BAC Information

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BAC

Clone NameB6Ng01-022O16
Chromosome11 (Build37)
Map Location 116,028,525 - 116,146,572
singlet/doubletdoublet
Overlap geneFbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2
Upstream geneSlc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38
Downstream geneExoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022O16.bB6Ng01-022O16.g
ACCDH854987DH854988
length58980
definitionDH854987|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O16, 5' end.DH854988|Mus musculus domesticus DNA, BAC clone: B6Ng01-022O16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,028,525 - 116,028,582)(116,145,590 - 116,146,572)
sequence
ttgggctagggtaagctcctgccgcaagaaacagattgggggaggggtgg
gagggaga
gaattcaccaccttaaacacggcggacacacctgcatgctcaccagcact
ccccgttctcgggatctgggtggccaggctgatggatggggtcaggttta
ccactggacccaaactctaacacttaaaaccttgagccctctgctaccag
ctgttgggatgctggggagctgggctacaacctgcactcagcccattcag
tggggcctgagccactggatggaggcagctgctctgtgcaaggactagcc
ttggactaagcatgccttttcccaaacacccaacatgttctacaaacacc
caaagacaaagcttagggtccagccccagctactacacctgcccacatgt
cctttcctgctccatttccagcacagggtaaacactgcgctatgagacaa
gccatgtttcttttctttcttaagttttacttgtttgtaagtattctgtg
tgcatggctggtgtgtgtcagaagagggcatcagatcccatttatagatg
gttgtgagccaccatgtgggtgctgggaattgaactcaggacctctggga
gagcagccagtgctcttaactcctgagccatctctttagccccactttat
ctcttctgtatgaccctaattggggttggggtataggctgcgcactttag
tgactttggccaaagtcagcccactccgtgacgtgagatgaagatgtctt
tgcccttttactccttaaacactgtaaagtgccttggctcaagaactcag
ggatagatagagaccaacttgggacactcatgttctgccaaattagcttg
cacccaagccaaaggaactttgaatcagtcactgtagttagtgtataagg
aatggaacttgctggaagttgactttttgaccccaagcaaagttaagatg
ctggatactcgatcctgcccagctgcagcagggaggcaaatccaaggtca
ctaatcagctgccattgaaagcccccctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116028525_116028582
seq2: B6Ng01-022O16.b_55_112

seq1  TTGGGCTAGGGTAAGCTCCTGCCGCAAGAAACAGATTGGGGGAGGGGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTAGGGTAAGCTCCTGCCGCAAGAAACAGATTGGGGGAGGGGTGG  50

seq1  GAGGGAGA  58
      ||||||||
seq2  GAGGGAGA  58

seq1: chr11_116145590_116146572
seq2: B6Ng01-022O16.g_69_1048 (reverse)

seq1  TCAGGGGGGCTCTCATTGGCAGCCTGATTAGTGACCTTGTATTTGCCTCC  50
      ||||||||||| ||| |||||| |||||||||||||||| ||||||||||
seq2  TCAGGGGGGCTTTCAATGGCAG-CTGATTAGTGACCTTGGATTTGCCTCC  49

seq1  CTGCCTGCAGCTGGGCAGGATCGAGTATCCAGCATCTTAACTTTTGCTTG  100
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTG-CTGCAGCTGGGCAGGATCGAGTATCCAGCATCTTAAC-TTTGCTTG  97

seq1  GGGTCAAAAAGTCACCTTCCAGCAAGTTCCATTCCTTATACACTAACTAC  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGGTCAAAAAGTCAACTTCCAGCAAGTTCCATTCCTTATACACTAACTAC  147

seq1  AGTGACTGATTCAAAGTTCCTTTGGCTTGGGTGCAAGCTAATTTGGCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTGATTCAAAGTTCCTTTGGCTTGGGTGCAAGCTAATTTGGCAGA  197

seq1  ACATGAGTGTCCCAAGTTGGTCTCTATCTATCCCTGAGTTCTTGAGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTGTCCCAAGTTGGTCTCTATCTATCCCTGAGTTCTTGAGCCAA  247

seq1  GGCACTTTACAGTGTTTAAGGAGTAAAAGGGCAAAGACATCTTCATCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTACAGTGTTTAAGGAGTAAAAGGGCAAAGACATCTTCATCTCA  297

seq1  CGTCACGGAGTGGGCTGACTTTGGCCAAAGTCACTAAAGTGCGCAGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACGGAGTGGGCTGACTTTGGCCAAAGTCACTAAAGTGCGCAGCCTA  347

seq1  TACCCCAACCCCAATTAGGGTCATACAGAAGAGATAAAGTGGGGCTAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAACCCCAATTAGGGTCATACAGAAGAGATAAAGTGGGGCTAAAG  397

seq1  AGATGGCTCAGGAGTTAAGAGCACTGGCTGCTCTCCCAGAGGTCCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGGAGTTAAGAGCACTGGCTGCTCTCCCAGAGGTCCTGAGT  447

seq1  TCAATTCCCAGCACCCACATGGTGGCTCACAACCATCTATAAATGGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCCCAGCACCCACATGGTGGCTCACAACCATCTATAAATGGGATC  497

seq1  TGATGCCCTCTTCTGACACACACCAGCCATGCACACAGAATACTTACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTCTTCTGACACACACCAGCCATGCACACAGAATACTTACAAA  547

seq1  CAAGTAAAACTTAAGAAAGAAAAGAAACATGGCTTGTCTCATAGCGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAACTTAAGAAAGAAAAGAAACATGGCTTGTCTCATAGCGCAGT  597

seq1  GTTTACCCTGTGCTGGAAATGGAGCAGGAAAGGACATGTGGGCAGGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCCTGTGCTGGAAATGGAGCAGGAAAGGACATGTGGGCAGGTGTA  647

seq1  GTAGCTGGGGCTGGACCCTAAGCTTTGTCTTTGGGTGTTTGTAGAACATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGGGGCTGGACCCTAAGCTTTGTCTTTGGGTGTTTGTAGAACATG  697

seq1  TTGGGTGTTTGGGAAAAGGCATGCTTAGTCCAAGGCTAGTCCTTGCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGTTTGGGAAAAGGCATGCTTAGTCCAAGGCTAGTCCTTGCACAG  747

seq1  AGCAGCTGCCTCCATCCAGTGGCTCAGGCCCCACTGAATGGGCTGAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTGCCTCCATCCAGTGGCTCAGGCCCCACTGAATGGGCTGAGTGC  797

seq1  AGGTTGTAGCCCAGCTCCCCAGCATCCCAACAGCTGGTAGCAGAGGGCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTAGCCCAGCTCCCCAGCATCCCAACAGCTGGTAGCAGAGGGCTC  847

seq1  AAGGTTTTAAGTGTTAGAGTTTGGGTCCAGTGGTAAACCTGACCCCATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTTAAGTGTTAGAGTTTGGGTCCAGTGGTAAACCTGACCCCATCC  897

seq1  ATCAGCCTGGCCACCCAGATCCCGAGAACGGGGAGTGCTGGTGAGCATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCCTGGCCACCCAGATCCCGAGAACGGGGAGTGCTGGTGAGCATGC  947

seq1  AGGTGTGTCCGCCGTGTTTAAGGTGGTGAATTC  983
      |||||||||||||||||||||||||||||||||
seq2  AGGTGTGTCCGCCGTGTTTAAGGTGGTGAATTC  980