BAC Information

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BAC

Clone NameB6Ng01-024A08
Chromosome11 (Build37)
Map Location 72,395,819 - 72,555,141
singlet/doubletdoublet
Overlap geneUbe2g1, Ankfy1
Upstream geneWscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577
Downstream geneCyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024A08.bB6Ng01-024A08.g
ACCDH855779DH855780
length7231,026
definitionDH855779|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A08, 5' end.DH855780|Mus musculus domesticus DNA, BAC clone: B6Ng01-024A08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,554,445 - 72,555,141)(72,395,819 - 72,396,859)
sequence
ggggggggatgaaggggtcccggcgtgaattcttcttacacttcatacac
agatgcagagaagaaaatgcctgctcttctaattaacttgtgtttaacgt
cattttcatactaagtatattctctatactataagctgattaatacagct
ctttagtttctcagttttggagctgaagagatgttcagcagtcaggcgta
ctgggttctcacagagttagcacccacacagagttagcacccacacagaa
gctcacaaccacctaaaacccaatttcagatcaaacgacttcctctgacc
tccaagggcaccaggcaagcatgtggcaaagaaacacgcaggtaaacact
catatacgtaaaataatttaaaaatcaaattaaaaacaaacgtttcttgg
ttttgtaaaatgggtatggcagactgtgtctgtaatctcagtacgtggga
agctggggctggagaacatctagttcaagtccagcctgagctacatgtac
ctaaaaagactgtctcaaaaccaaaaataaaagaaaaaaatctgattatt
attttccaactctagtacatactaaaggtataactgtccaaacaaaaact
gtctgaaatgcaagttctctgagggtaaaagaatctggaggtctacagag
tctaagaacagatctactgctttcatttaccaggtatgttttcatcttat
aagacttagactaattgtctggt
gaattccagaagctgaagcctgaacccagcaagctggggcttctgggctt
agtgttcttctgggtgggctttcgctcatcacgctgccgctgttcagcct
ctgtctgaagctcagagagaagccagcagaaggacagggccagcagggac
cagaactgccaaggctggggacatccggagcctggatcaacttagacatg
cctgccttagcctgaggtcaggaaacctaatacaccttctccttgctgcg
gcaggagggtaaaatgcagggtggtgctggctgtttgcaaccaaagaaga
catggacatatggtactattcacattttaaaataagttttaaaaattaca
tttacttatgtatttagattttccgttgttatttatttggtcaagttttc
ttgctttcttttttgtttcttttgagacagggtgggggtggggtctcata
tgtagccttggctggcctggaagctccctatagatcaggctggcctagaa
tacatagagatccacttgcctctgtctcctgagtgagtgctgggattaaa
gacatggaccaccatgcccacactgtttgtttatttatcttggtggggta
acacacatgagctaaggtgcacacgtggaggtcagaggacaacttgtagg
aactgattctctctttccactctgtgggttcaagagatcaaactcgggtt
gtcagacttagtagtaagtacctttactcattgagccatcgtaccagccc
tattcatattttaataagagggtgacagtgcagattatatcaaagagaag
aaaattcataaatccctatcaataacttagcagggctggaagggatggct
caatggttaggagcactttgctcttcctgcacagtgggcggcatacacac
acccgaaactacagctccagggaatccaatgcctctctgactctggggca
cccaaatgctatcatgtgtcacacactcttaaaataatcttaagcaacag
agcagccgcaaccaaaattggcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72554445_72555141
seq2: B6Ng01-024A08.b_25_723 (reverse)

seq1  ACCAGAC-ATTAGTCTAAGTCTTATAAGCTG-AAACATACCTGGTAAATG  48
      ||||||| |||||||||||||||||||| || ||||||||||||||||||
seq2  ACCAGACAATTAGTCTAAGTCTTATAAGATGAAAACATACCTGGTAAATG  50

seq1  AAAGCAGTAGTTCTGTTCTTAGACTCTGTAGACCTCCAGATTCTTTTACC  98
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGTAGATCTGTTCTTAGACTCTGTAGACCTCCAGATTCTTTTACC  100

seq1  CTCAGAGAACTTGCATTTCAGACAGTTTTTGTTTGGACAGTTATACCTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGAACTTGCATTTCAGACAGTTTTTGTTTGGACAGTTATACCTTT  150

seq1  AGTATGTACTAGAGTTGGAAAATAATAATCAGATTTTTTTCTTTTATTTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTACTAGAGTTGGAAAATAATAATCAGATTTTTTTCTTTTATTTT  200

seq1  TGGTTTTGAGACAGTCTTTTTAGGTACATGTAGCTCAGGCTGGACTTGAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGAGACAGTCTTTTTAGGTACATGTAGCTCAGGCTGGACTTGAA  250

seq1  CTAGATGTTCTCCAGCCCCAGCTTCCCACGTACTGAGATTACAGACACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTTCTCCAGCCCCAGCTTCCCACGTACTGAGATTACAGACACAG  300

seq1  TCTGCCATACCCATTTTACAAAACCAAGAAACGTTTGTTTTTAATTTGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCATACCCATTTTACAAAACCAAGAAACGTTTGTTTTTAATTTGAT  350

seq1  TTTTAAATTATTTTACGTATATGAGTGTTTACCTGCGTGTTTCTTTGCCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTATTTTACGTATATGAGTGTTTACCTGCGTGTTTCTTTGCCA  400

seq1  CATGCTTGCCTGGTGCCCTTGGAGGTCAGAGGAAGTCGTTTGATCTGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGCCTGGTGCCCTTGGAGGTCAGAGGAAGTCGTTTGATCTGAAA  450

seq1  TTGGGTTTTAGGTGGTTGTGAGCTTCTGTGTGGGTGCTAACTCTGTGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTTTAGGTGGTTGTGAGCTTCTGTGTGGGTGCTAACTCTGTGTGG  500

seq1  GTGCTAACTCTGTGAGAACCCAGTACGCCTGACTGCTGAACATCTCTTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAACTCTGTGAGAACCCAGTACGCCTGACTGCTGAACATCTCTTCA  550

seq1  GCTCCAAAACTGAGAAACTAAAGAGCTGTATTAATCAGCTTATAGTATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAAACTGAGAAACTAAAGAGCTGTATTAATCAGCTTATAGTATAG  600

seq1  AGAATATACTTAGTATGAAAATGACGTTAAACACAAGTTAATTAGAAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATACTTAGTATGAAAATGACGTTAAACACAAGTTAATTAGAAGAG  650

seq1  CAGGCATTTTCTTCTCTGCATCTGTGTATGAAGTGTATGAAGAATTCAC  697
      ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAGGCATTTTCTTCTCTGCATCTGTGTATGAAGTGTAAGAAGAATTCAC  699

seq1: chr11_72395819_72396859
seq2: B6Ng01-024A08.g_70_1095

seq1  GAATTCCAGAAGCTGAAGCCTGAACCCAGCAAGCTGGGGCTTCTGGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGCTGAAGCCTGAACCCAGCAAGCTGGGGCTTCTGGGCTT  50

seq1  AGTGTTCTTCTGGGTGGGCTTTCGCTCATCACGCTGCCGCTGTTCAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTTCTGGGTGGGCTTTCGCTCATCACGCTGCCGCTGTTCAGCCT  100

seq1  CTGTCTGAAGCTCAGAGAGAAGCCAGCAGAAGGACAGGGCCAGCAGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAAGCTCAGAGAGAAGCCAGCAGAAGGACAGGGCCAGCAGGGAC  150

seq1  CAGAACTGCCAAGGCTGGGGACATCCGGAGCCTGGATCAACTTAGACATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGCCAAGGCTGGGGACATCCGGAGCCTGGATCAACTTAGACATG  200

seq1  CCTGCCTTAGCCTGAGGTCAGGAAACCTAATACACCTTCTCCTTGCTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTAGCCTGAGGTCAGGAAACCTAATACACCTTCTCCTTGCTGCG  250

seq1  GCAGGAGGGTAAAATGCAGGGTGGTGCTGGCTGTTTGCAACCAAAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGGTAAAATGCAGGGTGGTGCTGGCTGTTTGCAACCAAAGAAGA  300

seq1  CATGGACATATGGTACTATTCACATTTTAAAATAAGTTTTAAAAATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACATATGGTACTATTCACATTTTAAAATAAGTTTTAAAAATTACA  350

seq1  TTTACTTATGTATTTAGATTTTCCGTTGTTATTTATTTGGTCAAGTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTATGTATTTAGATTTTCCGTTGTTATTTATTTGGTCAAGTTTTC  400

seq1  TTGCTTTCTTTTTTGTTTCTTTTGAGACAGGGTGGGGGTGGGGTCTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCTTTTTTGTTTCTTTTGAGACAGGGTGGGGGTGGGGTCTCATA  450

seq1  TGTAGCCTTGGCTGGCCTGGAAGCTCCCTATAGATCAGGCTGGCCTAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTGGCTGGCCTGGAAGCTCCCTATAGATCAGGCTGGCCTAGAA  500

seq1  TACATAGAGATCCACTTGCCTCTGTCTCCTGAGTGAGTGCTGGGATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGATCCACTTGCCTCTGTCTCCTGAGTGAGTGCTGGGATTAAA  550

seq1  GACATGGACCACCATGCCCACACTGTTTGTTTATTTATCTTGGTGGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGACCACCATGCCCACACTGTTTGTTTATTTATCTTGGTGGGGTA  600

seq1  ACACACATGAGCTAAGGTGCACACGTGGAGGTCAGAGGACAACTTGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGAGCTAAGGTGCACACGTGGAGGTCAGAGGACAACTTGTAGG  650

seq1  AACTGATTCTCTCTTTCCACTCTGTGGGTTCAAGAGATCAAACTCGGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTCTCTCTTTCCACTCTGTGGGTTCAAGAGATCAAACTCGGGTT  700

seq1  GTCAGACTTAGTAGTAAGTACCTTTACTCATTGAGCCATCGTACCAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACTTAGTAGTAAGTACCTTTACTCATTGAGCCATCGTACCAGCCC  750

seq1  TATTCATATTTTAATAAGAGGGTGACAGTGCAGATTAATATCAAAGAGAA  800
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATTCATATTTTAATAAGAGGGTGACAGTGCAGATT-ATATCAAAGAGAA  799

seq1  GAAAATTCATAAATCCCTATCAATAACTTAGGCAGGGGCTGGAAGGGATG  850
      |||||||||||||||||||||||||||||| ||| |||||||||||||||
seq2  GAAAATTCATAAATCCCTATCAATAACTTA-GCA-GGGCTGGAAGGGATG  847

seq1  GCTCAATGGTTAGGAGCACTTTGCTCTTCCTGCACAGTTGGGCGGCATAC  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCTCAATGGTTAGGAGCACTTTGCTCTTCCTGCACAG-TGGGCGGCATAC  896

seq1  ACACACCCGAAACTACAGCTCCAGGGAATCCAATGCCTTCTTCTGACCTC  950
      ||||||||||||||||||||||||||||||||||||||   ||||| |||
seq2  ACACACCCGAAACTACAGCTCCAGGGAATCCAATGCCT--CTCTGA-CTC  943

seq1  TGGGGCACCCAAATGCTATTCATGTGTACACACACTCTTTAAAATAGATC  1000
      |||||||||||||||||| |||||||| ||||||||| |||||||| |||
seq2  TGGGGCACCCAAATGCTA-TCATGTGT-CACACACTC-TTAAAATA-ATC  989

seq1  TTAAGCAAACAGCAGCAGCAGCAAACCCAAAATGAGCACAG  1041
      |||||| ||||| |||||| ||||  |||||||  ||||||
seq2  TTAAGC-AACAG-AGCAGCCGCAA--CCAAAATTGGCACAG  1026