BAC Information

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BAC

Clone NameB6Ng01-022I08
Chromosome11 (Build37)
Map Location 28,414,843 - 28,553,890
singlet/doubletdoublet
Overlap geneCcdc85a
Upstream geneLOC100042377, EG626571
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022I08.bB6Ng01-022I08.g
ACCDH854709DH854710
length8131,008
definitionDH854709|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I08, 5' end.DH854710|Mus musculus domesticus DNA, BAC clone: B6Ng01-022I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,553,023 - 28,553,890)(28,414,843 - 28,415,864)
sequence
gaattcacttgcccttctttacttgtgcacagtggtgcctgtgattagat
catggcccaaataaaaggcagagccccctgaatttctctctctctttcct
tctttgtcaccccatcatccttttctctttcctcctttccccccaataaa
catctccctggggctgtgatggcctgatgggatctgtctgtatatgagtt
attgttctaacaaaacacttagtagctgtactgttagttgctagtgaagg
tgaatagagagcctagtctttgagaatcaggaaccagacaggtcatggat
taaataaattccataaccttcttcatcctcagttctactatctaaaatat
taagttagtggttctgttaaatgaaataatgataaaaagacacttagcag
agcatgggtactcatgaaacacatgtcactattagtacaataataattct
acttaacactacaagagattatgccacagaaggcaaaggaagaaatcagc
tattggagttctatacactgcagtttgctcaggggccaagatatatacac
atcaatttatacattagtgatttagttatgcaataacagctggtatctct
agtgaacccacatactgcaggaaacattgtaagatctggaagcctaactt
atggaaacccctgagggaacactgtaacggaattgatcaaagcagagaat
ttatttatcggatgcgggtacccgccaaaagaaaaatgcccctgaaccca
ccatgactttaccgttccaaccttcccttgccaatgtatgcgaaagtgtg
agggttcctctcg
gaattcacctctataagtttttctccatctgtgccaaacatttttggcac
aatgaaactggaattatttctagtgtttttaaatcttcaaaaataaaatt
aaatataaactacattcatccagcaacaccttgcaagtgatggtcttgta
atcttctgtatattttttttcacaaaatcttaagttacaatgagtttaca
taagtaacagtcattcaaacaggcagaaaggtcctgctgatctggctgaa
ataaaacctagccaaataatatctaaatcagctgtatatttcctacacaa
gggataaaaaagacctctactttgaattttacatcaacaacaaagaacaa
atcccctaaaatatatctgagttaatactgcaaatgaattctgataggtg
caatgttttctgtccttatagatgaactattttattttagtcaactgcat
tgtaaattgaattttcttcaggcatttcacagctagagtgactgacaggt
ttattgttgataacactaactctggtcaataggccaccaaggacacattg
tgctcatttaataaatggtaataataagcaggatcctgacatctgaaagg
tattcttattaattaattctcacctgaaatcatacaaggtagtctttttt
ctttctttttttttttttttttttttttcagagctgaggactgaacccag
ggcattgtgcttgctaggcaagtgctaaatcccccaacctccatacgagg
cattctagacagcttaaaaagattacatagtcattttcacccagcaggtt
ggacctgagttctcataaaaatagtgcaacacaaaatgcactcaatatga
aacatttactactacaattcagtgctgtattttaggctatatacacgtat
ttgaattctgactttcctaaaataactagatttaatacaagctttttttt
agttgtcaggattgtacagaaatcatacgattctgcatcctaaacatata
aagtttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_28553023_28553890
seq2: B6Ng01-022I08.b_45_857 (reverse)

seq1  CGAGA-GACCCCTCACACTGTTCTGCCAATCACATTGTGCCTAATGGCGA  49
      ||||| || |||||||||| ||| ||  || |||||| ||  ||  | ||
seq2  CGAGAGGAACCCTCACACT-TTC-GC--AT-ACATTG-GC--AA--GGGA  40

seq1  TGGCTCTGAGAACTGTGTAAAGGTCCACTAGATG--GGCTTCATGAGGTC  97
       ||   |  |||| ||   || |||      |||  || ||||   || |
seq2  AGG---TTGGAACGGT---AAAGTC------ATGGTGGGTTCA--GGGGC  76

seq1  ATTCTCTCCTCTTGTGCAGGGTGACCCCAGCATGCCGGATTAAATAAAGT  147
      ||| |    |||| ||  |||| ||||  |||| |||   ||||||||  
seq2  ATTTT----TCTTTTGGCGGGT-ACCC--GCAT-CCG--ATAAATAAA--  114

seq1  TCCTCTTGCTTTTGTATCAATTCCTGTTTACATGTTGTTCCCTCAGGGGT  197
      | ||| ||||||   |||||||||   |||||   |||||||||||||||
seq2  TTCTC-TGCTTT--GATCAATTCC--GTTACA--GTGTTCCCTCAGGGGT  157

seq1  CTCCAGTAAGTTAAGGCTTTCCAGAGTCTTACAATTAGTCTCCTTGCAGT  247
       |||| |||||| |||| ||||||| |||||||||  || ||| ||||||
seq2  TTCCA-TAAGTT-AGGC-TTCCAGA-TCTTACAAT--GTTTCC-TGCAGT  200

seq1  ATTGTGGGGTCAACTAGTAGATACCATGCTGTTACTTGCATAACTAAATC  297
      | |||||| || ||||| |||||||| ||||||| |||||||||||||||
seq2  A-TGTGGGTTC-ACTAG-AGATACCA-GCTGTTA-TTGCATAACTAAATC  245

seq1  ACTAATGTATAATATTGATGTGTTATATATTCTTGGCCCCTGAGCAAACT  347
      |||||||||||| ||||||||| |||||| ||||||||||||||||||||
seq2  ACTAATGTATAA-ATTGATGTG-TATATA-TCTTGGCCCCTGAGCAAACT  292

seq1  GCAGTGTATAGAACTCCAATAGCTGATTTCTTCCTTTGCCTTCTGTGGCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTATAGAACTCCAATAGCTGATTTCTTCCTTTGCCTTCTGTGGCA  342

seq1  TAATCTCTTGTAGTGTTAAGTAGAATTATTATTGTACTAATAGTGACATG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCTTGTAGTGTTAAGTAGAATTATTATTGTACTAATAGTGACATG  392

seq1  TGTTTCATGAGTACCCATGCTCTGCTAAGTGTCTTTTTATCATTATTTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATGAGTACCCATGCTCTGCTAAGTGTCTTTTTATCATTATTTCA  442

seq1  TTTAACAGAACCACTAACTTAATATTTTAGATAGTAGAACTGAGGATGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGAACCACTAACTTAATATTTTAGATAGTAGAACTGAGGATGAA  492

seq1  GAAGGTTATGGAATTTATTTAATCCATGACCTGTCTGGTTCCTGATTCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTATGGAATTTATTTAATCCATGACCTGTCTGGTTCCTGATTCTC  542

seq1  AAAGACTAGGCTCTCTATTCACCTTCACTAGCAACTAACAGTACAGCTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAGGCTCTCTATTCACCTTCACTAGCAACTAACAGTACAGCTAC  592

seq1  TAAGTGTTTTGTTAGAACAATAACTCATATACAGACAGATCCCATCAGGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTTTGTTAGAACAATAACTCATATACAGACAGATCCCATCAGGC  642

seq1  CATCACAGCCCCAGGGAGATGTTTATTGGGGGGAAAGGAGGAAAGAGAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGCCCCAGGGAGATGTTTATTGGGGGGAAAGGAGGAAAGAGAAA  692

seq1  AGGATGATGGGGTGACAAAGAAGGAAAGAGAGAGAGAAATTCAGGGGGCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATGGGGTGACAAAGAAGGAAAGAGAGAGAGAAATTCAGGGGGCT  742

seq1  CTGCCTTTTATTTGGGCCATGATCTAATCACAGGCACCACTGTGCACAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTATTTGGGCCATGATCTAATCACAGGCACCACTGTGCACAAG  792

seq1  TAAAGAAGGGCAAGTGAATTC  868
      |||||||||||||||||||||
seq2  TAAAGAAGGGCAAGTGAATTC  813

seq1: chr11_28414843_28415864
seq2: B6Ng01-022I08.g_67_1074

seq1  GAATTCACCTCTATAAGTTTTTCTCCATCTGTGCCAAACATTTTTGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCTATAAGTTTTTCTCCATCTGTGCCAAACATTTTTGGCAC  50

seq1  AATGAAACTGGAATTATTTCTAGTGTTTTTAAATCTTCAAAAATAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACTGGAATTATTTCTAGTGTTTTTAAATCTTCAAAAATAAAATT  100

seq1  AAATATAAACTACATTCATCCAGCAACACCTTGCAAGTGATGGTCTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAACTACATTCATCCAGCAACACCTTGCAAGTGATGGTCTTGTA  150

seq1  ATCTTCTGTATATTTTTTTTCACAAAATCTTAAGTTACAATGAGTTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGTATATTTTTTTTCACAAAATCTTAAGTTACAATGAGTTTACA  200

seq1  TAAGTAACAGTCATTCAAACAGGCAGAAAGGTCCTGCTGATCTGGCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAACAGTCATTCAAACAGGCAGAAAGGTCCTGCTGATCTGGCTGAA  250

seq1  ATAAAACCTAGCCAAATAATATCTAAATCAGCTGTATATTTCCTACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTAGCCAAATAATATCTAAATCAGCTGTATATTTCCTACACAA  300

seq1  GGGATAAAAAAGACCTCTACTTTGAATTTTACATCAACAACAAAGAACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAAAAAGACCTCTACTTTGAATTTTACATCAACAACAAAGAACAA  350

seq1  ATCCCCTAAAATATATCTGAGTTAATACTGCAAATGAATTCTGATAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTAAAATATATCTGAGTTAATACTGCAAATGAATTCTGATAGGTG  400

seq1  CAATGTTTTCTGTCCTTATAGATGAACTATTTTATTTTAGTCAACTGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTTTCTGTCCTTATAGATGAACTATTTTATTTTAGTCAACTGCAT  450

seq1  TGTAAATTGAATTTTCTTCAGGCATTTCACAGCTAGAGTGACTGACAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTGAATTTTCTTCAGGCATTTCACAGCTAGAGTGACTGACAGGT  500

seq1  TTATTGTTGATAACACTAACTCTGGTCAATAGGCCACCAAGGACACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTGATAACACTAACTCTGGTCAATAGGCCACCAAGGACACATTG  550

seq1  TGCTCATTTAATAAATGGTAATAATAAGCAGGATCCTGACATCTGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTAATAAATGGTAATAATAAGCAGGATCCTGACATCTGAAAGG  600

seq1  TATTCTTATTAATTAATTCTCACCTGAAATCATACAAGGTAGTCTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTATTAATTAATTCTCACCTGAAATCATACAAGGTAGTCTTTTTT  650

seq1  CTTTCTTTTTTTTTTTTTTTTTTTTTTTCAGAGCTGAGGACTGAACCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTTTTTTTTTTTTTTTTTTCAGAGCTGAGGACTGAACCCAG  700

seq1  GGCATTGTGCTTGCTAGGCAAGTGCTAAATCCCCCAACCTCCATACGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTGTGCTTGCTAGGCAAGTGCTAAATCCCCCAACCTCCATACGAGG  750

seq1  CATTCTAGACAGCTTAAAAAGATTACATAGTCATTTTCACCCAGCAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGACAGCTTAAAAAGATTACATAGTCATTTTCACCCAGCAGGTT  800

seq1  GGACCTGAGTTCTCATAAAAATAGTGCAACACAAAATGCACTCAATATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGAGTTCTCATAAAAATAGTGCAACACAAAATGCACTCAATATGA  850

seq1  AACATTTACTACTACAAATTCAGTGCTGTATTTTAGGCTATAATTAACAC  900
      ||||||||||||||| ||||||||||||||||||||||||||    ||||
seq2  AACATTTACTACTAC-AATTCAGTGCTGTATTTTAGGCTATA---TACAC  896

seq1  GTATTTGAATTCTGACTTTCCTAAAATAACTAGATTTAATACAAAGCTTT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTATTTGAATTCTGACTTTCCTAAAATAACTAGATTTAATAC-AAGCTTT  945

seq1  TTTTTTAATTTGTCAGGATTGTATACAGAAAATCATTAACGATTCTGCAT  1000
      |||||  | ||||||||||||  ||||| |||||||  ||||||||||||
seq2  TTTTT--AGTTGTCAGGATTG--TACAG-AAATCAT--ACGATTCTGCAT  988

seq1  TCTATAACATATAAAATTTTAT  1022
       ||| ||||||| ||| |||||
seq2  CCTA-AACATAT-AAAGTTTAT  1008