BAC Information

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BAC

Clone NameB6Ng01-020N21
Chromosome11 (Build37)
Map Location 88,350,823 - 88,510,654
singlet/doubletdoublet
Overlap geneMsi2
Upstream geneTex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020N21.bB6Ng01-020N21.g
ACCDH853541DH853542
length877858
definitionDH853541|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N21, 5' end.DH853542|Mus musculus domesticus DNA, BAC clone: B6Ng01-020N21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,350,823 - 88,351,704)(88,509,795 - 88,510,654)
sequence
gaattctgagacgcgcagcctaggacctcaggtcgttgccggagcccagg
gaaggaacaaccacagaagaacgtgtgtttgaaggcgtgacatccatccg
gagcagcagagaaaaatgtagcatcctggcaattaacaaggaagacagga
acccaaaggcctttgccacattacaggcttaatggcccatgatgctgtgg
gggccaacatccccctcttgctgaattccaacttggctagcttggcactg
tgcctgcctggcttgcccctaaagaggagatgctctaaaggataaggctc
ctgcaggagacgtccttgccctgtgctggaagcttttttgatcaataaaa
ggaatttctctctcaagtatgcagactcacagggattccttttttttttt
ttcctgtctccggcctcacagtcctgcttggaagtcaattgtgggcagtg
gactgcctcagtctcttagcagagaatccttcagagtgggagaggaagat
gtttggggttcagataaacatggcgctcacccactgcagaaagtaggggc
aggattagctcctaggaagacatcagcccacttctgctggatgacagtga
cccaaatcctaaggtggacacagaagggtgagggggtgagagggcaacag
gaatggagggtgtggtgtgcagagtgtgagggaattaaggcaggctcaaa
gaagccaggaatgctagacaatggcagaagaaggaagctagtccagactg
cactgtttccttgttacgtggccctatttggaaacagagttgtcgaacgt
ttagttagctatgttaatatgagtcagtgtggaagaggaagacctgaatc
ttatgggtctgggtcctaacaagaaag
gaattctctagaaggaaaaacaagagaggccctgttctgagtgaggtgaa
gtgaggggtggttgtggcctgactccccactctcgagtctggatgtgtga
actgacaggtggggacctgtaaacagctttattttgatcctcttagcctc
tgcccttgtctggtgtgttcacagtacccgtggcaccctctgcctatggt
gttcaagaaggaagcataggaggaatggctgaagacaggagagtgtctga
agggaaaaaaatgaccatccaaatccaaggctcaaattgtgattcttttt
ttttttttttttttttcaaattgtgattcttgaagaaggttcgcagctag
ggacccagacgtccagtcttgttgtctggctacattttgttccctaaaca
agtggggatggcttgcccacctgttggggactggggaacctgttcacaag
ggctatacagcctgctgcttgcaaggttgggtaccaagcaggctctgctg
gaggcgtctctcagtaaacaggagcctgtgggcaggcctactgggaggat
gtgtctctgaggttcactggcagtgaaatatggggcaaatggtcgtttta
tgcccatatttctgtccaggtgtctggggtgcataaataaagggcaagta
gcctggcggatcctgtgcagagttgttataccttcgttgcttagagaccc
tgaaggctgcataactcatggtctggctctgccttgggggtctggttggc
acgattcctagtgcctccctcatccagcttctggagatctctccacagac
tgtgtgctgcgtgagccttctattcacagcttgggatctgtgtaccagaa
ctgatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88350823_88351704
seq2: B6Ng01-020N21.b_46_922

seq1  GAATTCTGAGACGCGCAGCCTAGGACCTCAGGTCGTTGCCGGAGCCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGACGCGCAGCCTAGGACCTCAGGTCGTTGCCGGAGCCCAGG  50

seq1  GAAGGAACAACCACAGAAGAACGTGTGTTTGAAGGCGTGACATCCATCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAACAACCACAGAAGAACGTGTGTTTGAAGGCGTGACATCCATCCG  100

seq1  GAGCAGCAGAGAAAAATGTAGCATCCTGGCAATTAACAAGGAAGACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCAGAGAAAAATGTAGCATCCTGGCAATTAACAAGGAAGACAGGA  150

seq1  ACCCAAAGGCCTTTGCCACATTACAGGCTTAATGGCCCATGATGCTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGGCCTTTGCCACATTACAGGCTTAATGGCCCATGATGCTGTGG  200

seq1  GGGCCAACATCCCCCTCTTGCTGAATTCCAACTTGGCTAGCTTGGCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAACATCCCCCTCTTGCTGAATTCCAACTTGGCTAGCTTGGCACTG  250

seq1  TGCCTGCCTGGCTTGCCCCTAAAGAGGAGATGCTCTAAAGGATAAGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCCTGGCTTGCCCCTAAAGAGGAGATGCTCTAAAGGATAAGGCTC  300

seq1  CTGCAGGAGACGTCCTTGCCCTGTGCTGGAAGCTTTTTTGATCAATAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGAGACGTCCTTGCCCTGTGCTGGAAGCTTTTTTGATCAATAAAA  350

seq1  GGAATTTCTCTCTCAAGTATGCAGACTCACAGGGATTCCTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCTCTCTCAAGTATGCAGACTCACAGGGATTCCTTTTTTTTTTT  400

seq1  TTCCTGTCTCCGGCCTCACAGTCCTGCTTGGAAGTCAATTGTGGGCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTCCGGCCTCACAGTCCTGCTTGGAAGTCAATTGTGGGCAGTG  450

seq1  GACTGCCTCAGTCTCTTAGCAGAGAATCCTTCAGAGTGGGAGAGGAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCTCAGTCTCTTAGCAGAGAATCCTTCAGAGTGGGAGAGGAAGAT  500

seq1  GTTTGGGGTTCAGATAAACATGGCGCTCACCCACTGCAGAAAGTAGGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGGTTCAGATAAACATGGCGCTCACCCACTGCAGAAAGTAGGGGC  550

seq1  AGGATTAGCTCCTAGGAAGACATCAGCCCACTTCTGCTGGATGACAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAGCTCCTAGGAAGACATCAGCCCACTTCTGCTGGATGACAGTGA  600

seq1  CCCAAATCCTAAGGTGGACACAGAAGGGTGAGGGGGTGAGAGGGCAACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCCTAAGGTGGACACAGAAGGGTGAGGGGGTGAGAGGGCAACAG  650

seq1  GAATGGAGGGTGTGGTGTGCAGAGTGTGAGGGAATTAAGGCAGGCTCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAGGGTGTGGTGTGCAGAGTGTGAGGGAATTAAGGCAGGCTCAAA  700

seq1  GAAGCCAGGAAGGCTAGACAAGGGCAGAAGAAGGAAGCTAGTCCAGACTG  750
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  GAAGCCAGGAATGCTAGACAATGGCAGAAGAAGGAAGCTAGTCCAGACTG  750

seq1  CACTGTTTCCTTGTTACGTGGCCCTATTTGGAAACAGAGTTGTCGAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||| | 
seq2  CACTGTTTCCTTGTTACGTGGCCCTATTTGGAAACAGAGTTGTCGAACG-  799

seq1  TTTAGTTAGCTATGTTAAAATGAGGTCAGTGTGGAAGAGGGAAGGACCTG  850
      |||||||||||||||||| |||| ||||||||||||||||  | ||||||
seq2  TTTAGTTAGCTATGTTAATATGA-GTCAGTGTGGAAGAGG--AAGACCTG  846

seq1  GATCTAATGGGTCTGGGGTCCTAACAAGAAAG  882
       |||| |||||||| |||||||||||||||||
seq2  AATCTTATGGGTCT-GGGTCCTAACAAGAAAG  877

seq1: chr11_88509795_88510654
seq2: B6Ng01-020N21.g_67_924 (reverse)

seq1  AAGACTCAGTTCT-GTACCCAGATTCCCAAGCTGTGAATAGAAGGCTCAC  49
      |||| |||||||| |||| |||| ||||||||||||||||||||||||||
seq2  AAGA-TCAGTTCTGGTACACAGA-TCCCAAGCTGTGAATAGAAGGCTCAC  48

seq1  GCAGCACACAGTCCTGTGGAGAGATCTCCAGGAAGCTGGCTGAGGGAGGC  99
      |||||||||||| ||||||||||||||||| |||||||| ||||||||||
seq2  GCAGCACACAGT-CTGTGGAGAGATCTCCA-GAAGCTGGATGAGGGAGGC  96

seq1  ACT-GGAATCGTGCCAACCAGACCCCCAAGGCAGAGCCAGACCATGAGTT  148
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAATCGTGCCAACCAGACCCCCAAGGCAGAGCCAGACCATGAGTT  146

seq1  ATGCAGCCTTCAGGGTCTCTAAGCAACGAAGGTATAACAACTCTGCACAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCCTTCAGGGTCTCTAAGCAACGAAGGTATAACAACTCTGCACAG  196

seq1  GATCCGCCAGGCTACTTGCCCTTTATTTATGCACCCCAGACACCTGGACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCGCCAGGCTACTTGCCCTTTATTTATGCACCCCAGACACCTGGACA  246

seq1  GAAATATGGGCATAAAACGACCATTTGCCCCATATTTCACTGCCAGTGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGGGCATAAAACGACCATTTGCCCCATATTTCACTGCCAGTGAA  296

seq1  CCTCAGAGACACATCCTCCCAGTAGGCCTGCCCACAGGCTCCTGTTTACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGAGACACATCCTCCCAGTAGGCCTGCCCACAGGCTCCTGTTTACT  346

seq1  GAGAGACGCCTCCAGCAGAGCCTGCTTGGTACCCAACCTTGCAAGCAGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACGCCTCCAGCAGAGCCTGCTTGGTACCCAACCTTGCAAGCAGCA  396

seq1  GGCTGTATAGCCCTTGTGAACAGGTTCCCCAGTCCCCAACAGGTGGGCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTATAGCCCTTGTGAACAGGTTCCCCAGTCCCCAACAGGTGGGCAA  446

seq1  GCCATCCCCACTTGTTTAGGGAACAAAATGTAGCCAGACAACAAGACTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCCCACTTGTTTAGGGAACAAAATGTAGCCAGACAACAAGACTGG  496

seq1  ACGTCTGGGTCCCTAGCTGCGAACCTTCTTCAAGAATCACAATTTGAAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGGGTCCCTAGCTGCGAACCTTCTTCAAGAATCACAATTTGAAAA  546

seq1  AAAAAAAAAAAAAAAAAGAATCACAATTTGAGCCTTGGATTTGGATGGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGAATCACAATTTGAGCCTTGGATTTGGATGGTC  596

seq1  ATTTTTTTCCCTTCAGACACTCTCCTGTCTTCAGCCATTCCTCCTATGCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTCCCTTCAGACACTCTCCTGTCTTCAGCCATTCCTCCTATGCT  646

seq1  TCCTTCTTGAACACCATAGGCAGAGGGTGCCACGGGTACTGTGAACACAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTGAACACCATAGGCAGAGGGTGCCACGGGTACTGTGAACACAC  696

seq1  CAGACAAGGGCAGAGGCTAAGAGGATCAAAATAAAGCTGTTTACAGGTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGGCAGAGGCTAAGAGGATCAAAATAAAGCTGTTTACAGGTCC  746

seq1  CCACCTGTCAGTTCACACATCCAGACTCGAGAGTGGGGAGTCAGGCCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGTCAGTTCACACATCCAGACTCGAGAGTGGGGAGTCAGGCCACA  796

seq1  ACCACCCCTCACTTCACCTCACTCAGAACAGGGCCTCTCTTGTTTTTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCTCACTTCACCTCACTCAGAACAGGGCCTCTCTTGTTTTTCCT  846

seq1  TCTAGAGAATTC  860
      ||||||||||||
seq2  TCTAGAGAATTC  858