BAC Information

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BAC

Clone NameB6Ng01-022A09
Chromosome11 (Build37)
Map Location 36,834,509 - 36,983,972
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022A09.bB6Ng01-022A09.g
ACCDH854367DH854368
length9751,057
definitionDH854367|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A09, 5' end.DH854368|Mus musculus domesticus DNA, BAC clone: B6Ng01-022A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,834,509 - 36,835,469)(36,982,906 - 36,983,972)
sequence
gaattcacataaacgatgaatacagggagtgtgttttgttttactcttgg
gagtgagggatcaccgtggccttttggcttgcatcagcccctctttcaca
gaggaagagggttgttggaaaacaggagacagtataatccacccctgtaa
agaaatctcctcaagtgccactctccagtctaggggcacacacgtttcct
aggcagtgcaggtaggaaggaacgaaatggaaaccgcaatctaaatataa
tttatacatcacagccagggtagggagaggtctattacttagatatgtct
gaggagaagaaaaataatacagcccaattcgtaagcgtttaagtcttggc
ttaaggatttacttcagcaccaactgggaatcacatcaaagggaggcagg
gacttcttcccagcaagctggcctgaatttacctatgcagacatcttgag
atggttgtcccagagtagtagccctcttggtttgtttgctgagtttccta
gcacattattaatgggcaaaatcattaaagtagtatgtagggcttcacaa
gcaatactatgcttggcttctttgagatgtggctgaagataaaccgtcta
catcctgatttgaatagagtcatctttgacacactcaaattacaatatgt
acatttacactcacactctacgtttctttctgactgtcattgcaaaacca
tttgtccttgataagtgatcgtgtgtgcacaaagctggttctcagaccat
gagctagatggagttccaatagggagaagcttattcccttaatgaaggga
tgggcagagtgagagaaaagccagtgcttaaagattcatccggaacagca
aagaatacatacgatgtagaagacacagaaaagtggctagctctagcccc
actgcattccagaaactggagaaatcctagcccaggagacataggcgaag
attagagagaataagaaatctggga
gaattccttaggtaacaatagaaagaggtttgctggggttcccctagaga
gtctggccttcaccctcagagtctatttggaagaagacatttctccactc
atctaagtagcatagagtttctttgttactttttgtaatcattaaatata
aaaactgattatagaatccttttgagatcatgtgcttttcgcttttctaa
aacagctgttttcaaatgctttatcatcaatagctaacttatctatgcct
catcaccagagaaagaacaaagaccctctaccaagaccaaccagatatct
tgctctttttgtgtaaaacatattggagaagcagcagcattttgatggtg
ctatgcctggtgactttgccacagaagaatgcaaaaagagatttagaaaa
aaaaattagaagaatttaatctgtactcatgaataattatttggctatga
ttcccttgtttaccgagtaattatggttttaaaatctgtttgggttagca
tttagcatttcttcatccaagggaatcataacattgatggaatatctatc
agtccattcttatgagctaaagtaattaaaaaaatctttattattctctg
tatgatagtaacctataataaatttagaatgagttgttcaaatcttgact
atcaaagcaatgtcctgcttctctacataaaggatggaggatttgaagaa
tttttataagactttaataaactcataatttcagagtcactttatactgg
aaggaatgtatattagatttttagctacatcagccaacatgtagctaacc
acaagattatgcagagcgttgtcgtgttatatagacctagagaacataac
ttagttacacaatacaaagaacacactttacatgtgaaacatgagttacg
atgccatgccattttgtcctgatttgttcaggaagtctctccctttaata
tgtgatgtgtcctactattctatccaccgcacgattattaattatctctg
ctaacaaagtgcccttttgttatgtttgtctttggtcatgtctaaaaaat
atgtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36834509_36835469
seq2: B6Ng01-022A09.b_45_1006

seq1  GAATTCACATAAACGATGAATACAGGGAGTGTGTTTTGTTTTACTCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATAAACGATGAATACAGGGAGTGTGTTTTGTTTTACTCTTGG  50

seq1  GAGTGAGGGATCACCGTGGCCTTTTGGCTTGCATCAGCCCCTCTTTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGGGATCACCGTGGCCTTTTGGCTTGCATCAGCCCCTCTTTCACA  100

seq1  GAGGAAGAGGGTTGTTGGAAAACAGGAGACAGTATAATCCACCCCTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGGGTTGTTGGAAAACAGGAGACAGTATAATCCACCCCTGTAA  150

seq1  AGAAATCTCCTCAAGTGCCACTCTCCAGTCTAGGGGCACACACGTTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTCCTCAAGTGCCACTCTCCAGTCTAGGGGCACACACGTTTCCT  200

seq1  AGGCAGTGCAGGTAGGAAGGAACGAAATGGAAACCGCAATCTAAATATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTGCAGGTAGGAAGGAACGAAATGGAAACCGCAATCTAAATATAA  250

seq1  TTTATACATCACAGCCAGGGTAGGGAGAGGTCTATTACTTAGATATGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATCACAGCCAGGGTAGGGAGAGGTCTATTACTTAGATATGTCT  300

seq1  GAGGAGAAGAAAAATAATACAGCCCAATTCGTAAGCGTTTAAGTCTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGAAAAATAATACAGCCCAATTCGTAAGCGTTTAAGTCTTGGC  350

seq1  TTAAGGATTTACTTCAGCACCAACTGGGAATCACATCAAAGGGAGGCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATTTACTTCAGCACCAACTGGGAATCACATCAAAGGGAGGCAGG  400

seq1  GACTTCTTCCCAGCAAGCTGGCCTGAATTTACCTATGCAGACATCTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTCCCAGCAAGCTGGCCTGAATTTACCTATGCAGACATCTTGAG  450

seq1  ATGGTTGTCCCAGAGTAGTAGCCCTCTTGGTTTGTTTGCTGAGTTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTCCCAGAGTAGTAGCCCTCTTGGTTTGTTTGCTGAGTTTCCTA  500

seq1  GCACATTATTAATGGGCAAAATCATTAAAGTAGTATGTAGGGCTTCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTATTAATGGGCAAAATCATTAAAGTAGTATGTAGGGCTTCACAA  550

seq1  GCAATACTATGCTTGGCTTCTTTGAGATGTGGCTGAAGATAAACCGTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACTATGCTTGGCTTCTTTGAGATGTGGCTGAAGATAAACCGTCTA  600

seq1  CATCCTGATTTGAATAGAGTCATCTTTGACACACTCAAATTACAATATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGATTTGAATAGAGTCATCTTTGACACACTCAAATTACAATATGT  650

seq1  ACATTTACACTCACACTCTACGTTTCTTTCTGACTGTCATTGCAAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACACTCACACTCTACGTTTCTTTCTGACTGTCATTGCAAAACCA  700

seq1  TTTGTCCTTGATAAGTGATCGTGTGTGCACAAAGCTGGTTCTCAGACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTGATAAGTGATCGTGTGTGCACAAAGCTGGTTCTCAGACCAT  750

seq1  GAGCTAGATGGAGTTCCAATAGGGAGAAGCTTATTCCCTTAATGAAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGATGGAGTTCCAATAGGGAGAAGCTTATTCCCTTAATGAAGGGA  800

seq1  TGGGCAGAGTGAGAGAAAAGCCAGTGCTTAAAAGATTCATCCGGAACAGC  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGGCAGAGTGAGAGAAAAGCCAGTGCTT-AAAGATTCATCCGGAACAGC  849

seq1  AAAAGAATAACATACGATGTAGAAAGACACAGAAAAGTGGCTAGCTCTAG  900
       ||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  -AAAGAAT-ACATACGATGTAG-AAGACACAGAAAAGTGGCTAGCTCTAG  896

seq1  CCCCAACTGCATTCCAGAAAACTGAAGAAATTCCTAGCCCAGGGAGACAT  950
      |||| |||||||||||| |||||| ||||| |||||||||| ||||||||
seq2  CCCC-ACTGCATTCCAG-AAACTGGAGAAA-TCCTAGCCCA-GGAGACAT  942

seq1  AGGC---------AGAGAAT  961
      ||||         |||||||
seq2  AGGCGAAGATTAGAGAGAAT  962

seq1: chr11_36982906_36983972
seq2: B6Ng01-022A09.g_71_1127 (reverse)

seq1  ATCACATCTTATTTAGACATTGACTCAAGACAAAACATAACAGAAAGTGC  50
      ||||||| || |||||||| ||||  ||||| |||||||||| |||| | 
seq2  ATCACATATTTTTTAGACA-TGACCAAAGAC-AAACATAACA-AAAG-GG  46

seq1  CACTTTGCTTAGCAGTGATAATTTTATAATCGTGCTGGTTGGATAGAATA  100
      ||||||| ||||||| ||||| || ||||||||||  | |||||||||||
seq2  CACTTTG-TTAGCAGAGATAA-TTAATAATCGTGC--GGTGGATAGAATA  92

seq1  GTGAGACACATCACATATTTAAAGGGAGAGACTTCCTGAACAAATCAGGA  150
      ||  ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTAGGACACATCACATA-TTAAAGGGAGAGACTTCCTGAACAAATCAGGA  141

seq1  CAAAATGGCATGGCATCGTAACTCATGTTTCACATGTAAAGTGTTGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAAATGGCATGGCATCGTAACTCATGTTTCACATGTAAAGTG-TGTTCT  190

seq1  TTGTATTGTGTAACTAAGTTATGTTCTCTAGGTCTATATAACACGACAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGTGTAACTAAGTTATGTTCTCTAGGTCTATATAACACGACAAC  240

seq1  GCTCTGCATAATCTTGTGGTTAGCTACATGTTGGCTGATGTAGCTAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCATAATCTTGTGGTTAGCTACATGTTGGCTGATGTAGCTAAAAA  290

seq1  TCTAATATACATTCCTTCCAGTATAAAGTGACTCTGAAATTATGAGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATATACATTCCTTCCAGTATAAAGTGACTCTGAAATTATGAGTTTA  340

seq1  TTAAAGTCTTATAAAAATTCTTCAAATCCTCCATCCTTTATGTAGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCTTATAAAAATTCTTCAAATCCTCCATCCTTTATGTAGAGAAG  390

seq1  CAGGACATTGCTTTGATAGTCAAGATTTGAACAACTCATTCTAAATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATTGCTTTGATAGTCAAGATTTGAACAACTCATTCTAAATTTAT  440

seq1  TATAGGTTACTATCATACAGAGAATAATAAAGATTTTTTTAATTACTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTTACTATCATACAGAGAATAATAAAGATTTTTTTAATTACTTTA  490

seq1  GCTCATAAGAATGGACTGATAGATATTCCATCAATGTTATGATTCCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAAGAATGGACTGATAGATATTCCATCAATGTTATGATTCCCTTG  540

seq1  GATGAAGAAATGCTAAATGCTAACCCAAACAGATTTTAAAACCATAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGAAATGCTAAATGCTAACCCAAACAGATTTTAAAACCATAATTA  590

seq1  CTCGGTAAACAAGGGAATCATAGCCAAATAATTATTCATGAGTACAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTAAACAAGGGAATCATAGCCAAATAATTATTCATGAGTACAGATT  640

seq1  AAATTCTTCTAATTTTTTTTTCTAAATCTCTTTTTGCATTCTTCTGTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCTAATTTTTTTTTCTAAATCTCTTTTTGCATTCTTCTGTGGC  690

seq1  AAAGTCACCAGGCATAGCACCATCAAAATGCTGCTGCTTCTCCAATATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCACCAGGCATAGCACCATCAAAATGCTGCTGCTTCTCCAATATGT  740

seq1  TTTACACAAAAAGAGCAAGATATCTGGTTGGTCTTGGTAGAGGGTCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACAAAAAGAGCAAGATATCTGGTTGGTCTTGGTAGAGGGTCTTTG  790

seq1  TTCTTTCTCTGGTGATGAGGCATAGATAAGTTAGCTATTGATGATAAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCTGGTGATGAGGCATAGATAAGTTAGCTATTGATGATAAAGC  840

seq1  ATTTGAAAACAGCTGTTTTAGAAAAGCGAAAAGCACATGATCTCAAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAACAGCTGTTTTAGAAAAGCGAAAAGCACATGATCTCAAAAGG  890

seq1  ATTCTATAATCAGTTTTTATATTTAATGATTACAAAAAGTAACAAAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATAATCAGTTTTTATATTTAATGATTACAAAAAGTAACAAAGAAA  940

seq1  CTCTATGCTACTTAGATGAGTGGAGAAATGTCTTCTTCCAAATAGACTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGCTACTTAGATGAGTGGAGAAATGTCTTCTTCCAAATAGACTCT  990

seq1  GAGGGTGAAGGCCAGACTCTCTAGGGGAACCCCAGCAAACCTCTTTCTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGAAGGCCAGACTCTCTAGGGGAACCCCAGCAAACCTCTTTCTAT  1040

seq1  TGTTACCTAAGGAATTC  1067
      |||||||||||||||||
seq2  TGTTACCTAAGGAATTC  1057