BAC Information

Click to search

BAC

Clone NameB6Ng01-021E24
Chromosome11 (Build37)
Map Location 38,503,283 - 38,638,667
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021E24.bB6Ng01-021E24.g
ACCDH853853DH853854
length1,1001,090
definitionDH853853|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E24, 5' end.DH853854|Mus musculus domesticus DNA, BAC clone: B6Ng01-021E24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,637,563 - 38,638,667)(38,503,283 - 38,504,387)
sequence
gaattccttacatttgggatgacctaagtaattaggaacaactagtaaat
gataacgggtgggatcaggactgttttcaaacactgatcaagtctggttt
aacactttggaaatggattggttgctagggaatcttgtctcctgttgcaa
agctgagcatgcagtcctagcctttggcatgcttctggagtacagcattt
gcagggagagcatctgacctgccttgtcaaacaatgcagggtggagtaaa
ggcacacaataaataaataaataatcaaaccttcagaggccttttcttgg
ttttcccatttaatttttcatttgggttataaatggcatctcagacagat
ggaagtctcctgggtttgtcagagttctctgttggcttaatcacgagcat
gacacgtgtagaagcgaggcactgagagaattagtgatttcatggacaga
gggaggatgatcaattattcaccacatgccaccaaatactagaagcatga
ccaccgtttgcctctcatcttctctcctctatacacacaaacaaagctct
tctcgccagtcagtgcacaacggagaaaaatcctccgttcatgcaattct
cattttcatcaatgtcattctatcgaactttaagcctggacaggcttaat
tggggtactgagttcatatacctgctctccgtggctggcttgcacttgga
cctttctatttctttcttcctttctttccttttaaaagagggaacaaaaa
gtgagacccacataggtgaccttgagaataaatttattgtgtaaattcac
ctaagaaatgcctgtaagatccggaaggcttttgatgaattccttctggt
tttctgtgcttagagacattttctaacatgaaaagaagctagaaattatg
ctgacatgaaacaaccttctagctacttgttttctttataagttcaggta
gcagtcattccatctatagataaatgctcttgagtacaggaatgtgggta
ccaaggcaagcccttcaggtaatcattgtttgcaacttccattgtcattt
ataacgtttgtaatcctggttaggcattcaactggcaaaaaagactttcc

gaattccaatattcagataaaaatgaaattgaacccaggctcctcagtga
acttataaagttattactggaagaatgataatcaacctataaagaatttc
ataccaaagggaggtgggaagggaaatatatatattgtaaaacacaagga
agctgcctttaaataaactttggactaaatagtttgtagccaactgccaa
aactatcaaaagtcatcatatcatgtatttagaaaacctaaactgagtat
aaaataatagaacattttcatcaagtctagctaagttatttcttaatagt
gcagttatattgatagaaacccctataagctcacagtatctggataacaa
aagatattcagtaacgtatttttattattcttctaaaatataaaagtaga
gaaattttgatgatgaaattactatcattggacaaaccagctattgacaa
tcagtttcctgagtatccctaattaaaaaaaaaaaagtaatgtttttaag
aactacaaccattggagttgctacagatttctatttccagattggtgtgg
ggtgtttttgccttgtgccactcaacatattctgaatgaattgcctgcag
acattaatcttttgttgaatgggttgtaaatggttctaactctgtagata
tgacctatgaagggttaagtgagaggcaagccctaaaatgcaggtataaa
gcagtgaagaagggcaagtgctttatccatcccagacaaaagtcagtcat
gaattttgaacaatatttgaaactaaactcatgtacactaatgaatatta
ttaaaaatattgaaacacgggaaagttatgtaaattaaaacatacatgtg
acatgcattttctctatgtgtctattatctgtatgtaaaatccttctttc
tctgattttatgtccaaattgattcattcatgaataggtacttcaatcat
ctatttttctgctcaactgtaagaaccatatcccatgttcagtgtgaatc
ttttcccttgtacctggaaacagatgaagatcagtttggacaccagagcc
acaaaaaccgttttttctgtagctttttttgttttataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_38637563_38638667
seq2: B6Ng01-021E24.b_45_1144 (reverse)

seq1  GGAAAGTTCTTTTTTTGCAAGTTGAAATGCCTAACCAAGATTACAAACGT  50
      |||||||   |||||||| ||||| |||||||||||| ||||||||||||
seq2  GGAAAGT--CTTTTTTGCCAGTTG-AATGCCTAACCAGGATTACAAACGT  47

seq1  TATAAATGACAGATGGAAGTTGCAAACAATGATTACCCTGAAGGGCTTGC  100
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  TATAAATGACA-ATGGAAGTTGCAAACAATGATTA-CCTGAAGGGCTTGC  95

seq1  CTTGGTACCCACATTCCTGTACTCAAGAGCATTTATCTATAGATGGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTACCCACATTCCTGTACTCAAGAGCATTTATCTATAGATGGAATG  145

seq1  ACTGCTACCTGAACTTATAAAGAAAACAAGTAGCTAGAAGGTTGTTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACCTGAACTTATAAAGAAAACAAGTAGCTAGAAGGTTGTTTCAT  195

seq1  GTCAGCATAATTTCTAGCTTCTTTTCATGTTAGAAAATGTCTCTAAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCATAATTTCTAGCTTCTTTTCATGTTAGAAAATGTCTCTAAGCAC  245

seq1  AGAAAACCAGAAGGAATTCATC-AAAGCCTTCCGGATCTTACAGGCATTT  299
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAAAACCAGAAGGAATTCATCAAAAGCCTTCCGGATCTTACAGGCATTT  295

seq1  CTTAGGTGAATTTTACACAATAAATTTATTCTCAAGGTCACCTATGTGGG  349
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTGAA-TTTACACAATAAATTTATTCTCAAGGTCACCTATGTGGG  344

seq1  TCTCACTTTTTGTTCCCTCTTTTAAAAGGAAAGAAAGGAAGAAAGAAATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTTTTGTTCCCTCTTTTAAAAGGAAAGAAAGGAAGAAAGAAATA  394

seq1  GAAAGGTCCAAGTGCAAGCCAGCCACGGAGAGCAGGTATATGAACTCAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTCCAAGTGCAAGCCAGCCACGGAGAGCAGGTATATGAACTCAGT  444

seq1  ACCCCAATTAAGCCTGTCCAGGCTTAAAGTTCGATAGAATGACATTGATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAATTAAGCCTGTCCAGGCTTAAAGTTCGATAGAATGACATTGATG  494

seq1  AAAATGAGAATTGCATGAACGGAGGATTTTTCTCCGTTGTGCACTGACTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGAATTGCATGAACGGAGGATTTTTCTCCGTTGTGCACTGACTG  544

seq1  GCGAGAAGAGCTTTGTTTGTGTGTATAGAGGAGAGAAGATGAGAGGCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAAGAGCTTTGTTTGTGTGTATAGAGGAGAGAAGATGAGAGGCAAA  594

seq1  CGGTGGTCATGCTTCTAGTATTTGGTGGCATGTGGTGAATAATTGATCAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGTCATGCTTCTAGTATTTGGTGGCATGTGGTGAATAATTGATCAT  644

seq1  CCTCCCTCTGTCCATGAAATCACTAATTCTCTCAGTGCCTCGCTTCTACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCTGTCCATGAAATCACTAATTCTCTCAGTGCCTCGCTTCTACA  694

seq1  CGTGTCATGCTCGTGATTAAGCCAACAGAGAACTCTGACAAACCCAGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCATGCTCGTGATTAAGCCAACAGAGAACTCTGACAAACCCAGGAG  744

seq1  ACTTCCATCTGTCTGAGATGCCATTTATAACCCAAATGAAAAATTAAATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATCTGTCTGAGATGCCATTTATAACCCAAATGAAAAATTAAATG  794

seq1  GGAAAACCAAGAAAAGGCCTCTGAAGGTTTGATTATTTATTTATTTATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACCAAGAAAAGGCCTCTGAAGGTTTGATTATTTATTTATTTATTG  844

seq1  TGTGCCTTTACTCCACCCTGCATTGTTTGACAAGGCAGGTCAGATGCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTTTACTCCACCCTGCATTGTTTGACAAGGCAGGTCAGATGCTCT  894

seq1  CCCTGCAAATGCTGTACTCCAGAAGCATGCCAAAGGCTAGGACTGCATGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAAATGCTGTACTCCAGAAGCATGCCAAAGGCTAGGACTGCATGC  944

seq1  TCAGCTTTGCAACAGGAGACAAGATTCCCTAGCAACCAATCCATTTCCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTGCAACAGGAGACAAGATTCCCTAGCAACCAATCCATTTCCAA  994

seq1  AGTGTTAAACCAGACTTGATCAGTGTTTGAAAACAGTCCTGATCCCACCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAAACCAGACTTGATCAGTGTTTGAAAACAGTCCTGATCCCACCC  1044

seq1  GTTATCATTTACTAGTTGTTCCTAATTACTTAGGTCATCCCAAATGTAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCATTTACTAGTTGTTCCTAATTACTTAGGTCATCCCAAATGTAAG  1094

seq1  GAATTC  1105
      ||||||
seq2  GAATTC  1100

seq1: chr11_38503283_38504387
seq2: B6Ng01-021E24.g_67_1156

seq1  GAATTCCAATATTCAGATAAAAATGAAATTGAACCCAGGCTCCTCAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATTCAGATAAAAATGAAATTGAACCCAGGCTCCTCAGTGA  50

seq1  ACTTATAAAGTTATTACTGGAAGAATGATAATCAACCTATAAAGAATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAAAGTTATTACTGGAAGAATGATAATCAACCTATAAAGAATTTC  100

seq1  ATACCAAAGGGAGGTGGGAAGGGAAATATATATATTGTAAAACACAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAAGGGAGGTGGGAAGGGAAATATATATATTGTAAAACACAAGGA  150

seq1  AGCTGCCTTTAAATAAACTTTGGACTAAATAGTTTGTAGCCAACTGCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTTTAAATAAACTTTGGACTAAATAGTTTGTAGCCAACTGCCAA  200

seq1  AACTATCAAAAGTCATCATATCATGTATTTAGAAAACCTAAACTGAGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATCAAAAGTCATCATATCATGTATTTAGAAAACCTAAACTGAGTAT  250

seq1  AAAATAATAGAACATTTTCATCAAGTCTAGCTAAGTTATTTCTTAATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAGAACATTTTCATCAAGTCTAGCTAAGTTATTTCTTAATAGT  300

seq1  GCAGTTATATTGATAGAAACCCCTATAAGCTCACAGTATCTGGATAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTATATTGATAGAAACCCCTATAAGCTCACAGTATCTGGATAACAA  350

seq1  AAGATATTCAGTAACGTATTTTTATTATTCTTCTAAAATATAAAAGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTCAGTAACGTATTTTTATTATTCTTCTAAAATATAAAAGTAGA  400

seq1  GAAATTTTGATGATGAAATTACTATCATTGGACAAACCAGCTATTGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTGATGATGAAATTACTATCATTGGACAAACCAGCTATTGACAA  450

seq1  TCAGTTTCCTGAGTATCCCTAATTAAAAAAAAAAAAGTAATGTTTTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCCTGAGTATCCCTAATTAAAAAAAAAAAAGTAATGTTTTTAAG  500

seq1  AACTACAACCATTGGAGTTGCTACAGATTTCTATTTCCAGATTGGTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACAACCATTGGAGTTGCTACAGATTTCTATTTCCAGATTGGTGTGG  550

seq1  GGTGTTTTTGCCTTGTGCCACTCAACATATTCTGAATGAATTGCCTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTTGCCTTGTGCCACTCAACATATTCTGAATGAATTGCCTGCAG  600

seq1  ACATTAATCTTTTGTTGAATGGGTTGTAAATGGTTCTAACTCTGTAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATCTTTTGTTGAATGGGTTGTAAATGGTTCTAACTCTGTAGATA  650

seq1  TGACCTATGAAGGGTTAAGTGAGAGGCAAGCCCTAAAATGCAGGTATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTATGAAGGGTTAAGTGAGAGGCAAGCCCTAAAATGCAGGTATAAA  700

seq1  GCAGTGAAGAAGGGCAAGTGC-TTATCCAT-CCAGACAAAAGTCAGTCAT  748
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  GCAGTGAAGAAGGGCAAGTGCTTTATCCATCCCAGACAAAAGTCAGTCAT  750

seq1  GAATTTTGAACAATA-TTGAAACTAAACTCATGTACACTAATGAAATAAT  797
      ||||||||||||||| |||||||||||||||||||||||||||||   ||
seq2  GAATTTTGAACAATATTTGAAACTAAACTCATGTACACTAATGAA--TAT  798

seq1  TATTAAAAATATTGAAACACGGGAAAGTTATGTAAATTAAAAACATACAT  847
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATTAAAAATATTGAAACACGGGAAAGTTATGTAAATT-AAAACATACAT  847

seq1  GTGACATGCATTTTCTCTATGTGTCTATATATCTGTATGTAAAATCC-TC  896
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  GTGACATGCATTTTCTCTATGTGTCTAT-TATCTGTATGTAAAATCCTTC  896

seq1  TTTCTCTTGATTTTTATGTCCAAATTGATTCACTCCATGAATAGGTACTT  946
      |||||| ||| ||||||||||||||||||||| | |||||||||||||||
seq2  TTTCTC-TGA-TTTTATGTCCAAATTGATTCA-TTCATGAATAGGTACTT  943

seq1  CAATCATCTATTTTTCGTGCTCAACTGTAAGACCAATATCCCATGTTCAG  996
      |||||||||||||||| ||||||||||||||| | |||||||||||||||
seq2  CAATCATCTATTTTTC-TGCTCAACTGTAAGAACCATATCCCATGTTCAG  992

seq1  TGTTGAAATCTTTTCCCTTGTACCTGGATACAGATAGAAGATTCAGGTTT  1046
      |||   |||||||||||||||||||||| |||||| ||||| ||| ||||
seq2  TGT--GAATCTTTTCCCTTGTACCTGGAAACAGAT-GAAGA-TCA-GTTT  1037

seq1  GGACACCAAGAGGCCACAAAAACTGTTTTTTTCTTGTTTGCTTTTTTTTG  1096
      ||||||| ||| ||||||||||| | ||||||||   | || ||||||||
seq2  GGACACC-AGA-GCCACAAAAACCG-TTTTTTCT--GTAGC-TTTTTTTG  1081

seq1  TTTTTTAAT  1105
      |||| ||||
seq2  TTTTATAAT  1090