BAC Information

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BAC

Clone NameB6Ng01-024N14
Chromosome11 (Build37)
Map Location 25,725,374 - 25,864,155
singlet/doubletdoublet
Overlap gene5730522E02Rik
Upstream geneLOC100042282
Downstream geneLOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024N14.bB6Ng01-024N14.g
ACCDH856363DH856364
length1,1891,030
definitionDH856363|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N14, 5' end.DH856364|Mus musculus domesticus DNA, BAC clone: B6Ng01-024N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,725,374 - 25,726,582)(25,863,115 - 25,864,155)
sequence
gaattcaccaagccatatattaagtacaagtccagaggctaattacaatt
ctggaactttctcgttttaggctgctatgacacactatgagactcttggc
agaggctctaggtatttctggatatcaactgttctcaatttatctcattt
cttcagtatccaatctcatctgcacagttcatgcaaatcactattctgtt
ggatttctagactcttgggctgtagagaccattagaggcttgtagtctag
accactagctgacacattcttcccttaaggtacctagcagatgtgtgggg
actttcagctagggtaccaagttttcggggaacttgcagagttttaacac
ccacccagcctcactgtacagccttgacttttaaaagactgttccaagtc
tgtcttcttctgttactcacaacagtttagtgcatctgcatcctctgaaa
agatgtttataaaatggcccaaagggtcccaatctactctgaggaggacc
agcagtcacatcagaaagattgcactacctaactgcccatagttcaaacc
agtgttgtttcttactgggctttgggaattacacttgccttttatgagct
gggacactaccatactgcttcatttttgtcatgtacaaaagtcgaagggg
tgctgagaatgcaaatctatatttacctagtttggactcctcttcattat
atttgacccgtgatttcaaccttctggtagctttgggacaggtaagcaaa
tgtttgagttctctaccttatcttgccatgtaacatcagaaaagtaagtc
attcttatctcttagtaaagacaccacttaaaataatggacagaaatata
accactgtcagaaatataagtatagttaattctctgaatgtacattttgc
ctttttaagtaccacatgtcacagaattaatgatttctttttttttctta
ttttctttatttacatttcaaaagttatcccttttctgggttcccctcca
aaaacccctcctccatctcttaaccccctcccactgctcataatcaaccc
actcctgcttctggcctggcattccctatactgggggaattactgatttc
tatgtggtgtctatcatccatcttacaccttctttcaaatgggaaggctt
gcggatgaacatatcctctttgccaatacaatggaaaac
gaattcctaatcaccggaccaaattcaagcaacattcactcattccatat
aaccctggcatttttactactgccatatgatcttagagagttttaattat
catttagagttaatcactagacattttagtgtactagtggtcaaacctat
gaaggctgtgtgcttcctgttgatagaagggccgtttttgtctgtgtttt
tgcctttgttctgaagctatgtgctttccattctatttctatatactctc
aaagccaaagcccgggactttgggaagacaactccaaagatagttggaca
caattcttcccaaaactgggcataatctctgctattaaatgtgttcagtc
tggctagggagttatactcctctggttgtattcttgtatggcttgttctt
agctgaaggagctggcaagtcctattttcggctacactgatgaaactgga
aaactccttgtacatttccttgtacagttcctcttcttttagtgcttgag
cttcagatttttacttatgaatagtaaatgtagtagtagatagggattta
gcagagtggcagagcattttactgagcatgctcaaggccctgtattcagt
tcctagcactgtaaaaataacagcagaggctgggcaatggtgacgcacac
ctttaatcccagcactcaggaggcagaggcaggcagatttctgagttcga
ggacagcctggtctacagagtgagttccagaacagccagggttacacaga
gaaaccctatcttggaaaaaacaaaaacaaaacaacaacaaaaaaaaaac
agaaattaaaagtcatatagaaaaaagtggtaagaagttattatatagtt
attattattaatattatagttatattcaatcatgatgttttgaagttttg
acaataaatgtaaccactggtagttcaatataacatttaatacttcagta
tttctgattattaatgctccatgcattaataatgcttatgtgatgtgaga
gaaactgaggtcccattttaactatgctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_25725374_25726582
seq2: B6Ng01-024N14.b_44_1232

seq1  GAATTCACCAAGCCATATATTAAGTACAAGTCCAGAGGCTAATTACAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAAGCCATATATTAAGTACAAGTCCAGAGGCTAATTACAATT  50

seq1  CTGGAACTTTCTCGTTTTAGGCTGCTATGACACACTATGAGACTCTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTTTCTCGTTTTAGGCTGCTATGACACACTATGAGACTCTTGGC  100

seq1  AGAGGCTCTAGGTATTTCTGGATATCAACTGTTCTCAATTTATCTCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTCTAGGTATTTCTGGATATCAACTGTTCTCAATTTATCTCATTT  150

seq1  CTTCAGTATCCAATCTCATCTGCACAGTTCATGCAAATCACTATTCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTATCCAATCTCATCTGCACAGTTCATGCAAATCACTATTCTGTT  200

seq1  GGATTTCTAGACTCTTGGGCTGTAGAGACCATTAGAGGCTTGTAGTCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTAGACTCTTGGGCTGTAGAGACCATTAGAGGCTTGTAGTCTAG  250

seq1  ACCACTAGCTGACACATTCTTCCCTTAAGGTACCTAGCAGATGTGTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTAGCTGACACATTCTTCCCTTAAGGTACCTAGCAGATGTGTGGGG  300

seq1  ACTTTCAGCTAGGGTACCAAGTTTTCGGGGAACTTGCAGAGTTTTAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGCTAGGGTACCAAGTTTTCGGGGAACTTGCAGAGTTTTAACAC  350

seq1  CCACCCAGCCTCACTGTACAGCCTTGACTTTTAAAAGACTGTTCCAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAGCCTCACTGTACAGCCTTGACTTTTAAAAGACTGTTCCAAGTC  400

seq1  TGTCTTCTTCTGTTACTCACAACAGTTTAGTGCATCTGCATCCTCTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTCTGTTACTCACAACAGTTTAGTGCATCTGCATCCTCTGAAA  450

seq1  AGATGTTTATAAAATGGCCCAAAGGGTCCCAATCTACTCTGAGGAGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTATAAAATGGCCCAAAGGGTCCCAATCTACTCTGAGGAGGACC  500

seq1  AGCAGTCACATCAGAAAGATTGCACTACCTAACTGCCCATAGTTCAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTCACATCAGAAAGATTGCACTACCTAACTGCCCATAGTTCAAACC  550

seq1  AGTGTTGTTTCTTACTGGGCTTTGGGAATTACACTTGCCTTTTATGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTTTCTTACTGGGCTTTGGGAATTACACTTGCCTTTTATGAGCT  600

seq1  GGGACACTACCATACTGCTTCATTTTTGTCATGTACAAAAGTCGAAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACTACCATACTGCTTCATTTTTGTCATGTACAAAAGTCGAAGGGG  650

seq1  TGCTGAGAATGCAAATCTATATTTACCTAGTTTGGACTCCTCTTCATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGAATGCAAATCTATATTTACCTAGTTTGGACTCCTCTTCATTAT  700

seq1  ATTTGACCCGTGATTTCAACCTTCTGGTAGCTTTGGGACAGGTAAGCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACCCGTGATTTCAACCTTCTGGTAGCTTTGGGACAGGTAAGCAAA  750

seq1  TGTTTGAGTTCTCTACCTTATCTTGCCATGTAACATCAGAAAAGTAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAGTTCTCTACCTTATCTTGCCATGTAACATCAGAAAAGTAAGTC  800

seq1  ATTCTTATCTCTTAGTAAAGACACCACTTAAAATAATGGACAGAAATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATCTCTTAGTAAAGACACCACTTAAAATAATGGACAGAAATATA  850

seq1  ACCACTGTCAGAAATATAAGTATAGTTAATTCTCTGAATGTACATTTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTCAGAAATATAAGTATAGTTAATTCTCTGAATGTACATTTTGC  900

seq1  CTTTTTAAGTACCACATGTCACAGAATTAATGATTTCTTTTTTTTTTCTT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTTTTAAGTACCACATGTCACAGAATTAATGATTTC-TTTTTTTTTCTT  949

seq1  ATTTTCTTTATTTACATTTCAAATGTTATCCCTTTTCCTGGTTTCCCCTC  1000
      ||||||||||||||||||||||| |||||||||||| |||| ||||||||
seq2  ATTTTCTTTATTTACATTTCAAAAGTTATCCCTTTT-CTGGGTTCCCCTC  998

seq1  CAAAAACCCCTCCTCCATCTCTT-ACCCCCTCCCACTGCTCATTAATCCA  1049
      ||||||||||||||||||||||| |||||||||||||||||| ||||| |
seq2  CAAAAACCCCTCCTCCATCTCTTAACCCCCTCCCACTGCTCA-TAATCAA  1047

seq1  CCCACTCCTGCTTCCTGGCCCTGGCATTCCCCTATACTGGGGTGAATTAC  1099
      ||||||||||||| |||| ||||||||| ||||||||||||| |||||||
seq2  CCCACTCCTGCTT-CTGG-CCTGGCATT-CCCTATACTGGGG-GAATTAC  1093

seq1  TGATTTCTAATGTGTATGTCTATCATTCACATCTTACCACTTCTTTCAAA  1149
      |||||||| |||||  ||||||||||   ||||||||  |||||||| ||
seq2  TGATTTCT-ATGTG-GTGTCTATCAT--CCATCTTACACCTTCTTTC-AA  1138

seq1  ATGTGAAAGCTTGGCTGATTAGACCTATATCCTCTTTGGCCAATAACAGA  1199
      ||| ||| |||| || |||  || | ||||||||||| ||||||   | |
seq2  ATGGGAAGGCTT-GCGGAT--GAAC-ATATCCTCTTT-GCCAAT---ACA  1180

seq1  ATGGAGAAAC  1209
      ||||| ||||
seq2  ATGGA-AAAC  1189

seq1: chr11_25863115_25864155
seq2: B6Ng01-024N14.g_70_1099 (reverse)

seq1  ACAGCATTAGTTAAAAATGAGGACCTACAGTTTCTTCTCAACATCACATA  50
      |||||| ||||| |||||| |||||| ||||||| |||| ||||||||||
seq2  ACAGCA-TAGTT-AAAATG-GGACCT-CAGTTTC-TCTC-ACATCACATA  44

seq1  AGCATTATTAATGCATGGAGCATTAATATTCAGAAATACTGAAGTATTAA  100
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCATTATTAATGCATGGAGCATTAATAATCAGAAATACTGAAGTATTAA  94

seq1  ATGTTAATTATGAACTACCAGT-GTTACATTTATGTGTCAAAACTTC-AA  148
      ||||| ||  |||||||||||| ||||||||||| |||||||||||| ||
seq2  ATGTT-ATATTGAACTACCAGTGGTTACATTTAT-TGTCAAAACTTCAAA  142

seq1  ACATCATGATTTGAATAATAACTATAATATTAATAATAATAACTATATAA  198
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  ACATCATGA-TTGAAT-ATAACTATAATATTAATAATAATAACTATATAA  190

seq1  TAACTTCTTACCACTTTTTTTCTATATTGACTTTTAATTTCTGTTTTTTT  248
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  TAACTTCTTACCAC-TTTTTTCTATA-TGACTTTTAATTTCTGTTTTTTT  238

seq1  TTTGTTGTTGTTTTGTTTTTTGTTTTTTTCCAAGATAGGGTTTCTCTGTG  298
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  TTTGTTGTTGTTTTGTTTTT--GTTTTTTCCAAGATAGGGTTTCTCTGTG  286

seq1  TAACCCTGGCTGTTCTGGAACTCACTCTGTAGACCAGGCTGTCCTCGAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGGCTGTTCTGGAACTCACTCTGTAGACCAGGCTGTCCTCGAAC  336

seq1  TCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCTGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGTGTGC  386

seq1  GTCACCATTGCCCAGCCTCTGCTGTTATTTTTACAGTGCTAGGAACTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATTGCCCAGCCTCTGCTGTTATTTTTACAGTGCTAGGAACTGAA  436

seq1  TACAGGGCCTTGAGCATGCTCAGT-AAATGCTCTGCCACTCTGCTAAATC  497
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TACAGGGCCTTGAGCATGCTCAGTAAAATGCTCTGCCACTCTGCTAAATC  486

seq1  CCTATCTACTACTACATTTACTATTCATAAGTAAAAATCTGAAGCTCAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTACTACTACATTTACTATTCATAAGTAAAAATCTGAAGCTCAAG  536

seq1  CACTAAAAGAAGAGGAACTGTACAAGGAAATGTACAAGGAGTTTTCCAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAAAGAAGAGGAACTGTACAAGGAAATGTACAAGGAGTTTTCCAGT  586

seq1  TTCATCAGTGTAGCCGAAAATAGGACTTGCCAGCTCCTTCAGCTAAGAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGTGTAGCCGAAAATAGGACTTGCCAGCTCCTTCAGCTAAGAAC  636

seq1  AAGCCATACAAGAATACAACCAGAGGAGTATAACTCCCTAGCCAGACTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATACAAGAATACAACCAGAGGAGTATAACTCCCTAGCCAGACTGA  686

seq1  ACACATTTAATAGCAGAGATTATGCCCAGTTTTGGGAAGAATTGTGTCCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTAATAGCAGAGATTATGCCCAGTTTTGGGAAGAATTGTGTCCA  736

seq1  ACTATCTTTGGAGTTGTCTTCCCAAAGTCCCGGGCTTTGGCTTTGAGAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTTGGAGTTGTCTTCCCAAAGTCCCGGGCTTTGGCTTTGAGAGT  786

seq1  ATATAGAAATAGAATGGAAAGCACATAGCTTCAGAACAAAGGCAAAAACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAATAGAATGGAAAGCACATAGCTTCAGAACAAAGGCAAAAACA  836

seq1  CAGACAAAAACGGCCCTTCTATCAACAGGAAGCACACAGCCTTCATAGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAAAAACGGCCCTTCTATCAACAGGAAGCACACAGCCTTCATAGGT  886

seq1  TTGACCACTAGTACACTAAAATGTCTAGTGATTAACTCTAAATGATAATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCACTAGTACACTAAAATGTCTAGTGATTAACTCTAAATGATAATT  936

seq1  AAAACTCTCTAAGATCATATGGCAGTAGTAAAAATGCCAGGGTTATATGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTCTAAGATCATATGGCAGTAGTAAAAATGCCAGGGTTATATGG  986

seq1  AATGAGTGAATGTTGCTTGAATTTGGTCCGGTGATTAGGAATTC  1041
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTGAATGTTGCTTGAATTTGGTCCGGTGATTAGGAATTC  1030