BAC Information

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BAC

Clone NameB6Ng01-023N17
Chromosome11 (Build37)
Map Location 113,154,334 - 113,277,079
singlet/doubletdoublet
Overlap geneSlc39a11
Upstream geneEG668396, EG667038, LOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik
Downstream geneSstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4, Sdk2, LOC100041739, LOC634710
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-023N17.bB6Ng01-023N17.g
ACCDH855660DH855661
length1,0451,136
definitionDH855660|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N17, 5' end.DH855661|Mus musculus domesticus DNA, BAC clone: B6Ng01-023N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,154,334 - 113,155,386)(113,275,924 - 113,277,079)
sequence
gaattccaggctctgtagtaggaagtggtttagaaagctaagcaaggacc
aggtcagggaggcctgagctgctgcctgggcagactctccccgtgagttc
cttggggctattggagcagagacttctcagggttcctgtggccaaaagtc
catagtcaaggtgtcagcggggccaggctcttcggtagctctagggagga
tccttcctgcctgttccagctccgggtggcacctgaacattccgggaagg
cttttatttgtatctgtatcagctcaaactctgtcacactgtcacagggg
tgtcttccccccagtgtgcctgtatcgctacaaacccccattgtgtctct
ctaacctcctcaatcctccccaccccgcttatctcataagcattcccagt
catagaggacttgggacccattctagtccaataagtccaataactgaatg
aggcagggcccactgccatggaagaacctccgcagcgctggcagttaaga
catcacccccacccccaatcacctccattctggaactttctaggacaagt
gacccctgctctgtatctctgtctttctcagtgaccttgcccatctgtcc
acctctcccactaggtgggtccaggcaagcagtttcacgacttaggtgcc
accagatcatcttggtcccacctctctggggtgtcccttcccttgctccc
actccctcctccctttctctatccttcccttcctcctttcacctcctctt
tcctccctctgtttctgtatattcttccttacccaccacttcaggggagc
cataaagggctatggttctcaccatagcggcaagcacctatagacacact
caaagccttcctcaacattagcatctgcttcctgtaggactggccgcgta
gactgattctcactgacgtgattttgtacatgttgtctccggctccccag
ggagatagaagatgctcttgacagtgagccgggattcaacgagacttcca
aatactctgatgggggttgactttcgccccccctgaagctgaccc
gaattcagatatagcccatagggaatctcttccattccagcaaccccaag
ccctaagatgctgagtcagaattgctgtgttctcctggcattctggaacc
acccctcccacctgtcagtcaagtgcaaagcccctttgtccacaggcttc
ccaaggcaatgagagaactcaagaaagtcaaggatgcttccacagcaaga
aaaacctgctataactgctatgtctatacatttagtgatgaacctgtcac
aatgtgcatttctttcccaaatgaactgtaggcctctttggtccaaaaaa
acatacaaacaagcaagcaaacaaacaaacaaacaaacaccctactgttt
gggcacctgttaaagttattaattcaaaaggagttggtgactctctgggt
ttagccattctccacagagaccatcatcatgggctcctcgtggtatattt
taattcatctcgtgccttccctgtttgttgagttctgtgtccacaagaga
caccaggcctttgctgcttgcatggttcatgactgctagcgtctgtttgt
gtctgcttggcgttgaaggctgcctgacttcagtagagagccagtcacca
ggtggcaaggctgctcctctgctcagaccctcaaagctcaggactgactt
tgttgaatgaagaagtcttgcccacagcggctgccttactttacagccct
gttgctgtgataaacaccacaaccaaatccaacttatgggaggaaaggat
ttatctggcttccacttccacatcacagtccatcatcaacagaagtctgg
acaggagcctggaggcaggagctgaagcagaagccatgaatggatgcttg
ctggcttgctcctcctggcttgctcctcctggcttgcttcgtctgctttc
taatacacccaggaccatctggtcagaggtgggtcagctcagggcgtgga
cctgctctcgtttatcgttattagtaccaagaaaatgccacacaaaacat
ggccacagtccatctgatgctgcagttctcagtgggttctctcctccagg
gtctttagggggtacactgggtagaaactaagcctagattctatgcccag
ctttgtcacggctctctatatcgtaggctctaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_113154334_113155386
seq2: B6Ng01-023N17.b_44_1088

seq1  GAATTCCAGGCTCTGTAGTAGGAAGTGGTTTAGAAAGCTAAGCAAGGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTCTGTAGTAGGAAGTGGTTTAGAAAGCTAAGCAAGGACC  50

seq1  AGGTCAGGGAGGCCTGAGCTGCTGCCTGGGCAGACTCTCCCCGTGAGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGGGAGGCCTGAGCTGCTGCCTGGGCAGACTCTCCCCGTGAGTTC  100

seq1  CTTGGGGCTATTGGAGCAGAGACTTCTCAGGGTTCCTGTGGCCAAAAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGCTATTGGAGCAGAGACTTCTCAGGGTTCCTGTGGCCAAAAGTC  150

seq1  CATAGTCAAGGTGTCAGCGGGGCCAGGCTCTTCGGTAGCTCTAGGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCAAGGTGTCAGCGGGGCCAGGCTCTTCGGTAGCTCTAGGGAGGA  200

seq1  TCCTTCCTGCCTGTTCCAGCTCCGGGTGGCACCTGAACATTCCGGGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTGCCTGTTCCAGCTCCGGGTGGCACCTGAACATTCCGGGAAGG  250

seq1  CTTTTATTTGTATCTGTATCAGCTCAAACTCTGTCACACTGTCACAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTTGTATCTGTATCAGCTCAAACTCTGTCACACTGTCACAGGGG  300

seq1  TGTCTTCCCCCCAGTGTGCCTGTATCGCTACAAACCCCCATTGTGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCCCCCAGTGTGCCTGTATCGCTACAAACCCCCATTGTGTCTCT  350

seq1  CTAACCTCCTCAATCCTCCCCACCCCGCTTATCTCATAAGCATTCCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCCTCAATCCTCCCCACCCCGCTTATCTCATAAGCATTCCCAGT  400

seq1  CATAGAGGACTTGGGACCCATTCTAGTCCAATAAGTCCAATAACTGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGGACTTGGGACCCATTCTAGTCCAATAAGTCCAATAACTGAATG  450

seq1  AGGCAGGGCCCACTGCCATGGAAGAACCTCCGCAGCGCTGGCAGTTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGCCCACTGCCATGGAAGAACCTCCGCAGCGCTGGCAGTTAAGA  500

seq1  CATCACCCCCACCCCCAATCACCTCCATTCTGGAACTTTCTAGGACAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCCCCACCCCCAATCACCTCCATTCTGGAACTTTCTAGGACAAGT  550

seq1  GACCCCTGCTCTGTATCTCTGTCTTTCTCAGTGACCTTGCCCATCTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTGCTCTGTATCTCTGTCTTTCTCAGTGACCTTGCCCATCTGTCC  600

seq1  ACCTCTCCCACTAGGTGGGTCCAGGCAAGCAG-TTCACGACTTAGGTGCC  649
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCTCTCCCACTAGGTGGGTCCAGGCAAGCAGTTTCACGACTTAGGTGCC  650

seq1  ACCAGATCATCTTGGTCCCACCTCTCTGGGGTGTCCCTTCCCTTGCTCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATCATCTTGGTCCCACCTCTCTGGGGTGTCCCTTCCCTTGCTCCC  700

seq1  ACTCCCTTCCTCCCTTTCTCTATCCTTCCCTTCCTCCTTTCACCTCCTC-  748
      |||||| |||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTCCC-TCCTCCCTTTCTCTATCCTTCCCTTCCTCCTTTCACCTCCTCT  749

seq1  TTCCTCCCTCTG-TTCTGTATATTCTTCCTTACCCACCAC-TCAGGGGAG  796
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  TTCCTCCCTCTGTTTCTGTATATTCTTCCTTACCCACCACTTCAGGGGAG  799

seq1  CCATTAAGGGCTATGGTTCTCACCATAGCGGCAAGCACCTATAGACACAC  846
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAGGGCTATGGTTCTCACCATAGCGGCAAGCACCTATAGACACAC  849

seq1  TCAAAGCCTTCCTCAACATTAGCATCTGCTTCCTGTAGGACTGGCCGCGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCTTCCTCAACATTAGCATCTGCTTCCTGTAGGACTGGCCGCGT  899

seq1  AGACTGATTCTCACTGACGTGATTTTTGTACATTGTTGTCTCCCGGCCTC  946
      |||||||||||||||||||||| ||||||||| ||||||||||  | |||
seq2  AGACTGATTCTCACTGACGTGA-TTTTGTACA-TGTTGTCTCC--GGCTC  945

seq1  CCCAGGGAGATAGAAGATGCTCTTGACAGTTGAGCCGGGATTTCAACAGA  996
      ||||||||||||||||||||||||||||| |||||||||| |||||| ||
seq2  CCCAGGGAGATAGAAGATGCTCTTGACAG-TGAGCCGGGA-TTCAAC-GA  992

seq1  GGACATCCAAAGTACTCATGATGGGGGTTGACATACTGCCCCCACGGAAG  1046
       ||| |||||| ||||| |||||||||||||| | | |||||| | ||||
seq2  -GACTTCCAAA-TACTC-TGATGGGGGTTGACTTTC-GCCCCCCCTGAAG  1038

seq1  CTGACCC  1053
      |||||||
seq2  CTGACCC  1045

seq1: chr11_113275924_113277079
seq2: B6Ng01-023N17.g_68_1203 (reverse)

seq1  AAGTATAGAGCCTACGACTATAGAGGGGCCGTTGCACAAAGCTGTGGCAT  50
      |||| |||||||||||| |||||| | |||||   ||||||||| |||||
seq2  AAGT-TAGAGCCTACGA-TATAGA-GAGCCGT--GACAAAGCTG-GGCAT  44

seq1  AGAATCCTTAGGCTTAGTTTCTACCAAGTTGGTACACACTAAAGACACCT  100
      ||||||  ||||||||||||||||| |||  |||| | |||||||| |||
seq2  AGAATC--TAGGCTTAGTTTCTACCCAGT--GTACCCCCTAAAGAC-CCT  89

seq1  GGGAGGAGAGGACCCCAACTGAGGAACTGCAGCCATCAGATGGGCCTGTG  150
       ||||||||| ||||  ||||| ||||||||| |||||||| || |||||
seq2  -GGAGGAGAGAACCC--ACTGA-GAACTGCAG-CATCAGAT-GGACTGTG  133

seq1  GCCATG-TTTGTGTGGCATTTTCTTGGTTACTAATTAACGATAAACGAGG  199
      |||||| |||||||||||||||||||| |||||| |||||||||||||| 
seq2  GCCATGTTTTGTGTGGCATTTTCTTGG-TACTAA-TAACGATAAACGAGA  181

seq1  GCAGGTCCACGCCCCTGAGCTGACCCACCTCTGGCCAGGTGGTCCTGGGT  249
      ||||||||||| ||||||||||||||||||||| |||| |||||||||| 
seq2  GCAGGTCCACG-CCCTGAGCTGACCCACCTCTGACCAGATGGTCCTGGG-  229

seq1  TGTATTAGAAAGCAGGCGAAGCAAGCCAGGAGGAGCAAGCCAGGAGGAGC  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTATTAGAAAGCAGACGAAGCAAGCCAGGAGGAGCAAGCCAGGAGGAGC  279

seq1  AAGCCAGCAAGCATCCATTCATGGCTTCTGCTTCAGCTCCTGCCTCCAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCAAGCATCCATTCATGGCTTCTGCTTCAGCTCCTGCCTCCAGG  329

seq1  CTCCTGTCCAGACTTCTGTTGATGATGGACTGTGATGTGGAAGTGGAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTCCAGACTTCTGTTGATGATGGACTGTGATGTGGAAGTGGAAGC  379

seq1  CAGATAAATCCTTTCCTCCCATAAGTTGGATTTGGTTGTGGTGTTTATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATCCTTTCCTCCCATAAGTTGGATTTGGTTGTGGTGTTTATCA  429

seq1  CAGCAACAGGGCTGTAAAGTAAGGCAGCCGCTGTGGGCAAGACTTCTTCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAGGGCTGTAAAGTAAGGCAGCCGCTGTGGGCAAGACTTCTTCA  479

seq1  TTCAACAAAGTCAGTCCTGAGCTTTGAGGGTCTGAGCAGAGGAGCAGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAAAGTCAGTCCTGAGCTTTGAGGGTCTGAGCAGAGGAGCAGCCT  529

seq1  TGCCACCTGGTGACTGGCTCTCTACTGAAGTCAGGCAGCCTTCAACGCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTGGTGACTGGCTCTCTACTGAAGTCAGGCAGCCTTCAACGCCA  579

seq1  AGCAGACACAAACAGACGCTAGCAGTCATGAACCATGCAAGCAGCAAAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACACAAACAGACGCTAGCAGTCATGAACCATGCAAGCAGCAAAGG  629

seq1  CCTGGTGTCTCTTGTGGACACAGAACTCAACAAACAGGGAAGGCACGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTCTCTTGTGGACACAGAACTCAACAAACAGGGAAGGCACGAGA  679

seq1  TGAATTAAAATATACCACGAGGAGCCCATGATGATGGTCTCTGTGGAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAAATATACCACGAGGAGCCCATGATGATGGTCTCTGTGGAGAA  729

seq1  TGGCTAAACCCAGAGAGTCACCAACTCCTTTTGAATTAATAACTTTAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAAACCCAGAGAGTCACCAACTCCTTTTGAATTAATAACTTTAACA  779

seq1  GGTGCCCAAACAGTAGGGTGTTTGTTTGTTTGTTTGTTTGCTTGCTTGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCAAACAGTAGGGTGTTTGTTTGTTTGTTTGTTTGCTTGCTTGTT  829

seq1  TGTATGTTTTTTTGGACCAAAGAGGCCTACAGTTCATTTGGGAAAGAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTTTTTTGGACCAAAGAGGCCTACAGTTCATTTGGGAAAGAAAT  879

seq1  GCACATTGTGACAGGTTCATCACTAAATGTATAGACATAGCAGTTATAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTGTGACAGGTTCATCACTAAATGTATAGACATAGCAGTTATAGC  929

seq1  AGGTTTTTCTTGCTGTGGAAGCATCCTTGACTTTCTTGAGTTCTCTCATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTTCTTGCTGTGGAAGCATCCTTGACTTTCTTGAGTTCTCTCATT  979

seq1  GCCTTGGGAAGCCTGTGGACAAAGGGGCTTTGCACTTGACTGACAGGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGGAAGCCTGTGGACAAAGGGGCTTTGCACTTGACTGACAGGTGG  1029

seq1  GAGGGGTGGTTCCAGAATGCCAGGAGAACACAGCAATTCTGACTCAGCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTGGTTCCAGAATGCCAGGAGAACACAGCAATTCTGACTCAGCAT  1079

seq1  CTTAGGGCTTGGGGTTGCTGGAATGGAAGAGATTCCCTATGGGCTATATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCTTGGGGTTGCTGGAATGGAAGAGATTCCCTATGGGCTATATC  1129

seq1  TGAATTC  1156
      |||||||
seq2  TGAATTC  1136