BAC Information

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BAC

Clone NameB6Ng01-021J04
Chromosome11 (Build37)
Map Location 67,156,816 - 67,233,302
singlet/doubletdoublet
Overlap geneMyh13
Upstream geneGm879, LOC668323, A530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8
Downstream geneGas7, Rcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021J04.bB6Ng01-021J04.g
ACCDH854040DH854041
length1,0681,001
definitionDH854040|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J04, 5' end.DH854041|Mus musculus domesticus DNA, BAC clone: B6Ng01-021J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,156,816 - 67,157,897)(67,232,313 - 67,233,302)
sequence
gaattccctgagtatgcaattttttttgtacttatctgttgtcagtgaca
agaatatacacctaggaataaaaatgcagggtcacatggtgtccttgagt
cttttccagttggtgttatagccatgcaataactatgcttatttgtctaa
gaaaggacttcatagtttaagttagcctagaattcagtatatagcccagc
atgacccaaacttgtgatcctcctgcctcaaatccccatatgctaggatg
tgggagtgtactgctacagccagcctctgtgtctaatcatttgggaaact
acagaagttgttccccatatggatacagaagagcctgtaccaacttccaa
ggttcccagtcctttcatgctctctttactaatagatgtggtacattaaa
caattgtccaagacacagttttaaaatattgaccatttaagtacaagctt
ttagtaattaatttatttaatttaaaatgaatgcaagataatcattcagt
agataattacataacagtataagagttaatgtctagttatactttgggct
gagaattgtaataaatgagcacaatttaaatttgaatgacaaaatgattt
tctttgagtctgaccagggtatctctaagagtctcttagggacaatgtta
cttagcaacaatgccaagacattatttgaggaacctatggatggatatag
atctgaaaaaggggctttcttgccttccctccctgatccaaatatgcact
cctgctaacctcatacagagaggccaagtgacagagtgtaaaggaaaaga
gagggactatttctcccaaagctgaataaagattaagttttcagaggcta
aatagaaaagatagctactcagtaaacttagaccaagcatcactgacttc
acactgagacaagaaattagttgttctccagaaaagagggggaaaagact
atagaatatttgtgagaaaaaatagagtttgttcttttcagttcttctca
tgaaggcagattcagatactgagagctgtctatgatctcagcactgggta
gtaaagcagattgctaca
gaattccaaaggccgaggccaagcacaaatcattgatttttttttttttt
tgtaatataaagaaaaaaatgtagtgagtggaggaactaagtagagttca
ttcaagatggagggaggagctgtggtacattcatgttgtaaagggtgtga
cagcggttctgagtcagtatagggacggacaagggaaaatctttcctaag
ggcattaggaagtcagagtgagaatccaggagagaggacgtcaactgagt
gctacactcagtcttatcatttagccattgggtttctcctgagaaggacc
gatcccccaatccagcttcactcaagagcaagcagaatttcccagctgct
acctagaagtttctgaggaagtttttattcaaatgaatcatcctttgaga
gagagagagagagagagagagagagagagagagagagagacagagacaga
gacagagacagagacagagacagagagacagagacagagacagagacaga
gagagacagagagagacagagagagacagagagaggcagatagataggca
agcaaacagacaatccatgtttatatgcatgtgtttgtggatgcaagagg
ttaatattgtgtcttttatcaatctcttattgttggcgacagagtctttt
cattgtaccttcaacctagtacccaccaatttggctaggctggctggctg
gcaggcccccttgaatcctttgcttccacagtgctggggattacaggcat
ctgccatgatgcccattttacttgaatctggagacctaagctcagttccc
ttattttactgaagtgcccacccccagcctcctcagccccctggtgtttt
agacaccctggcatcccccagagtcctttctgtgggtaggttaatatttg
aaaacaatgttcaactgtgggtacagaggtcaaagttcttagttttaggg
aaagttggatcaaaaaaaaagggatggacttccaaacctctcttcctttg
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_67156816_67157897
seq2: B6Ng01-021J04.b_45_1112

seq1  GAATTCCCTGAGTATGCAATTTTTTTTGTACTTATCTGTTGTCAGTGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGAGTATGCAATTTTTTTTGTACTTATCTGTTGTCAGTGACA  50

seq1  AGAATATACACCTAGGAATAAAAATGCAGGGTCACATGGTGTCCTTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATACACCTAGGAATAAAAATGCAGGGTCACATGGTGTCCTTGAGT  100

seq1  CTTTTCCAGTTGGTGTTATAGCCATGCAATAACTATGCTTATTTGTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAGTTGGTGTTATAGCCATGCAATAACTATGCTTATTTGTCTAA  150

seq1  GAAAGGACTTCATAGTTTAAGTTAGCCTAGAATTCAGTATATAGCCCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACTTCATAGTTTAAGTTAGCCTAGAATTCAGTATATAGCCCAGC  200

seq1  ATGACCCAAACTTGTGATCCTCCTGCCTCAAATCCCCATATGCTAGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCAAACTTGTGATCCTCCTGCCTCAAATCCCCATATGCTAGGATG  250

seq1  TGGGAGTGTACTGCTACAGCCAGCCTCTGTGTCTAATCATTTGGGAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGTACTGCTACAGCCAGCCTCTGTGTCTAATCATTTGGGAAACT  300

seq1  ACAGAAGTTGTTCCCCATATGGATACAGAAGAGCCTGTACCAACTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTTGTTCCCCATATGGATACAGAAGAGCCTGTACCAACTTCCAA  350

seq1  GGTTCCCAGTCCTTTCATGCTCTCTTTACTAATAGATGTGGTACATTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCCAGTCCTTTCATGCTCTCTTTACTAATAGATGTGGTACATTAAA  400

seq1  CAATTGTCCAAGACACAGTTTTAAAATATTGACCATTTAAGTACAAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTCCAAGACACAGTTTTAAAATATTGACCATTTAAGTACAAGCTT  450

seq1  TTAGTAATTAATTTATTTAATTTAAAATGAATGCAAGATAATCATTCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATTAATTTATTTAATTTAAAATGAATGCAAGATAATCATTCAGT  500

seq1  AGATAATTACATAACAGTATAAGAGTTAATGTCTAGTTATACTTTGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTACATAACAGTATAAGAGTTAATGTCTAGTTATACTTTGGGCT  550

seq1  GAGAATTGTAATAAATGAGCACAATTTAAATTTGAATGACAAAATGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGTAATAAATGAGCACAATTTAAATTTGAATGACAAAATGATTT  600

seq1  TCTTTGAGTCTGACCAGGGTATCTCTAAGAGTCTCTTAGGGACAATGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGTCTGACCAGGGTATCTCTAAGAGTCTCTTAGGGACAATGTTA  650

seq1  CTTAGCAACAATGCCAAGACATTATTTGAGGAACCTATGGATGGATATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCAACAATGCCAAGACATTATTTGAGGAACCTATGGATGGATATAG  700

seq1  ATCTGAAAAAGGGGCTTTCTTGCCTTCCCTCCCTGATCCAAATATGCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAAAGGGGCTTTCTTGCCTTCCCTCCCTGATCCAAATATGCACT  750

seq1  CCTGCTAACCTCATACAGAGAGGCCAAGTGACAGAGTGT-AAGGAAAAGA  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CCTGCTAACCTCATACAGAGAGGCCAAGTGACAGAGTGTAAAGGAAAAGA  800

seq1  GAGGGACTATTTCTCCCAAAGCTGAATAAAGATTAAG-TTTCAGAGGCTA  848
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGGGACTATTTCTCCCAAAGCTGAATAAAGATTAAGTTTTCAGAGGCTA  850

seq1  AATAGAAAAGATAGCTACTCAGTAAACTTAGACCAAGCATCACTGACTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAGATAGCTACTCAGTAAACTTAGACCAAGCATCACTGACTTC  900

seq1  ACACTGAGACAAGAAATTAGGTGGTTTCTCCCAGAAAAGGAGGGGGGAAT  948
      |||||||||||||||||||| ||  |||| |||||||||   ||||||| 
seq2  ACACTGAGACAAGAAATTAGTTG--TTCT-CCAGAAAAG--AGGGGGAAA  945

seq1  AGACTATAGAATATTTGTGAGAAAAAAATAGAGTTTTGTTCTTTTCAGTT  998
      ||||||||||||||||||||| ||||||||||| |||||||||||||| |
seq2  AGACTATAGAATATTTGTGAG-AAAAAATAGAG-TTTGTTCTTTTCAG-T  992

seq1  TCTTCCTCATGAAGGCAGATTCCAGGATACTGAGAGCTGTTCCTATGATC  1048
      |||| |||||||||||||||||   |||||||||||||||  ||||||||
seq2  TCTT-CTCATGAAGGCAGATTC--AGATACTGAGAGCTGT--CTATGATC  1037

seq1  TCAGCACTGGGGTAGTAGAGGCAGGATTGCTACA  1082
      |||||||| |||||||| | ||| ||||||||||
seq2  TCAGCACT-GGGTAGTA-AAGCA-GATTGCTACA  1068

seq1: chr11_67232313_67233302
seq2: B6Ng01-021J04.g_67_1067 (reverse)

seq1  GCAAAGGAACGAG-TGTCTGGAAGTCCATCCCTTTCTTCTCTGCTCAAGC  49
      ||||||||| |||  || ||||||||||||||||| || | || || | |
seq2  GCAAAGGAA-GAGAGGTTTGGAAGTCCATCCCTTT-TTTTTTGATCCAAC  48

seq1  TTT-CCTGAAACTAAGAACCTTGACCTCTGTAGCCACAGTTG-ACACTGG  97
      ||| ||| ||||||||||| |||||||||||| ||||||||| ||| || 
seq2  TTTCCCTAAAACTAAGAACTTTGACCTCTGTACCCACAGTTGAACATTGT  98

seq1  TCTTCAATACTTACCTACCCACAG-AAGGACTCTGGGTGATGCCAGGGTG  146
      | |  |||| | |||||||||||| |||||||||||| ||||||||||||
seq2  TTTCAAATATTAACCTACCCACAGAAAGGACTCTGGGGGATGCCAGGGTG  148

seq1  TCTAAAACAC--AGGGGCTG-GGGGGCT-GGGGTTGGCAC-TCAGTAAAA  191
      ||||||||||   ||||||| || |||| ||||| ||||| |||||||||
seq2  TCTAAAACACCAGGGGGCTGAGGAGGCTGGGGGTGGGCACTTCAGTAAAA  198

seq1  TAA-GGAACTGAGCTTAGGTCTCCAGATTCAAGT-AAATGGGCATCATGG  239
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAAGGGAACTGAGCTTAGGTCTCCAGATTCAAGTAAAATGGGCATCATGG  248

seq1  CAGATGCCTGTAAT-CCCAGCACTGTGGAAGCAAAGGATTCAAGGGGGCC  288
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGATGCCTGTAATCCCCAGCACTGTGGAAGCAAAGGATTCAAGGGGGCC  298

seq1  TGCCAGCCAGCCAGCCTAGCCAAATTGGTGGGTACTAGGTTGAAGGTACA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCCAGCCAGCCTAGCCAAATTGGTGGGTACTAGGTTGAAGGTACA  348

seq1  ATG-AAAGACTCTGTCGCCAACAATAAGAGATTGATAAAAGACACAATAT  387
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGACTCTGTCGCCAACAATAAGAGATTGATAAAAGACACAATAT  398

seq1  TAACCTCTTGCATCCACAAACACATGCATATAAACATGGATTGTCTGTTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTTGCATCCACAAACACATGCATATAAACATGGATTGTCTGTTT  448

seq1  GCTTGCCTATCTATCTGCCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTATCTATCTGCCTCTCTCTGTCTCTCTCTGTCTCTCTCTGTCT  498

seq1  CTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTCTGTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCT  548

seq1  GTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  598

seq1  CTCTCTCAAAGGATGATTCATTTGAATAAAAACTTCCTCAGAAACTTCTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCAAAGGATGATTCATTTGAATAAAAACTTCCTCAGAAACTTCTA  648

seq1  GGTAGCAGCTGGGAAATTCTGCTTGCTCTTGAGTGAAGCTGGATTGGGGG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAGCTGGGAAATTCTGCTTGCTCTTGAGTGAAGCTGGATTGGGGG  698

seq1  ATCGGTCCTTCTCAGGAGAAACCCAATGGCTAAATGATAAGACTGAGTGT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTCCTTCTCAGGAGAAACCCAATGGCTAAATGATAAGACTGAGTGT  748

seq1  AGCACTCAGTTGACGTCCTCTCTCCTGGATTCTCACTCTGACTTCCTAAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAGTTGACGTCCTCTCTCCTGGATTCTCACTCTGACTTCCTAAT  798

seq1  GCCCTTAGGAAAGATTTTCCCTTGTCCGTCCCTATACTGACTCAGAACCG  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAGGAAAGATTTTCCCTTGTCCGTCCCTATACTGACTCAGAACCG  848

seq1  CTGTCACACCCTTTACAACATGAATGTACCACAGCTCCTCCCTCCATCTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACACCCTTTACAACATGAATGTACCACAGCTCCTCCCTCCATCTT  898

seq1  GAATGAACTCTACTTAGTTCCTCCACTCACTACATTTTTTTCTTTATATT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACTCTACTTAGTTCCTCCACTCACTACATTTTTTTCTTTATATT  948

seq1  ACAAAAAAAAAAAAAAATCAATGATTTGTGCTTGGCCTCGGCCTTTGGAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAAAAAAAATCAATGATTTGTGCTTGGCCTCGGCCTTTGGAA  998

seq1  TTC  990
      |||
seq2  TTC  1001