BAC Information

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BAC

Clone NameB6Ng01-020H02
Chromosome11 (Build37)5 (Build37)
Map Location 11,430,003 - 11,431,100115,831,420 - 115,831,723
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik
Downstream geneIkzf1, Fignl1, Ddc, Grb10, Cobl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020H02.bB6Ng01-020H02.g
ACCDH853240DH853241
length1,086970
definitionDH853240|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H02, 5' end.DH853241|Mus musculus domesticus DNA, BAC clone: B6Ng01-020H02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,430,003 - 11,431,100)(115,831,420 - 115,831,723)
sequence
gaattcctcttgagctgctgcttcatttagttacaatcaagatctatcat
ctattcaatcatttcaaattagtcagtcacttattcacaaacatttgcca
ataaccaccccatgcaactgtgcactgaagatgctagaggcattagggat
gccagataaaaattagtgcctgtcgtagctgctcactgctccctatgtag
agacacatctctagggacccaggaacacaaccatcttccagtctgaattg
caaacacaataggaaagggcccctcataccctggttattcttttcccagt
tcaccacactgactgcatcccccaaccctgaccacaaaagcacaagccag
agcttcctctttcccataggcaaactcttgccagtgtggggtcttcacat
ctgctcccaaagaaagatatatctttcaaacacttcaagttaaccattcc
actgacgcattagtcctgcactgaatcttctctcatctggttccctaaca
agaaaaggaaagttgtttatgctaaatagacccagccttcagagtcagag
tcagcctgtgaattctgacctgcatccacagctagttctccttcctaggg
tttagggaggaacatagcaactcagacacaattccaacctggttgagatc
tacttagatgacacagattagacatctcacatggcagccattcgacacca
aagaatcacatttgtcctcagaaaaaataacacaaaatagtgtatacatt
atccctgagacttaccagggagagtggagaaaacagtacgcaagaagagc
atctatctattaatgcctcgctttcctcctcccctccctacacagatcct
cctgaagcctaatatagcctgtttgaatatttatttgcaatccatgtgtt
ctgagatttagtgaatggaaattccttcagtttacattgctaataaatgt
tttaggactttagtacataagagattgattaccagggccattcctacacc
ttataggacacttctttgattaggtaattataatactactcccagagtct
agtcctgatgtagcccttcccatctgtctgtctgtc
gaattccatggatcttcctgcccctagctccctagtgttgagatgtgcat
gtcactgcacccagccttctgtgggagagtatccaaattcaggtttttat
gcctgtacttcatttaaagggttttttttcttttgatagagatatcaaac
tgagaatagtgtgtttgtatcttattacaaacattacaaagcattgccaa
aaatgtttagttaaagtttgcaaaatcatcctaaattattctttaaaaga
atagctatttgaaagtgtgtctcaaacatagtctataaatgtcatattaa
tttttattaaaaattgctcttatgccagaatttattaaaattttttatgt
ctatagtatttttgtgcccacagacttatttttttttattattagttttt
ttttgtttttttttttttggctttttgagacagggtttctctgtatagcc
ctggctgtcctggaactcactttgtagaccaggctggcctcgaactcaga
aatctgcctgcctctgcctcccgagtgctggaattaaagatgtgtgccac
cacgcctggctccacagacttattttaataattatatactttaaatataa
tatttattctttgagagtttcagagacatatacaatgtattttaatctta
tctacctatgtccttctaactcttgccagaattcaccaacccatttctgt
cttgacttcattccctttgtgattattacactttctaatagcccactgtg
tctaaccagcactgactgtatatggagggctatgagatcatccactgttg
cacaggtaacctttcgagcagccatatccctccctcagcagccaccaact
gtcaatagcttttcaacttggactggggtttcagcagcttctctgctctc
catccatgcttgagccttttctggctgatctgtgcagtgacagagctgct
gtgggctgatttgtcatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_11430003_11431100
seq2: B6Ng01-020H02.b_44_1129

seq1  GAATTCCTCTTGAGCTGCTGCTTCATTTAGTTACAATCAAGATCTATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGAGCTGCTGCTTCATTTAGTTACAATCAAGATCTATCAT  50

seq1  CTATTCAATCATTTCAAATTAGTCAGTCACTTATTCACAAACATTTGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCAATCATTTCAAATTAGTCAGTCACTTATTCACAAACATTTGCCA  100

seq1  ATAACCACCCCATGCAACTGTGCACTGAAGATGCTAGAGGCATTAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCACCCCATGCAACTGTGCACTGAAGATGCTAGAGGCATTAGGGAT  150

seq1  GCCAGATAAAAATTAGTGCCTGTCGTAGCTGCTCACTGCTCCCTATGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATAAAAATTAGTGCCTGTCGTAGCTGCTCACTGCTCCCTATGTAG  200

seq1  AGACACATCTCTAGGGACCCAGGAACACAACCATCTTCCAGTCTGAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATCTCTAGGGACCCAGGAACACAACCATCTTCCAGTCTGAATTG  250

seq1  CAAACACAATAGGAAAGGGCCCCTCATACCCTGGTTATTCTTTTCCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAATAGGAAAGGGCCCCTCATACCCTGGTTATTCTTTTCCCAGT  300

seq1  TCACCACACTGACTGCATCCCCCAACCCTGACCACAAAAGCACAAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACACTGACTGCATCCCCCAACCCTGACCACAAAAGCACAAGCCAG  350

seq1  AGCTTCCTCTTTCCCATAGGCAAACTCTTGCCAGTGTGGGGTCTTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCTCTTTCCCATAGGCAAACTCTTGCCAGTGTGGGGTCTTCACAT  400

seq1  CTGCTCCCAAAGAAAGATATATCTTTCAAACACTTCAAGTTAACCATTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCAAAGAAAGATATATCTTTCAAACACTTCAAGTTAACCATTCC  450

seq1  ACTGACGCATTAGTCCTGCACTGAATCTTCTCTCATCTGGTTCCCTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACGCATTAGTCCTGCACTGAATCTTCTCTCATCTGGTTCCCTAACA  500

seq1  AGAAAAGGAAAGTTGTTTATGCTAAATAGACCCAGCCTTCAGAGTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGGAAAGTTGTTTATGCTAAATAGACCCAGCCTTCAGAGTCAGAG  550

seq1  TCAGCCTGTGAATTCTGACCTGCATCCACAGCTAGTTCTCCTTCCTAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGTGAATTCTGACCTGCATCCACAGCTAGTTCTCCTTCCTAGGG  600

seq1  TTTAGGGAGGAACATAGCAACTCAGACACAATTCCAACCTGGTTGAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAGGAACATAGCAACTCAGACACAATTCCAACCTGGTTGAGATC  650

seq1  TACTTAGATGACACAGATTAGACATCTCACATGGCAGCCATTCGACACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGATGACACAGATTAGACATCTCACATGGCAGCCATTCGACACCA  700

seq1  AAGAATCACATTTGTCCTCAGAAAAAATAACACAAAATAGTGTATACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCACATTTGTCCTCAGAAAAAATAACACAAAATAGTGTATACATT  750

seq1  ATCCCTGAGACTTACCAGGGAGAGTGGAGAAAACAGTAGGCAAGAAGAGC  800
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCCCTGAGACTTACCAGGGAGAGTGGAGAAAACAGTACGCAAGAAGAGC  800

seq1  ATCTATCTATTAATGCCTCGCTTTCCTCCTCCCCTCCCTACACAGATCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATTAATGCCTCGCTTTCCTCCTCCCCTCCCTACACAGATCCT  850

seq1  CCTGAAGCCTAATATAGCCTGTTTGAATATTTATTTGCAATCCATGTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGCCTAATATAGCCTGTTTGAATATTTATTTGCAATCCATGTGTT  900

seq1  CTGAGATTTAGTGAATGGAAAATTCCTTCAGTTTACAATTGCTAATAAAA  950
      |||||||||||||||||| ||||||||||||||||| ||||||||| |||
seq2  CTGAGATTTAGTGAATGG-AAATTCCTTCAGTTTAC-ATTGCTAAT-AAA  947

seq1  TGTTTTTAGGACTTTAGTACATAAGAGATTGATTACCAGGGCCATTCCTA  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTTAGGACTTTAGTACATAAGAGATTGATTACCAGGGCCATTCCTA  996

seq1  CACCTTATAGGACACTTCTTTGATTAGGTTAATTTATAAATAACTACTCC  1050
      |||||||||||||||||||||||||||||  | ||||||   |||||| |
seq2  CACCTTATAGGACACTTCTTTGATTAGGT--AATTATAA--TACTACT-C  1041

seq1  CCAGAGTCTAGGTCCTTGATGTAGCCCTTCCCATCTGTCCTGTCTGTC  1098
      |||||||||| |||| |||||||||||||||||||||| |||||||||
seq2  CCAGAGTCTA-GTCC-TGATGTAGCCCTTCCCATCTGT-CTGTCTGTC  1086

seq1: chr5_115831420_115831723
seq2: B6Ng01-020H02.g_336_626

seq1  TCTCAAACATAGTCTATTCATTAAATG-AACACGAA-ATTTATTAAATAG  48
      ||||||||||||||||     ||||||  | |  ||  ||||||||| | 
seq2  TCTCAAACATAGTCTA-----TAAATGTCATATTAATTTTTATTAAAAAT  45

seq1  TGTTGAT-TAAAAGAA---AAAAAAA-----AGTCCCTCTACCAT-----  84
      || |  | |   ||||   |  ||||       |  || ||  ||     
seq2  TGCTCTTATGCCAGAATTTATTAAAATTTTTTATGTCTATAGTATTTTTG  95

seq1  ----CAAAGACAACCACTGTTTTTTAAT-TTATTCCCTTCTAGGTTTATA  129
          || ||||    | | ||||||| | ||| |   || | | ||| | 
seq2  TGCCCACAGAC--TTATTTTTTTTTATTATTAGTTTTTTTTTGTTTTTTT  143

seq1  TTGAAAATGAAACCCAGAGCTCTCAACTCCCCCCCCCCCCCCGACAGGGT  179
      ||     ||         ||| |                   ||||||||
seq2  TT--TTTTG---------GCTTT---------------TTGAGACAGGGT  167

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGCTG  229
      |||||||| |||||||||||||||||||||||||| |||||| |||||||
seq2  TTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTG  217

seq1  GCCTCGAACTTAGAAATCCGTCTGCCTCTGCCTCCCAAGTGCTGGGATTA  279
      |||||||||| ||||||| | ||||||||||||||| |||||||| ||||
seq2  GCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGAATTA  267

seq1  AAGTTGTGTGCCACCATTGCCTGGC  304
      ||| ||||||||||||  |||||||
seq2  AAGATGTGTGCCACCA-CGCCTGGC  291