BAC Information

Click to search

BAC

Clone NameB6Ng01-020N19
Chromosome11 (Build37)
Map Location 5,381,729 - 5,495,350
singlet/doubletdoublet
Overlap geneLOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36
Upstream geneMtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016
Downstream geneLOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N19.bB6Ng01-020N19.g
ACCDH853537DH853538
length922936
definitionDH853537|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N19, 5' end.DH853538|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,494,428 - 5,495,350)(5,381,729 - 5,382,351)
sequence
taatgagaatatatttcatattcatattactggacttgttcttggttaaa
tgactccaaagggaaatgctttcacttctttcctcagtgagacaccagtg
cgtgactggtgactcggagcccatcactaatgcccttgatccacactttc
tctgactatacacctcaatcctgggaaagcatggattcctgagggaagat
tggatcgactcaaaccgttaacattacagtcctattcctcgagcctggca
aacaccctgtgtggagtcagcaccctggcctcagcttggcctggcaggac
ttctctaggccacagattcaacttgccctgtcctaggtgactgggtatga
attatccctggagtggatgagagatctgctaccagtacagacagatgctt
taactagctcaagttattttagccctgtttaacagaagtcttgaattttg
tccagaacttatttcttttttaaaatttttatttatgcttcatttacatg
ttacatccttatcgaagtttctcctcccccctctcctccaagtccctacc
cccgccccccatctcccctctgaattctttattctatatgctcttctaga
ttctgcgctaaggatttcaaatgacctttatcacatatgctacaatcctc
aaagtgctcagcccttttctaaatctgtgagcaccacccacaagttgtcc
ctgcacagaccctgtctgttgatgctgttgtgatagcctggagtaagtcg
cactattcccatctttatcctctccactgggtgggtgtttctatattcaa
ccaccatatttctagaacactaatctattaatggggagagcgctattgcc
atagacttaagggtcattcattgctgccgcttgggcgtggtggcacaacg
ccttaatccagcactcgggagg
gaattccatgccatgtaatctcttaagcacgatctggaggggctaagagc
caggtggctgcttgaggttaaaacaatgtcttttggaaatagctgaaaac
cctttctaattacaagtgtcaatgactagtgaagggtctctagaccagtg
gttctcacccttccaaatactatgaccccttaatacagttccttgtgtta
tggtgacccctgaccataataaaatttgctttgtcactactgtataactg
taattttgggactgttgcgaattttaatgtaaatatctaatagacaactg
atatttgactgggggggtcaagacccacaggttgagaaccttcagaacca
gcggtacaaaactgtaggatgaatatgcatctattaaagaatttttaaag
tccacttatgttaaaacatcaacaatagccatgttgctcctgaggtgctg
aggactctctagtcgctcagttcatgagtatggggaccacagcaaaccaa
cccagcaccaaaaacctagagagttcacggaatgcagctcattcctcgtc
aaccaggaaagcctgcaaaggctggttctggtatcagaggaggagaaacc
cgatcttttgggtttagattccatcttagagaacccgacctaaggttgaa
ctcaagttgactaacaggccagtacccagcaccagtttccaggttattcc
ccaacaaaattgtacctccaggttacaagcctgcccttgctaagaaccac
caatcagagggaaacagaagttaagtttacagtttggctgccagcaccag
ccaattatgataaaggccacaatactctccccacccccaaattagatgcc
caccaggctagaaacactcactccctgcttgccatttcctataaaacctt
gttccgatgaggttccaggctgctcacaaaccatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_5494428_5495350
seq2: B6Ng01-020N19.b_55_976 (reverse)

seq1  CCTCCCGAGTGCTGGGATTAAAGGCG-TGTGCCACCACGCCCAAGCGGCA  49
      ||||||||||||| ||||| |||||| |||||||||||||||||||||||
seq2  CCTCCCGAGTGCT-GGATT-AAGGCGTTGTGCCACCACGCCCAAGCGGCA  48

seq1  GCAATGAATGACCCTTAAGTCTATGGCCATAGCGCTCTCCCCATTAATAG  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCAATGAATGACCCTTAAGTCTATGGCAATAGCGCTCTCCCCATTAATAG  98

seq1  ATTAGTGTTCTAGTAATATGGTGGTTGAATATAGAAACACCCACCCAGTG  149
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTCTAGAAATATGGTGGTTGAATATAGAAACACCCACCCAGTG  148

seq1  GAGAGGATAAAGATGGGAATAGTGCGACTTACTCCAGGCTATCACAACAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATAAAGATGGGAATAGTGCGACTTACTCCAGGCTATCACAACAG  198

seq1  CATCAACAGACAGGGTCTGTGCAGGGACAACTTGTGGGTGGTGCTCACAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACAGACAGGGTCTGTGCAGGGACAACTTGTGGGTGGTGCTCACAG  248

seq1  ATTTAGAAAAGGGCTGAGCACTTTGAGGATTGTAGCATATGTGATAAAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAAAAGGGCTGAGCACTTTGAGGATTGTAGCATATGTGATAAAGG  298

seq1  TCATTTGAAATCCTTAGCGCAGAATCTAGAAGAGCATATAGAATAAAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAAATCCTTAGCGCAGAATCTAGAAGAGCATATAGAATAAAGAA  348

seq1  TTCAGAGGGGAGATGGGGGGCGGGGGTAGGGACTTGGAGGAGAGGGGGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGGGAGATGGGGGGCGGGGGTAGGGACTTGGAGGAGAGGGGGGA  398

seq1  GGAGAAACTTCGATAAGGATGTAACATGTAAATGAAGCATAAATAAAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACTTCGATAAGGATGTAACATGTAAATGAAGCATAAATAAAAAT  448

seq1  TTTAAAAAAGAAATAAGTTCTGGACAAAATTCAAGACTTCTGTTAAACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAGAAATAAGTTCTGGACAAAATTCAAGACTTCTGTTAAACAG  498

seq1  GGCTAAAATAACTTGAGCTAGTTAAAGCATCTGTCTGTACTGGTAGCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAATAACTTGAGCTAGTTAAAGCATCTGTCTGTACTGGTAGCAGA  548

seq1  TCTCTCATCCACTCCAGGGATAATTCATACCCAGTCACCTAGGACAGGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATCCACTCCAGGGATAATTCATACCCAGTCACCTAGGACAGGGC  598

seq1  AAGTTGAATCTGTGGCCTAGAGAAGTCCTGCCAGGCCAAGCTGAGGCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGAATCTGTGGCCTAGAGAAGTCCTGCCAGGCCAAGCTGAGGCCAG  648

seq1  GGTGCTGACTCCACACAGGGTGTTTGCCAGGCTCGAGGAATAGGACTGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGACTCCACACAGGGTGTTTGCCAGGCTCGAGGAATAGGACTGTA  698

seq1  ATGTTAACGGTTTGAGTCGATCCAATCTTCCCTCAGGAATCCATGCTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAACGGTTTGAGTCGATCCAATCTTCCCTCAGGAATCCATGCTTTC  748

seq1  CCAGGATTGAGGTGTATAGTCAGAGAAAGTGTGGATCAAGGGCATTAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATTGAGGTGTATAGTCAGAGAAAGTGTGGATCAAGGGCATTAGTG  798

seq1  ATGGGCTCCGAGTCACCAGTCACGCACTGGTGTCTCACTGAGGAAAGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTCCGAGTCACCAGTCACGCACTGGTGTCTCACTGAGGAAAGAAG  848

seq1  TGAAAGCATTTCCCTTTGGAGTCATTTAACCAAGAACAAGTCCAGTAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCATTTCCCTTTGGAGTCATTTAACCAAGAACAAGTCCAGTAATA  898

seq1  TGAATATGAAATATATTCTCATTA  923
      ||||||||||||||||||||||||
seq2  TGAATATGAAATATATTCTCATTA  922

seq1: chr11_5381729_5382351
seq2: B6Ng01-020N19.g_66_688

seq1  GAATTCCATGCCATGTAATCTCTTAAGCACGATCTGGAGGGGCTAAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCCATGTAATCTCTTAAGCACGATCTGGAGGGGCTAAGAGC  50

seq1  CAGGTGGCTGCTTGAGGTTAAAACAATGTCTTTTGGAAATAGCTGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGGCTGCTTGAGGTTAAAACAATGTCTTTTGGAAATAGCTGAAAAC  100

seq1  CCTTTCTAATTACAAGTGTCAATGACTAGTGAAGGGTCTCTAGACCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTAATTACAAGTGTCAATGACTAGTGAAGGGTCTCTAGACCAGTG  150

seq1  GTTCTCACCCTTCCAAATACTATGACCCCTTAATACAGTTCCTTGTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACCCTTCCAAATACTATGACCCCTTAATACAGTTCCTTGTGTTA  200

seq1  TGGTGACCCCTGACCATAATAAAATTTGCTTTGTCACTACTGTATAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACCCCTGACCATAATAAAATTTGCTTTGTCACTACTGTATAACTG  250

seq1  TAATTTTGGGACTGTTGCGAATTTTAATGTAAATATCTAATAGACAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTGGGACTGTTGCGAATTTTAATGTAAATATCTAATAGACAACTG  300

seq1  ATATTTGACTGGGGGGGTCAAGACCCACAGGTTGAGAACCTTCAGAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGACTGGGGGGGTCAAGACCCACAGGTTGAGAACCTTCAGAACCA  350

seq1  GCGGTACAAAACTGTAGGATGAATATGCATCTATTAAAGAATTTTTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTACAAAACTGTAGGATGAATATGCATCTATTAAAGAATTTTTAAAG  400

seq1  TCCACTTATGTTAAAACATCAACAATAGCCATGTTGCTCCTGAGGTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTATGTTAAAACATCAACAATAGCCATGTTGCTCCTGAGGTGCTG  450

seq1  AGGACTCTCTAGTCGCTCAGTTCATGAGTATGGGGACCACAGCAAACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTCTAGTCGCTCAGTTCATGAGTATGGGGACCACAGCAAACCAA  500

seq1  CCCAGCACCAAAAACCTAGAGAGTTCACGGAATGCAGCTCATTCCTCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCACCAAAAACCTAGAGAGTTCACGGAATGCAGCTCATTCCTCGTC  550

seq1  AACCAGGAAAGCCTGCAAAGGCTGGTTCTGGTATCAGAGGAGGAGAAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGAAAGCCTGCAAAGGCTGGTTCTGGTATCAGAGGAGGAGAAACC  600

seq1  CGATCTTTTGGGTTTAGATTCCA  623
      |||||||||||||||||||||||
seq2  CGATCTTTTGGGTTTAGATTCCA  623