BAC Information

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BAC

Clone NameB6Ng01-020I08
Chromosome11 (Build37)
Map Location 44,096,054 - 44,246,117
singlet/doubletdoublet
Overlap geneIl12b
Upstream geneEG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
Downstream geneUblcp1, 3732413I11Rik, Ebf1, LOC382510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020I08.bB6Ng01-020I08.g
ACCDH853295DH853296
length1,092995
definitionDH853295|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I08, 5' end.DH853296|Mus musculus domesticus DNA, BAC clone: B6Ng01-020I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,096,054 - 44,097,162)(44,245,106 - 44,246,117)
sequence
gaattcaactgaagtaggtaattatcaaagtgcttcagattttagcagga
gtgtgttcagtagtattatgatacaatggaaagcaggagtcaggtaatat
aatagcattcagtaccgaggagataaaggatgctcgtgggtcttcctgat
gacttaatcctcattccttgcctgggtggggaatgctctctgttgggcta
cattcataaggaagggccccgtttcttactttgaaatcaaatgaagcatt
tcttcccctttctctcatcttacagatcacatggtgcatattagctcagc
ttgctgagccaggtgctcttcgcagagcctcgaaagctgagcgaatattg
caaatcccccaggggtaggccaattccatttgctgtgactgaaggtcctg
ttgctaactgttgctttctgcccttgttttctttgtcttttttccccata
gccctctacagatcctttgtctaacttataggagccttgaaaattcctct
ttacttaatttcaccaggcttgttttctgtgacttgcaaacaaaaattgg
aaaaaacacaaagtatcctcacctgccttatgaaacttctggtacagaca
taactaatcgattcagtcttgtttccaacacatatttaagagtatgagaa
ttaacactgagacctatgtagaccacagctctttaaatccattcacatca
ttttcatttctgtatctatagatacaatccacctatgtgtgtttgtatgt
gtgtatgacaataatatatacaacatcatatataacattatatataatgt
catctcctccagaaagccttgccaggcctagggcagcccatcctttgtgt
ttgggagcacagaccataatggtggctggtaacagcctgtggaatcgctc
cttctcctgaccattccttacagctcactctccttgtgtctcgtgcagca
gcgcatgctctgggagaactcaacataaatgaatagaccaaattgggaat
tttacaaaagcaagaagtgtatgtcattccaagaataacaggaaagaagc
tctgtgggtgagaaataagaagctagaaacaagtgcttacct
gaattcaaagcgactgacataacactattagtactttggcataggtgaat
gtcatctaaaagaagtaaagagagaacagcaactatgaatcatacctata
acttaaaattttcttgtacttacatttaacagagaggtgacataaaatta
atataaaaaagatatgactataataggcagccaactcagatggtattagt
gagtcattttacatacgcttacactaaccctgagtgtcctttactggtac
agcttgtcttaccttagtccaagtgctagtgcctgtctgcacggggtggt
ataggtggctgtggttttcttccctaggattgggatatttagagaagcat
tcctggttttcttagcagctcacccaggtctgaatctagaagcagaagct
aagagggtggtgggacctgacatcaaacacagtaactatgacagaaagag
atgagatggctcagcagataaaggaacttattcctaaacctaatgacctg
tgcttgatccctgcactccacctggtgagtgactgactcctgaaagttgc
ccctaatctctgctcatgcacaaatacacacataatataactatttaaac
aacaatatgaaagaaatatagagaaagcagtattatattaatctctctcc
acttctctccagctatataatatatatacttactgactttctagaaaagg
aaatatattcaagactattcagaaatatcaagtggaggaagaaagcttaa
aacctaaccagaagaaggtaggtggggcggttggaggacaatccaacctc
caccttgcccgttatcagtgcagccattactgctctgccctgtacccgag
cttttgtcccgccagcaagacacactcaggacaccggaatcttctgtggc
aaagcttttatcagatggaagaccctgaccggaaatggcctgcttatttg
ccgcacgtgacgtttcagcacgtcatgtggctgacactctgattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_44096054_44097162
seq2: B6Ng01-020I08.b_48_1139

seq1  GAATTCAACTGAAGTAGGTAATTATCAAAGTGCTTCAGATTTTAGCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTGAAGTAGGTAATTATCAAAGTGCTTCAGATTTTAGCAGGA  50

seq1  GTGTGTTCAGTAGTATTATGATACAATGGAAAGCAGGAGTCAGGTAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTCAGTAGTATTATGATACAATGGAAAGCAGGAGTCAGGTAATAT  100

seq1  AATAGCATTCAGTACCGAGGAGATAAAGGATGCTCGTGGGTCTTCCTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCATTCAGTACCGAGGAGATAAAGGATGCTCGTGGGTCTTCCTGAT  150

seq1  GACTTAATCCTCATTCCTTGCCTGGGTGGGGAATGCTCTCTGTTGGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATCCTCATTCCTTGCCTGGGTGGGGAATGCTCTCTGTTGGGCTA  200

seq1  CATTCATAAGGAAGGGCCCCGTTTCTTACTTTGAAATCAAATGAAGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATAAGGAAGGGCCCCGTTTCTTACTTTGAAATCAAATGAAGCATT  250

seq1  TCTTCCCCTTTCTCTCATCTTACAGATCACATGGTGCATATTAGCTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTTTCTCTCATCTTACAGATCACATGGTGCATATTAGCTCAGC  300

seq1  TTGCTGAGCCAGGTGCTCTTCGCAGAGCCTCGAAAGCTGAGCGAATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGAGCCAGGTGCTCTTCGCAGAGCCTCGAAAGCTGAGCGAATATTG  350

seq1  CAAATCCCCCAGGGGTAGGCCAATTCCATTTGCTGTGACTGAAGGTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCCCAGGGGTAGGCCAATTCCATTTGCTGTGACTGAAGGTCCTG  400

seq1  TTGCTAACTGTTGCTTTCTGCCCTTGTTTTCTTTGTCTTTTTTCCCCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAACTGTTGCTTTCTGCCCTTGTTTTCTTTGTCTTTTTTCCCCATA  450

seq1  GCCCTCTACAGATCCTTTGTCTAACTTATAGGAGCCTTGAAAATTCCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTACAGATCCTTTGTCTAACTTATAGGAGCCTTGAAAATTCCTCT  500

seq1  TTACTTAATTTCACCAGGCTTGTTTTCTGTGACTTGCAAACAAAAATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAATTTCACCAGGCTTGTTTTCTGTGACTTGCAAACAAAAATTGG  550

seq1  AAAAAACACAAAGTATCCTCACCTGCCTTATGAAACTTCTGGTACAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACAAAGTATCCTCACCTGCCTTATGAAACTTCTGGTACAGACA  600

seq1  TAACTAATCGATTCAGTCTTGTTTCCAACACATATTTAAGAGTATGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAATCGATTCAGTCTTGTTTCCAACACATATTTAAGAGTATGAGAA  650

seq1  TTAACACTGAGACCTATGTAGACCACAGCTCTTTAAATCCATTCACATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTGAGACCTATGTAGACCACAGCTCTTTAAATCCATTCACATCA  700

seq1  TTTTCATTTCTGTATCTATAGATACAATCCACCTATGTGTGTTTGTATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTCTGTATCTATAGATACAATCCACCTATGTGTGTTTGTATGT  750

seq1  GTGTATGACAATAATATATACAACATCATATATAACATTATATATAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGACAATAATATATACAACATCATATATAACATTATATATAATGT  800

seq1  CATCTCCTCCAGAAAGCCTTGCCAGGCCTAGGGCAGGCCCATCCTTTGTG  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATCTCCTCCAGAAAGCCTTGCCAGGCCTAGGGCA-GCCCATCCTTTGTG  849

seq1  TTTTGGGAGCACAGACCATAATGGTGGCTGGTAACAGCCTGTGGAATCGC  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTGGGAGCACAGACCATAATGGTGGCTGGTAACAGCCTGTGGAATCGC  898

seq1  TCCTTCTCCCTGACCATTCCTTACAGCTCACTCTCCTTGTGTCTCGTGCA  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCT-CCTGACCATTCCTTACAGCTCACTCTCCTTGTGTCTCGTGCA  947

seq1  GCAGCGCATGCTCCTGGGAGAAACTCAACATAAATGAATAGACCAAATTG  1000
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  GCAGCGCATGCT-CTGGGAG-AACTCAACATAAATGAATAGACCAAATTG  995

seq1  GGAATTTTTACAAAAAGCAAGAAGTGTAATGTCATTCCAAAGAAATAACA  1050
      |||| |||||| ||||||||||||||| ||||||||||||   |||||| 
seq2  GGAA-TTTTAC-AAAAGCAAGAAGTGT-ATGTCATTCCAA--GAATAAC-  1039

seq1  AGGAACAGAAGCTCTGTGGGTGAGAAATAAAGAAAGCATAGAAAACAAGT  1100
      ||||| ||||||||||||||||||||||||   |||| ||| ||||||||
seq2  AGGAA-AGAAGCTCTGTGGGTGAGAAATAA--GAAGC-TAG-AAACAAGT  1084

seq1  GCTTTACCT  1109
      || ||||||
seq2  GC-TTACCT  1092

seq1: chr11_44245106_44246117
seq2: B6Ng01-020I08.g_65_1059 (reverse)

seq1  GAATCAGGAGCTGTCACGCCACATGACGTGCTGAAACGTCACGCTGCGGG  50
      |||||| ||| ||||| |||||||||||||||||||||||||| ||||| 
seq2  GAATCA-GAG-TGTCA-GCCACATGACGTGCTGAAACGTCACG-TGCGG-  45

seq1  CTATATAAGCAGCGCCATTTTCCCGGTTCAGGGTCTTCCCTTCTGATAAA  100
        | |||||||| |||||||  |||| |||||||||| || |||||||||
seq2  -CAAATAAGCAG-GCCATTT--CCGG-TCAGGGTCTT-CCATCTGATAAA  89

seq1  AGCTTTGCCACAGAAGATTCCGGTTGTCCTGAGTGTGTTCTTGCTGGCGG  150
      ||||||||||||||||||||||| ||||||||||||| |||||||||| |
seq2  AGCTTTGCCACAGAAGATTCCGG-TGTCCTGAGTGTG-TCTTGCTGGC-G  136

seq1  GGACAAAAGCTCGGGATACAGGGCAGAGCAGTAATGGGCTGCACTGGATA  200
      ||||||||||||||| ||||||||||||||||||| ||||||||| ||||
seq2  GGACAAAAGCTCGGG-TACAGGGCAGAGCAGTAAT-GGCTGCACT-GATA  183

seq1  ACGGGCAAGGTGGAGGTTGGATTGTCCTCCAACCGCCCCACCTACCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCAAGGTGGAGGTTGGATTGTCCTCCAACCGCCCCACCTACCTTCT  233

seq1  TCTGGTTAGGTTTTAAGCTTTCTTCCTCCACTTGATATTTCTGAATAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTAGGTTTTAAGCTTTCTTCCTCCACTTGATATTTCTGAATAGTC  283

seq1  TTGAATATATTTCCTTTTCTAGAAAGTCAGTAAGTATATATATTATATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATATATTTCCTTTTCTAGAAAGTCAGTAAGTATATATATTATATAG  333

seq1  CTGGAGAGAAGTGGAGAGAGATTAATATAATACTGCTTTCTCTATATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAGAAGTGGAGAGAGATTAATATAATACTGCTTTCTCTATATTTC  383

seq1  TTTCATATTGTTGTTTAAATAGTTATATTATGTGTGTATTTGTGCATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTGTTGTTTAAATAGTTATATTATGTGTGTATTTGTGCATGAG  433

seq1  CAGAGATTAGGGGCAACTTTCAGGAGTCAGTCACTCACCAGGTGGAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTAGGGGCAACTTTCAGGAGTCAGTCACTCACCAGGTGGAGTGC  483

seq1  AGGGATCAAGCACAGGTCATTAGGTTTAGGAATAAGTTCCTTTATCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCAAGCACAGGTCATTAGGTTTAGGAATAAGTTCCTTTATCTGCT  533

seq1  GAGCCATCTCATCTCTTTCTGTCATAGTTACTGTGTTTGATGTCAGGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCATCTCTTTCTGTCATAGTTACTGTGTTTGATGTCAGGTCC  583

seq1  CACCACCCTCTTAGCTTCTGCTTCTAGATTCAGACCTGGGTGAGCTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCTCTTAGCTTCTGCTTCTAGATTCAGACCTGGGTGAGCTGCTA  633

seq1  AGAAAACCAGGAATGCTTCTCTAAATATCCCAATCCTAGGGAAGAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACCAGGAATGCTTCTCTAAATATCCCAATCCTAGGGAAGAAAACC  683

seq1  ACAGCCACCTATACCACCCCGTGCAGACAGGCACTAGCACTTGGACTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACCTATACCACCCCGTGCAGACAGGCACTAGCACTTGGACTAAG  733

seq1  GTAAGACAAGCTGTACCAGTAAAGGACACTCAGGGTTAGTGTAAGCGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACAAGCTGTACCAGTAAAGGACACTCAGGGTTAGTGTAAGCGTAT  783

seq1  GTAAAATGACTCACTAATACCATCTGAGTTGGCTGCCTATTATAGTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGACTCACTAATACCATCTGAGTTGGCTGCCTATTATAGTCATA  833

seq1  TCTTTTTTATATTAATTTTATGTCACCTCTCTGTTAAATGTAAGTACAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTATATTAATTTTATGTCACCTCTCTGTTAAATGTAAGTACAAG  883

seq1  AAAATTTTAAGTTATAGGTATGATTCATAGTTGCTGTTCTCTCTTTACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAAGTTATAGGTATGATTCATAGTTGCTGTTCTCTCTTTACTT  933

seq1  CTTTTAGATGACATTCACCTATGCCAAAGTACTAATAGTGTTATGTCAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGATGACATTCACCTATGCCAAAGTACTAATAGTGTTATGTCAGT  983

seq1  CGCTTTGAATTC  1012
      ||||||||||||
seq2  CGCTTTGAATTC  995