BAC Information

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BAC

Clone NameB6Ng01-020K20
Chromosome11 (Build37)
Map Location 102,186,024 - 102,354,592
singlet/doubletdoublet
Overlap geneSlc4a1, Rap2ip, Slc25a39, Grn, BC025575, Itga2b
Upstream geneAoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1, LOC194960, Sost, Dusp3, 1700006E09Rik, Mpp3, Cd300lg, Mpp2, Ppy, Pyy, LOC100040687, LOC666411, Nags, Tmem101, Lsm12, G6pc3, Hdac5, BC030867, Asb16, 2010008E23Rik, Ubtf
Downstream geneMdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020K20.bB6Ng01-020K20.g
ACCDH853409DH853410
length654448
definitionDH853409|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K20, 5' end.DH853410|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,186,024 - 102,186,677)(102,354,139 - 102,354,592)
sequence
gaattcatgatcttgtctacactagcactgaacactcctgcctcaatatc
acgagtgttgagatgatatatttgtaattgcttaaacttttttcttttct
ttttttttgcattttggagagaggtttgccctctgtgtagcccagggtgt
cctgaaactcatggcaagtctcctgcttccatttcccaagtgttgggatt
tttgcattactgagcacaacctagtgtatcctagaaaattcttcagaggg
agaaagaacccacgcgctcccacgcgcacatccacaagcatgcgtgcaca
cacacactttgtctcttaccacctaatatcctttttttttttactttttt
ttatttaattaggtattttctccattaacatttcaaatgctatcccaaaa
gtcccccttacccccccccccacctaatatcttgtgttactcaaggacta
tggcaaagttgccatgaacagatgtagtattcgattttcagctttcagaa
ctgtggggcagggggaactagtaccccagacaacccccttttcttttttt
tttttttttttttttaagatttatttatttattatatgtaagtacactgt
agctgtctttagacactccagaagagggcatcagatctcattatgggtag
ttgt
tttgatctaaattgggaaagaaagttggagtcagataaggaaaatagaat
cttaactgagtcttggaacccatgatgtggctcagtagatgagggagggt
ctgctgttcgctcagcctaatgacacaggtcatttcctgcgaccccgtgg
gggtggggaaacggagaacagtaaataaatgaatacatacatacatacac
acatacatacatgaatacatacatacatacatgcataaagaagtgattcc
ttggggctggagaaatagctcagcaggtaaaagcactgactgctcttcca
gaggtcctgagttcaaatcccagcaatcacaaggtggctcacaaccatcc
ttaatctgacgctctcttctggggtgtctgaagacagctacatgtattta
taataaataaataaatcttcttggtgtttgtttgtttttcaagacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_102186024_102186677
seq2: B6Ng01-020K20.b_43_696

seq1  GAATTCATGATCTTGTCTACACTAGCACTGAACACTCCTGCCTCAATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATCTTGTCTACACTAGCACTGAACACTCCTGCCTCAATATC  50

seq1  ACGAGTGTTGAGATGATATATTTGTAATTGCTTAAACTTTTTTCTTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTGTTGAGATGATATATTTGTAATTGCTTAAACTTTTTTCTTTTCT  100

seq1  TTTTTTTTGCATTTTGGAGAGAGGTTTGCCCTCTGTGTAGCCCAGGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGCATTTTGGAGAGAGGTTTGCCCTCTGTGTAGCCCAGGGTGT  150

seq1  CCTGAAACTCATGGCAAGTCTCCTGCTTCCATTTCCCAAGTGTTGGGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTCATGGCAAGTCTCCTGCTTCCATTTCCCAAGTGTTGGGATT  200

seq1  TTTGCATTACTGAGCACAACCTAGTGTATCCTAGAAAATTCTTCAGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTACTGAGCACAACCTAGTGTATCCTAGAAAATTCTTCAGAGGG  250

seq1  AGAAAGAACCCACGCGCTCCCACGCGCACATCCACAAGCATGCGTGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAACCCACGCGCTCCCACGCGCACATCCACAAGCATGCGTGCACA  300

seq1  CACACACTTTGTCTCTTACCACCTAATATCCTTTTTTTTTTTACTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTTTGTCTCTTACCACCTAATATCCTTTTTTTTTTTACTTTTTT  350

seq1  TTATTTAATTAGGTATTTTCTCCATTAACATTTCAAATGCTATCCCAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAATTAGGTATTTTCTCCATTAACATTTCAAATGCTATCCCAAAA  400

seq1  GTCCCCCTTACCCCCCCCCCCACCTAATATCTTGTGTTACTCAAGGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCCTTACCCCCCCCCCCACCTAATATCTTGTGTTACTCAAGGACTA  450

seq1  TGGCAAAGTTGCCATGAACAGATGTAGTATTCGATTTTCAGCTTTCAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGTTGCCATGAACAGATGTAGTATTCGATTTTCAGCTTTCAGAA  500

seq1  CTGTGGGGCAGGGGGAACTAGTACCCCAGACAACCCCCTTTTCTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGCAGGGGGAACTAGTACCCCAGACAACCCCCTTTTCTTTTTTT  550

seq1  TTTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGT  600

seq1  AGCTGTCTTTAGACACTCCAGAAGAGGGCATCAGATCTCATTATGGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTTTAGACACTCCAGAAGAGGGCATCAGATCTCATTATGGGTAG  650

seq1  TTGT  654
      ||||
seq2  TTGT  654

seq1: chr11_102354139_102354592
seq2: B6Ng01-020K20.g_61_514 (reverse)

seq1  CCTGTCTTGAAAAACAAACAAACACCAAGAAGATTTATTTATTTATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTTGAAAAACAAACAAACACCAAGAAGATTTATTTATTTATTATA  50

seq1  AATACATGTAGCTGTCTTCAGACACCCCAGAAGAGAGCGTCAGATTAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGTAGCTGTCTTCAGACACCCCAGAAGAGAGCGTCAGATTAAGG  100

seq1  ATGGTTGTGAGCCACCTTGTGATTGCTGGGATTTGAACTCAGGACCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAGCCACCTTGTGATTGCTGGGATTTGAACTCAGGACCTCTG  150

seq1  GAAGAGCAGTCAGTGCTTTTACCTGCTGAGCTATTTCTCCAGCCCCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCAGTCAGTGCTTTTACCTGCTGAGCTATTTCTCCAGCCCCAAGG  200

seq1  AATCACTTCTTTATGCATGTATGTATGTATGTATTCATGTATGTATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTCTTTATGCATGTATGTATGTATGTATTCATGTATGTATGTGT  250

seq1  GTATGTATGTATGTATTCATTTATTTACTGTTCTCCGTTTCCCCACCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGTATGTATTCATTTATTTACTGTTCTCCGTTTCCCCACCCCC  300

seq1  ACGGGGTCGCAGGAAATGACCTGTGTCATTAGGCTGAGCGAACAGCAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGTCGCAGGAAATGACCTGTGTCATTAGGCTGAGCGAACAGCAGAC  350

seq1  CCTCCCTCATCTACTGAGCCACATCATGGGTTCCAAGACTCAGTTAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCATCTACTGAGCCACATCATGGGTTCCAAGACTCAGTTAAGAT  400

seq1  TCTATTTTCCTTATCTGACTCCAACTTTCTTTCCCAATTTAGATCAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCCTTATCTGACTCCAACTTTCTTTCCCAATTTAGATCAAAGA  450

seq1  ATTC  454
      ||||
seq2  ATTC  454