTCAGAAATATGTATTATTACATGTTA  250

seq1  AAAATATTATTAAGTTGGAAAGAGGATAATTTTTATAATTACAAATGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTATTAAGTTGGAAAGAGGATAATTTTTATAATTACAAATGTGT  300

seq1  TTGTCCAATATATTATCTTATATAAAAAAGAATACCCCTGCGGGGGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAATATATTATCTTATATAAAAAAGAATACCCCTGCGGGGGACAT  350

seq1  TAATCCACACACAAAACCTTCAACCCCAAATTTGTCTTCCCTACAAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCACACACAAAACCTTCAACCCCAAATTTGTCTTCCCTACAAGGTA  400

seq1  TGCAGGGATAAGATGGAGCAGAGACTGAGGAACAACCAACTCAAGAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGATAAGATGGAGCAGAGACTGAGGAACAACCAACTCAAGAATTC  450