BAC Information

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BAC

Clone NameB6Ng01-024K09
Chromosome11 (Build37)
Map Location 84,764,726 - 84,921,926
singlet/doubletdoublet
Overlap geneCar4, Usp32, LOC668794
Upstream geneDdx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3
Downstream geneLOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024K09.bB6Ng01-024K09.g
ACCDH856220DH856221
length933934
definitionDH856220|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K09, 5' end.DH856221|Mus musculus domesticus DNA, BAC clone: B6Ng01-024K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,920,994 - 84,921,926)(84,764,726 - 84,765,666)
sequence
gaattccaagccctaaaaattaccttcttagcccccaagtgaatgctttg
ttgagatagggtattgttttatattctggctgacttaaactgtgtagacc
aagctgccctcaaactcacaaagatctacctgcctctgccttctgagagc
tggcattaaaggcatgcaccactatatctgccaaaccaatgaacatttta
tgcactgtctgtctactgattgataaaatgtttgtgtactgtttttagta
aataaaaatataattttcaatattggatatatgtggcagcatttttgtgt
catattttgagtacatacaataatttatttgatctttttgttgatgggac
attgtttattataaacactttaaaaggtttctgtacacattttattctcc
attattagtgaataaatttattattcatcagtttgatgtcgtcagtacac
agtggggattgaaaccagggccttcagaatgttactctattggtaagcta
taatcccatcacaagcatgctgatttttgaatagaaattaatagtttttc
aagtaattttttaaacaaacaatagaagattgcagtattatattctaaaa
taatattctaatttattttgcctccactagatcagaagtaacttcatttg
ttagtaaagccattaacgaattagatatcttgaagaaatatagtagttct
agtagcaaagttttctctctattactataattaatgagatgagctttgtt
ctatgttctgttttcacacctaaaaaacaaaaaacaacatacttgagttg
ttatattgtagatgttagtaaattcgatttctgatgaactacgttttggt
aactatttgaaatatatatacaattttttctttttttttccttttaatca
tggccccacatgttgttgaacttgaaccctccc
gaattcaaacagtacccacgtgagagtcagatctgagggaggtaagtttg
ggtatcagtggggctgccatggtaacccagggcaatgaagctccaaagtc
tattctcatctgtggtccagccccatccttgaacataagacatgttggtt
ttctgcgttgcttgcttgtctttgatttctcttcagctaggagctccagg
agtaaagagtcttagctaccttgtactccctgctgttagtccccccccca
aaagaaaatccaaatctcacactgtggcccatttgagtccctcaacctgt
actcactgatggatttatctagaaagactggcccccaggccccagggtta
ttcctgtctcagcttccccgaggctggaattgcaagcgcatgaagctgca
ctcgtgtttttatgtgaggactagggggtcccaactcaggtcatcagact
tgcgcagcccctctccaactgcatcctctctgaagtccccacgagacttt
acatcttaaagacacagaccaaagcctcacttcattgataaagctcaaaa
tccaagtagaggcacagtaaagaacaaaagtccaaactggaaggtttcgg
gagccaagtagcagaggcactgtcctaggaaaggaaatgggtaaagtctc
ttcccgctaatgtacagtgaagctaagcctagcctcccatgctttcttgt
gtgtttaaaagaaacaaagttttgggggttttttggttttttggtttgtt
tcttttggtttttttgttttttgtttttgtttttttgttttttttaagag
agagataaaggaaacatggagtaggttgggctccgggtgctgagttctta
cctggatcaacatcactgtccagggctggtgagatggctcagtgggtaga
gtacccggctgtcttccggaagtccgaagttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_84920994_84921926
seq2: B6Ng01-024K09.b_36_968 (reverse)

seq1  GGGAGGGTTCCAGGTTCAACAACATGTGGGGCAATGATTAAAAAGGAAAA  50
      ||||||||| || ||||||||||||||||||| |||||| ||||||||||
seq2  GGGAGGGTT-CAAGTTCAACAACATGTGGGGCCATGATT-AAAAGGAAAA  48

seq1  AAAAAAAAAAATATATATATATATTTCAAATAGTTACCAAAACGTAGTTC  100
      ||||| |||||  | |||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAATTGTATATATATTTCAAATAGTTACCAAAACGTAGTTC  98

seq1  ATCAGAAATCGAATTTACTAACATCTACAATATAACAACTC-AGTATGTT  149
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATCAGAAATCGAATTTACTAACATCTACAATATAACAACTCAAGTATGTT  148

seq1  GTTTTT--GTTTTTAGGTGTGAAAACAGAACATAGAACAAAGCTCATCTC  197
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTTAGGTGTGAAAACAGAACATAGAACAAAGCTCATCTC  198

seq1  ATTAATTATAGTAATTAGAGAGAAAACTTTGCTACTAGAACTACTATATT  247
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTAATTATAGTAA-TAGAGAGAAAACTTTGCTACTAGAACTACTATATT  247

seq1  TCTTCAAGATATCTAATTCGTTAATGGCTTTACTAACAAATGAAGTTACT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGATATCTAATTCGTTAATGGCTTTACTAACAAATGAAGTTACT  297

seq1  TCTGATCTAGTGGAGGCAAAATAAATTAGAATATTATTTTAGAATATAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTAGTGGAGGCAAAATAAATTAGAATATTATTTTAGAATATAAT  347

seq1  ACTGCAATCTTCTATTGTTTGTTTAAAAAATTACTTGAAAAACTATTAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAATCTTCTATTGTTTGTTTAAAAAATTACTTGAAAAACTATTAAT  397

seq1  TTCTATTCAAAAATCAGCATGCTTGTGATGGGATTATAGCTTACCAATAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCAAAAATCAGCATGCTTGTGATGGGATTATAGCTTACCAATAG  447

seq1  AGTAACATTCTGAAGGCCCTGGTTTCAATCCCCACTGTGTACTGACGACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACATTCTGAAGGCCCTGGTTTCAATCCCCACTGTGTACTGACGACA  497

seq1  TCAAACTGATGAATAATAAATTTATTCACTAATAATGGAGAATAAAATGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACTGATGAATAATAAATTTATTCACTAATAATGGAGAATAAAATGT  547

seq1  GTACAGAAACCTTTTAAAGTGTTTATAATAAACAATGTCCCATCAACAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAAACCTTTTAAAGTGTTTATAATAAACAATGTCCCATCAACAAA  597

seq1  AAGATCAAATAAATTATTGTATGTACTCAAAATATGACACAAAAATGCTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAAATAAATTATTGTATGTACTCAAAATATGACACAAAAATGCTG  647

seq1  CCACATATATCCAATATTGAAAATTATATTTTTATTTACTAAAAACAGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATATATCCAATATTGAAAATTATATTTTTATTTACTAAAAACAGTA  697

seq1  CACAAACATTTTATCAATCAGTAGACAGACAGTGCATAAAATGTTCATTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACATTTTATCAATCAGTAGACAGACAGTGCATAAAATGTTCATTG  747

seq1  GTTTGGCAGATATAGTGGTGCATGCCTTTAATGCCAGCTCTCAGAAGGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCAGATATAGTGGTGCATGCCTTTAATGCCAGCTCTCAGAAGGCA  797

seq1  GAGGCAGGTAGATCTTTGTGAGTTTGAGGGCAGCTTGGTCTACACAGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTAGATCTTTGTGAGTTTGAGGGCAGCTTGGTCTACACAGTTT  847

seq1  AAGTCAGCCAGAATATAAAACAATACCCTATCTCAACAAAGCATTCACTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGCCAGAATATAAAACAATACCCTATCTCAACAAAGCATTCACTT  897

seq1  GGGGGCTAAGAAGGTAATTTTTAGGGCTTGGAATTC  933
      ||||||||||||||||||||||||||||||||||||
seq2  GGGGGCTAAGAAGGTAATTTTTAGGGCTTGGAATTC  933

seq1: chr11_84764726_84765666
seq2: B6Ng01-024K09.g_67_1000

seq1  GAATTCAAACAGTACCCACGTGAGAGTCAGATCTGAGGGAGGTAAGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACAGTACCCACGTGAGAGTCAGATCTGAGGGAGGTAAGTTTG  50

seq1  GGTATCAGTGGGGCTGCCATGGTAACCCAGGGCAATGAAGCTCCAAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCAGTGGGGCTGCCATGGTAACCCAGGGCAATGAAGCTCCAAAGTC  100

seq1  TATTCTCATCTGTGGTCCAGCCCCATCCTTGAACATAAGACATGTTGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCATCTGTGGTCCAGCCCCATCCTTGAACATAAGACATGTTGGTT  150

seq1  TTCTGCGTTGCTTGCTTGTCTTTGATTTCTCTTCAGCTAGGAGCTCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCGTTGCTTGCTTGTCTTTGATTTCTCTTCAGCTAGGAGCTCCAGG  200

seq1  AGTAAAGAGTCTTAGCTACCTTGTACTCCCTGCTGTTAGTCCCCCCCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGAGTCTTAGCTACCTTGTACTCCCTGCTGTTAGTCCCCCCCCCA  250

seq1  AAAGAAAATCCAAATCTCACACTGTGGCCCATTTGAGTCCCTCAACCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATCCAAATCTCACACTGTGGCCCATTTGAGTCCCTCAACCTGT  300

seq1  ACTCACTGATGGATTTATCTAGAAAGACTGGCCCCCAGGCCCCAGGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGATGGATTTATCTAGAAAGACTGGCCCCCAGGCCCCAGGGTTA  350

seq1  TTCCTGTCTCAGCTTCCCCGAGGCTGGAATTGCAAGCGCATGAAGCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTCTCAGCTTCCCCGAGGCTGGAATTGCAAGCGCATGAAGCTGCA  400

seq1  CTCGTGTTTTTATGTGAGGACTAGGGGGTCCCAACTCAGGTCATCAGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGTTTTTATGTGAGGACTAGGGGGTCCCAACTCAGGTCATCAGACT  450

seq1  TGCGCAGCCCCTCTCCAACTGCATCCTCTCTGAAGTCCCCACGAGACTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCAGCCCCTCTCCAACTGCATCCTCTCTGAAGTCCCCACGAGACTTT  500

seq1  ACATCTTAAAGACACAGACCAAAGCCTCACTTCATTGATAAAGCTCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTAAAGACACAGACCAAAGCCTCACTTCATTGATAAAGCTCAAAA  550

seq1  TCCAAGTAGAGGCACAGTAAAGAACAAAAGTCCAAACTGGAAGGTTTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTAGAGGCACAGTAAAGAACAAAAGTCCAAACTGGAAGGTTTCGG  600

seq1  GAGCCAAGTAGCAGAGGCACTGTCCTAGGAAAGGAAATGGGTAAAGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGTAGCAGAGGCACTGTCCTAGGAAAGGAAATGGGTAAAGTCTC  650

seq1  TTCCCGCTAATGTACAGTGAAGCTAAGCCTAGCCTCCCATGCTTTCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGCTAATGTACAGTGAAGCTAAGCCTAGCCTCCCATGCTTTCTTGT  700

seq1  GTGTTTAAAAGAAACAAAGTTTTGGGGGTTTTTTGGTTTTTTGGTTTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAAAGAAACAAAGTTTTGGGGGTTTTTTGGTTTTTTGGTTTGTT  750

seq1  TCTTTTGGTTTTTTTTGTTTTTTTGTTTTTTGTTTTTTTGTTTTTTTTAA  800
      |||||||| ||||||||||||||   ||||||||||||||||||||||||
seq2  TCTTTTGG-TTTTTTTGTTTTTT--GTTTTTGTTTTTTTGTTTTTTTTAA  797

seq1  GAGAGAGATAAAGGAAACATGGAGTAGGTTGGGCTCCGGGTGCTGAGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGAGAGATAAAGGAAACATGGAGTAGGTTGGGCTCCGGGTGCTGAGTT-  846

seq1  CTTACCTGGATCAAACATCACTGTCCAGGGCTGGTGAGATGGCTCAGTGG  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTTACCTGGATC-AACATCACTGTCCAGGGCTGGTGAGATGGCTCAGTGG  895

seq1  GTAAGAGTACCCGGCTGCTCTTCCGAAGGTCCGAAGTTCAA  941
      || |||||||||||||| ||||||| | |||||||||||||
seq2  GT-AGAGTACCCGGCTG-TCTTCCGGAAGTCCGAAGTTCAA  934