BAC Information

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BAC

Clone NameB6Ng01-020D09
Chromosome11 (Build37)
Map Location 75,060,348 - 75,168,416
singlet/doubletdoublet
Overlap geneRtn4rl1, Rpa1, Smyd4
Upstream geneOlfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1
Downstream geneSerpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c, Crk, Ywhae, Doc2b, Rph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020D09.bB6Ng01-020D09.g
ACCDH853073DH853074
length1,0561,062
definitionDH853073|Mus musculus domesticus DNA, BAC clone: B6Ng01-020D09, 5' end.DH853074|Mus musculus domesticus DNA, BAC clone: B6Ng01-020D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,060,348 - 75,061,425)(75,167,337 - 75,168,416)
sequence
gaattccacttgctctccaatcaagagttgcatcctggtttggcttggtt
tttttttttcaagatagagtttctctctgtacccctggctttcctggaac
tcactctgtagactaggctaacctcagactcacagagatccacctgcctc
tgcctctgagtgctgggattcaaagtatgagccacctgagccaccgccgc
tccgcttgcatcctggattcctttttttttccaagacagggtttctctgt
atagctctggctgtcctgggaactcacgttgtagactaggctggccacga
actcagaaatccgcctggccctgcctcctgagtgctgggattaaaggcgt
gcgccaccacgcccagcttcgcaggctcgcatcctggattcttaaacatt
tgaacaggatcttttcttgctgctttccacaacagtgtaagccactgaag
tagtcagagggactccacaatggccaggggtcaaggtctacgctagagga
aggagggagggactacaaggcccttcctctacaagccacgcccctttctt
tctctggaaccttctggacagttcctccactggggagctactggctttct
agtgtgtatatggggatttttgagggggcctcaggactggcttcctccaa
gtagcacccctcagagttctccctgccagacattttattactctttatca
gacaccagactctggcctctatgcacagacacacatgtcccctcccccaa
tgcacacatataacacacacactcacacaaaacaaaaggtaataggagat
agtttcatacaggtataaaacataagaaaaataaggcaataagcctcaag
ccaagccagtggcttcgctttacaccaattctgtccaaaaaaggcagctg
atggacttgaagctttctagtagcaaaggctaagacagagctgagatatg
gctccgtgttaagagcaccgactactctcagaggttgagttcaaatccca
gcaccacatgttgacacacatctgaatggaccgatgcctcttcgtgtgtc
taaaga
gaattctaatacatgtgggtaccaggggttgaactcaaagtcttcatgtt
tacgtagcaagtttccttctgctagcctagtgaagctgaggcaggtacag
ccggttctttactgctccttgcaaatggtcctcctgagctttcctttgag
agcctacaaagaactctttttttctttaggtctccaggttttggtcttaa
gaggttctggacttggatctgtagctgtcatatcacagacattcaacatc
tggcaaatgtcttgacaaaggagatcacttgtgtttgctgcagtgtccct
tctggctgtgagattttgctcctcaccactgcaggactgcagatctattc
tgcctttttagttgacttttcattcctgagaactggggaaaactgacttt
gtatttgggctttgaatttgtccatttgtcaatccatcacaccagaccta
accaactgccaagagttctgctgacttttgttttctctagggtggtcact
ttgctgggctcatcctcatccttggcctgcagtttatccccaggaaagaa
aatggctaacgactgctaagaagcagtctttccttccagaaattttagtc
tatctagaccttgctgcagtctgaagtctttaaaatgtgtttgttatggt
agaatattttgagttgccttaggagtattgcttgctgtcacctatcatat
tctatcaggaagcagacgtcccatttaccaaatgtgaagaaatatggcat
caatacccactgcaaaaagtgtaaataaataataaaaaaatagatttatt
acagagtgcaaggaaaagaaaaaatcagccagtttcagaattgtaactgg
acaatgttggtacagttcatgaagaggttctacaaaatggctgggggtgg
gaacataatgagttagtttgctttttttttctcttccttccctttccttt
cctacagtctcatgtagtctatggtttcaactcaccactgtaaatcacct
gactctgatcttctgcacctgcaatgtaagcatgtgccaccaggctgctc
accatttggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_75060348_75061425
seq2: B6Ng01-020D09.b_43_1098

seq1  GAATTCCACTTGCTCTCCAATCAAGAGTTGCATCCTGGTTTGGCTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTGCTCTCCAATCAAGAGTTGCATCCTGGTTTGGCTTGGTT  50

seq1  TTTTTTTTTCAAGATAGAGTTTCTCTCTGTACCCCTGGCTTTCCTGGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCAAGATAGAGTTTCTCTCTGTACCCCTGGCTTTCCTGGAAC  100

seq1  TCACTCTGTAGACTAGGCTAACCTCAGACTCACAGAGATCCACCTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGTAGACTAGGCTAACCTCAGACTCACAGAGATCCACCTGCCTC  150

seq1  TGCCTCTGAGTGCTGGGATTCAAAGTATGAGCCACCTGAGCCACCGCCGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGAGTGCTGGGATTCAAAGTATGAGCCACCTGAGCCACCGCCGC  200

seq1  TCCGCTTGCATCCTGGATTCCTTTTTTTTTCCAAGACAGGGTTTCTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTTGCATCCTGGATTCCTTTTTTTTTCCAAGACAGGGTTTCTCTGT  250

seq1  ATAGCTCTGGCTGTCCTGGGAACTCACGTTGTAGACTAGGCTGGCCACGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTGGCTGTCCTGGGAACTCACGTTGTAGACTAGGCTGGCCACGA  300

seq1  ACTCAGAAATCCGCCTGGCCCTGCCTCCTGAGTGCTGGGATTAAAGGCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAATCCGCCTGGCCCTGCCTCCTGAGTGCTGGGATTAAAGGCGT  350

seq1  GCGCCACCACGCCCAGCTTCGCAGGCTCGCATCCTGGATTCTTAAACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCACCACGCCCAGCTTCGCAGGCTCGCATCCTGGATTCTTAAACATT  400

seq1  TGAACAGGATCTTTTCTTGCTGCTTTCCACAACAGTGTAAGCCACTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGATCTTTTCTTGCTGCTTTCCACAACAGTGTAAGCCACTGAAG  450

seq1  TAGTCAGAGGGACTCCACAATGGCCAGGGGTCAAGGTCTACGCTAGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAGGGACTCCACAATGGCCAGGGGTCAAGGTCTACGCTAGAGGA  500

seq1  AGGAGGGAGGGACTACAAGGCCCTTCCTCTACAAGCCACGCCCCTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGGGACTACAAGGCCCTTCCTCTACAAGCCACGCCCCTTTCTT  550

seq1  TCTCTGGAACCTTCTGGACAGTTCCTCCACTGGGGAGCTACTGGCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAACCTTCTGGACAGTTCCTCCACTGGGGAGCTACTGGCTTTCT  600

seq1  AGTGTGTATATGGGGATTTTTGAGGGGGCCTCAGGACTGGCTTCCTCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTATATGGGGATTTTTGAGGGGGCCTCAGGACTGGCTTCCTCCAA  650

seq1  GTAGCACCCCTCAGAGTTCTCCCTGCCAGACATTTTATTACTCTTTATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACCCCTCAGAGTTCTCCCTGCCAGACATTTTATTACTCTTTATCA  700

seq1  GACACCAGACTCTGGCCTCTATGCACAGACACACATGTCCCCTCCCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAGACTCTGGCCTCTATGCACAGACACACATGTCCCCTCCCCCAA  750

seq1  TGCACACATATAACACACACACTCACACAAAACAAAAGGTAATAGGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACATATAACACACACACTCACACAAAACAAAAGGTAATAGGAGAT  800

seq1  AGTTTCATACAGGTATAAAACATAAGAAAAATAAGGCAATAAGCCTCAGG  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTTTCATACAGGTATAAAACATAAGAAAAATAAGGCAATAAGCCTCAAG  850

seq1  CCAAGCCAGTGGCTTCGCTTTACACCAATTCTGTCCAATAGAAGGCAGGC  900
      |||||||||||||||||||||||||||||||||||||| | |||||| ||
seq2  CCAAGCCAGTGGCTTCGCTTTACACCAATTCTGTCCAA-AAAAGGCA-GC  898

seq1  TGATGGACTTGAAGCTTTCTAGTAGGCAAAGGCTAAGAACAGAGCTGGAG  950
      |||||||||||||||||||||||| |||||||||||| |||||||| |||
seq2  TGATGGACTTGAAGCTTTCTAGTA-GCAAAGGCTAAG-ACAGAGCT-GAG  945

seq1  ATATGGCTCCGTGGTTAAGAGCACCGACTACTCTTCCAGAGGTCTTGAGT  1000
      |||||||||||| |||||||||||||||||||||  ||||||  ||||||
seq2  ATATGGCTCCGT-GTTAAGAGCACCGACTACTCT--CAGAGG--TTGAGT  990

seq1  TCAAATCCCAGCAACCACATGGTTGGCACACAACCATCTGTAATGGGAGC  1050
      |||||||||||| ||||||| |||| ||||    |||||| |||||   |
seq2  TCAAATCCCAGC-ACCACAT-GTTGACACA----CATCTG-AATGG--AC  1031

seq1  CGATGCCCTCTTCTGGTGTGTCTAAAGA  1078
      ||||| |||||||  |||||||||||||
seq2  CGATG-CCTCTTC--GTGTGTCTAAAGA  1056

seq1: chr11_75167337_75168416
seq2: B6Ng01-020D09.g_67_1128 (reverse)

seq1  AAACCAAATGTGTGAGCCAGGCCTGGTGGCACATGCTTACATTGCCAGCG  50
      |||||||||| ||||||   |||||||||||||||||||||||| ||| |
seq2  AAACCAAATG-GTGAGC--AGCCTGGTGGCACATGCTTACATTG-CAG-G  45

seq1  TGCAGAAGGATCAGAAGTTCAAGGTGATTTACAGTGGTGAGTTTGAGACC  100
      ||||||| |||||| |||   |||||||||||||||||||| |||| |||
seq2  TGCAGAA-GATCAG-AGT--CAGGTGATTTACAGTGGTGAG-TTGAAACC  90

seq1  ATAGACTACATGAGACCTTGTAAGGAAAGGAAAGGGAAGGAAAGAGAAAA  150
      ||||||||||||||||  ||| |||||||||||||||||| ||||| |||
seq2  ATAGACTACATGAGAC--TGT-AGGAAAGGAAAGGGAAGG-AAGAG-AAA  135

seq1  AAAAAAGCAAACTAACTCATTATGTTCCCACCCCCAGCCATTTTGTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGCAAACTAACTCATTATGTTCCCACCCCCAGCCATTTTGTAGAA  185

seq1  CCTCTTCATGAACTGTACCAACATTTGTCCAGTTACAATTCTGAAACTGG  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCTCTTCATGAACTGTACCAACA-TTGTCCAGTTACAATTCTGAAACTGG  234

seq1  CTGATTTTTTTCTTTTCCCTTGCACTCTGTAATAAATCTATTTTTTTATT  300
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTGA-TTTTTTCTTTT-CCTTGCACTCTGTAATAAATCTATTTTTTTATT  282

seq1  ATTTATTTACACTTTTTGCAGTGGGTATTGATGCCATATTTCTTCACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTACACTTTTTGCAGTGGGTATTGATGCCATATTTCTTCACATT  332

seq1  TGGTAAATGGGACGTCTGCTTCCTGATAGAATATGATAGGTGACAGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAATGGGACGTCTGCTTCCTGATAGAATATGATAGGTGACAGCAAG  382

seq1  CAATACTCCTAAGGCAACTCAAAATATTCTACCATAACAAACACATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTCCTAAGGCAACTCAAAATATTCTACCATAACAAACACATTTTA  432

seq1  AAGACTTCAGACTGCAGCAAGGTCTAGATAGACTAAAATTTCTGGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCAGACTGCAGCAAGGTCTAGATAGACTAAAATTTCTGGAAGGA  482

seq1  AAGACTGCTTCTTAGCAGTCGTTAGCCATTTTCTTTCCTGGGGATAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCTTCTTAGCAGTCGTTAGCCATTTTCTTTCCTGGGGATAAACT  532

seq1  GCAGGCCAAGGATGAGGATGAGCCCAGCAAAGTGACCACCCTAGAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCAAGGATGAGGATGAGCCCAGCAAAGTGACCACCCTAGAGAAAA  582

seq1  CAAAAGTCAGCAGAACTCTTGGCAGTTGGTTAGGTCTGGTGTGATGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCAGCAGAACTCTTGGCAGTTGGTTAGGTCTGGTGTGATGGATT  632

seq1  GACAAATGGACAAATTCAAAGCCCAAATACAAAGTCAGTTTTCCCCAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGGACAAATTCAAAGCCCAAATACAAAGTCAGTTTTCCCCAGTT  682

seq1  CTCAGGAATGAAAAGTCAACTAAAAAGGCAGAATAGATCTGCAGTCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAATGAAAAGTCAACTAAAAAGGCAGAATAGATCTGCAGTCCTGC  732

seq1  AGTGGTGAGGAGCAAAATCTCACAGCCAGAAGGGACACTGCAGCAAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGAGGAGCAAAATCTCACAGCCAGAAGGGACACTGCAGCAAACAC  782

seq1  AAGTGATCTCCTTTGTCAAGACATTTGCCAGATGTTGAATGTCTGTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCTCCTTTGTCAAGACATTTGCCAGATGTTGAATGTCTGTGATA  832

seq1  TGACAGCTACAGATCCAAGTCCAGAACCTCTTAAGACCAAAACCTGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTACAGATCCAAGTCCAGAACCTCTTAAGACCAAAACCTGGAGA  882

seq1  CCTAAAGAAAAAAAGAGTTCTTTGTAGGCTCTCAAAGGAAAGCTCAGGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAAAAAAAGAGTTCTTTGTAGGCTCTCAAAGGAAAGCTCAGGAG  932

seq1  GACCATTTGCAAGGAGCAGTAAAGAACCGGCTGTACCTGCCTCAGCTTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTGCAAGGAGCAGTAAAGAACCGGCTGTACCTGCCTCAGCTTCA  982

seq1  CTAGGCTAGCAGAAGGAAACTTGCTACGTAAACATGAAGACTTTGAGTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTAGCAGAAGGAAACTTGCTACGTAAACATGAAGACTTTGAGTTC  1032

seq1  AACCCCTGGTACCCACATGTATTAGAATTC  1080
      ||||||||||||||||||||||||||||||
seq2  AACCCCTGGTACCCACATGTATTAGAATTC  1062