BAC Information

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BAC

Clone NameB6Ng01-025F02
Chromosome12 (Build37)11 (Build37)
Map Location 57,410,783 - 57,410,90847,637,718 - 47,638,119
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1110008L16Rik, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601
Downstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025F02.bB6Ng01-025F02.g
ACCDH856705DH856706
length438396
definitionDH856705|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F02, 5' end.DH856706|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,410,783 - 57,410,908)(47,637,718 - 47,638,119)
sequence
ctatatgatcaaaggtctggcaattgtaggactcttatatgatctaagtt
cttatagtaatgagagctttccccagtattctaaaggacagaaactaatg
tcatcaaccaattgttgatactcacagccatctattggacagagtacagg
atccccagtgaaaatacccaaggagctgaaggggtttgcagccccatagg
cggtacagcaatatgaactaaatagtatctccagagctctctgggactaa
atcaccaaccaaagaaaacacatggtgggactcatggctctagctgcata
tgtagcagaggatggcctagtccatcatcaatgggaggagaggaccctgg
tcctgtgaaggttatgtgccccagtacaggggactgactgctagggccag
gaaatgggagtgagtgggttggtgagcagggggagggg
cctttacaggtgtgtttggactgcaatgtggattagagagagcactgtgg
tggaagccaaggaatataaattagcgtccatgtcagcagacatcaatgag
ggaggtaaatactgaagaaatgccttgagcctccatttccctttttgtca
aataagtggtttgctggtaagcccttttcacctagctttgtttttttctt
tcttatatatttatgcatgtgtatgttcatgtacgtttgtatgtatgtgt
gtgtgcatgtgcatttgtacttgtgtatgcatgtgcatttgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcatgccacagaacat
gtttattgataataggttaactttttggagccagttcgctcctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57410783_57410908
seq2: B6Ng01-025F02.b_375_488 (reverse)

seq1  CCCCTTCCCCTGCTCACCAGCCCACCCACTCATGCTTCTTGGCCCT----  46
      ||||| ||||||||||||| ||||| |||||    ||| |||||||    
seq2  CCCCTCCCCCTGCTCACCAACCCACTCACTCCCATTTCCTGGCCCTAGCA  50

seq1  GGCATTCCCCAATACTGGGGCATAGAACCTTTACAGGACCAAGGGTCTCT  96
      | || |||||  |||||||||| | |||||| |||||||| ||||||   
seq2  GTCAGTCCCCTGTACTGGGGCACATAACCTTCACAGGACC-AGGGTC---  96

seq1  CCTCTCATTGATCTCTCCTCCCATTGATGA  126
                  ||||||||||||||||||
seq2  ------------CTCTCCTCCCATTGATGA  114

seq1: chr11_47637718_47638119
seq2: B6Ng01-025F02.g_64_465

seq1  GAATTCCCTTTACAGGTGTGTTTGGACTGCAATGTGGATTAGAGAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTACAGGTGTGTTTGGACTGCAATGTGGATTAGAGAGAGCA  50

seq1  CTGTGGTGGAAGCCAAGGAATATAAATTAGCGTCCATGTCAGCAGACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGTGGAAGCCAAGGAATATAAATTAGCGTCCATGTCAGCAGACATC  100

seq1  AATGAGGGAGGTAAATACTGAAGAAATGCCTTGAGCCTCCATTTCCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGGAGGTAAATACTGAAGAAATGCCTTGAGCCTCCATTTCCCTTT  150

seq1  TTGTCAAATAAGTGGTTTGCTGGTAAGCCCTTTTCACCTAGCTTTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAATAAGTGGTTTGCTGGTAAGCCCTTTTCACCTAGCTTTGTTTT  200

seq1  TTTCTTTCTTATATATTTATGCATGTGTATGTTCATGTACGTTTGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTATATATTTATGCATGTGTATGTTCATGTACGTTTGTATGT  250

seq1  ATGTGTGTGTGCATGTGCATTTGTACTTGTGTATGCATGTGCATTTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGCATGTGCATTTGTACTTGTGTATGCATGTGCATTTGTGT  300

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTACATGCATGCCACA  350
      ||||||||||||||||||||||||||||||||  || | |||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCATGCCACA  350

seq1  GAACATGTAGAGTGATCAAAGGTCAACTTTTTGGAGCCAGTTCTCTCCTT  400
      ||||||||  | |||| | |||| ||||||||||||||||||| ||||||
seq2  GAACATGTTTATTGATAATAGGTTAACTTTTTGGAGCCAGTTCGCTCCTT  400

seq1  TC  402
      ||
seq2  TC  402