BAC Information

Click to search

BAC

Clone NameB6Ng01-025F05
Chromosome11 (Build37)
Map Location 89,705,017 - 89,876,275
singlet/doubletdoublet
Overlap genePctp
Upstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream geneTmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025F05.bB6Ng01-025F05.g
ACCDH856711DH856712
length827603
definitionDH856711|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F05, 5' end.DH856712|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,705,017 - 89,705,847)(89,875,672 - 89,876,275)
sequence
gaattcatctgcttaatacaattttgaaacgaaaaaaatctcctttagag
aaatatattagacttaagcttttcaggaacaaaagtggggaaagacctgt
ttcctccagggttctggggaaagggtgggcttttagtagggagggtttta
gctattggtttccttctatagttcagactttatgtaagttctcaatccta
tccatgcaggggctgagtgttagtttcacttgattatggaattcctgtcc
ccatctgctgccattcacaggggtggcctctggttgatgaactaaggcca
caacacggctgatgtaaccatgattgtcaatgttcatctctttggtatca
cccagcctgttcgctgctgggtctgcacagaataccctcctctgcttcct
gcagtcctttatcctatgctctgtgtcacatctgggtcttgggaagtttt
ccagttgcatctaaaccgtactgaacatcaaggaaacccgaaggtctctc
agcctacatgcatctcattctcttaaaaaaaatcagtcagggtccaatgc
agggaccctctctcgaatgtcacacactcactcgagaccactctctgcca
ctcgtgtctgtggactgataagtctggcatagacctcattttcatcccag
gcacaagcagagcccttgaactggccacttcttcccacaatgctctacat
agcttatgaggactcttctagtctaatatatatttaccatgatttctaca
cctcttatatggatctgttctcaacaagcacaagtcctttgtttctcttg
ctattgatgtttagaactcaaaagcca
gaattcattcttacattaaggtgtcgacttttttattattattaacataa
aatcatctgaaggaaaaaaagtacaatctgccagactagggaggccatta
ttcagttcgaaaatttgtactttatttgctgtgttaactcatgactgacc
acagaagcccttgtagatacaatctaattagaagaccctggattgtttgt
gggtgacctaagaataacggactgagctctaaaggggattagcagacttc
gccttgctatgcggtcacctctcaaaacctcaacggaatcttgtgcaacc
taaaggctctaatgtcactgatttcagactggcctcatgggaatcaaacg
caaacacttcctaaaacttccggatcataaagagtgactcgggatgcctg
aactggggttgactggtttatggaacttactatctttgctttggatatca
ggcaccatcgctggccctcttttttgaaatgtgtgatgcatgcacatatt
ttttatgcgtggaggctcgagtgtgtggatccatagaactctttcaggaa
tcatcctcgagatgactgtctctctggtctatgatttgattctctcattg
gcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_89705017_89705847
seq2: B6Ng01-025F05.b_39_866

seq1  GGAATTCATCTGCTTAATACAATTTTGAAA-GAAAAAAATCTCCTTTAGA  49
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAATTCATCTGCTTAATACAATTTTGAAACGAAAAAAATCTCCTTTAGA  50

seq1  GAAATATATTAGACTTAAGCTTTTCAGGAACAAAAGTGGGGAAAGACCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATTAGACTTAAGCTTTTCAGGAACAAAAGTGGGGAAAGACCTG  100

seq1  TTTCCTCCAGGGTTCTGGGGAAAGGGTGGGCTTTTAGTAGGGAGGGTTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCAGGGTTCTGGGGAAAGGGTGGGCTTTTAGTAGGGAGGGTTTT  150

seq1  AGCTATTGGTTTCCTTCTATAGTTCAGACTTTATGTAAGTTCTCAATCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTGGTTTCCTTCTATAGTTCAGACTTTATGTAAGTTCTCAATCCT  200

seq1  ATCCATGCAGGGGCTGAGTGTTAGTTTCACTTGATTATGGAATTCCTGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGCAGGGGCTGAGTGTTAGTTTCACTTGATTATGGAATTCCTGTC  250

seq1  CCCATCTGCTGCCATTCACAGGGGTGGCCTCTGGTTGATGAACTAAGGCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGCTGCCATTCACAGGGGTGGCCTCTGGTTGATGAACTAAGGCC  300

seq1  ACAACACGGCTGATGTAACCATGATTGTCAATGTTCATCTCTTTGGTATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACGGCTGATGTAACCATGATTGTCAATGTTCATCTCTTTGGTATC  350

seq1  ACCCAGCCTGTTCGCTGCTGGGTCTGCACAGAATACCCTCCTCTGCTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCTGTTCGCTGCTGGGTCTGCACAGAATACCCTCCTCTGCTTCC  400

seq1  TGCAGTCCTTTATCCTATGCTCTGTGTCACATCTGGGTCTTGGGAAGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCTTTATCCTATGCTCTGTGTCACATCTGGGTCTTGGGAAGTTT  450

seq1  TCCAGTTGCATCTAAACCGTACTGAACATCAAGGAAACCCGAAGGTCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGCATCTAAACCGTACTGAACATCAAGGAAACCCGAAGGTCTCT  500

seq1  CAGCCTACATGCATCTCATTCTCTTAAAAAAAATCAGTCAGGGTCCAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTACATGCATCTCATTCTCTTAAAAAAAATCAGTCAGGGTCCAATG  550

seq1  CAGGGACCCTCTCTCGAATGTCACACACTCACTCGAGACCACTCTCTGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACCCTCTCTCGAATGTCACACACTCACTCGAGACCACTCTCTGCC  600

seq1  ACTCGTGTCTGTGGACTGATAAGTCTGGCATAGACCTCA-TTTCATCCCA  648
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTCGTGTCTGTGGACTGATAAGTCTGGCATAGACCTCATTTTCATCCCA  650

seq1  GGCACAAGCAGAGCCCTTGAACTGGCCACTTCTTCCCACAATGCTCGACA  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGCACAAGCAGAGCCCTTGAACTGGCCACTTCTTCCCACAATGCTCTACA  700

seq1  TAGCTTATGAGGACTCTTCTAGTCCAAGAAATAGAAAACCATGATTTCTA  748
      |||||||||||||||||||||||| || | |||    |||||||||||||
seq2  TAGCTTATGAGGACTCTTCTAGTCTAATATATA-TTTACCATGATTTCTA  749

seq1  CACCTCTTATATGGAATCTGTTCTCAACAAGCACAAGTCCTTTTGTTTCT  798
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  CACCTCTTATATGG-ATCTGTTCTCAACAAGCACAAGTCC-TTTGTTTCT  797

seq1  CTTGCTATTGATGTTTTAGAAACTCAAAAGCCA  831
      ||||||||||||| ||||| |||||||||||||
seq2  CTTGCTATTGATG-TTTAG-AACTCAAAAGCCA  828

seq1: chr11_89875672_89876275
seq2: B6Ng01-025F05.g_67_669 (reverse)

seq1  GGCCAATGAGAGACTC-CTTCCTAGACCAGGGAGACAGTGATCCTGAGGG  49
      ||||||||||||| ||   || |||||||| |||||||| |||  |||| 
seq2  GGCCAATGAGAGAATCAAATCATAGACCAGAGAGACAGTCATCTCGAGGA  50

seq1  TGATTCCTGAAATTGTCCTCTGGCTCTTACACACATGAGCATCCACGCAT  99
      ||||||||||||  || || ||| ||  ||||||  |||| |||||||||
seq2  TGATTCCTGAAAGAGTTCTATGGATC-CACACACTCGAGCCTCCACGCAT  99

seq1  ACAAAATATGTGCATGCATCACACATTTCAAAAAAGAGGGCCAGCCTGAT  149
      | |||||||||||||||||||||||||||||||||||||||||||  |||
seq2  AAAAAATATGTGCATGCATCACACATTTCAAAAAAGAGGGCCAGC--GAT  147

seq1  -GTGCCTGATCTCCAAAGCATATATAGTAAGTTCCATAAACCAGTCAACC  198
       ||||||||| ||||||||| | |||||||||||||||||||||||||||
seq2  GGTGCCTGATATCCAAAGCAAAGATAGTAAGTTCCATAAACCAGTCAACC  197

seq1  ACAGTTCAACCATACCAAGTTACTCTTTATGAACCAGAAGTTATAGGAAG  248
       |||||||  ||| || ||| ||||||||||| || |||||| |||||||
seq2  CCAGTTCAGGCATCCCGAGTCACTCTTTATGATCCGGAAGTTTTAGGAAG  247

seq1  TGTTTGTGTTTAATTCCCATGAGGCCAGTCTGAAATCAGTGCCATTAGAG  298
      |||||| |||| ||||||||||||||||||||||||||||| ||||||||
seq2  TGTTTGCGTTTGATTCCCATGAGGCCAGTCTGAAATCAGTGACATTAGAG  297

seq1  CCTTTGGGTTCTACAAGAATCCATTGAGGTTTTGAGAGGTGACCACATAG  348
      ||||| ||||  |||||| ||| ||||||||||||||||||||| |||||
seq2  CCTTTAGGTTGCACAAGATTCCGTTGAGGTTTTGAGAGGTGACCGCATAG  347

seq1  CAAGGCGAAGTCTGCTAATCCACTTTAGAGCTCACTCCCTTATTCCTAGG  398
      ||||||||||||||||||||| |||||||||||| ||| |||||| ||||
seq2  CAAGGCGAAGTCTGCTAATCCCCTTTAGAGCTCAGTCCGTTATTCTTAGG  397

seq1  TCACCCACAAACAATCCAGGGTCTTCTAATTAGATTGTATCTACAAGGGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCACAAACAATCCAGGGTCTTCTAATTAGATTGTATCTACAAGGGC  447

seq1  TTCTGTGCTCAGTCATGAGTTACCACAGCAATTAAAGTACAAACTTTCAA  498
      ||||||| |||||||||||||| |||||||| ||||||||||| |||| |
seq2  TTCTGTGGTCAGTCATGAGTTAACACAGCAAATAAAGTACAAATTTTCGA  497

seq1  ACTGAATAATGGCCTCCCTATTCTGGCAGATTCTATTTTTATTCCTTCAG  548
      |||||||||||||||||||| ||||||||||| || |||| |||||||||
seq2  ACTGAATAATGGCCTCCCTAGTCTGGCAGATTGTACTTTTTTTCCTTCAG  547

seq1  ATGCTTTTATGTTAATAATAATAAAAAAGTAGACACCTTAATAGAAGAAT  598
      ||| |||||||||||||||||||||||||| |||||||||||  ||||||
seq2  ATGATTTTATGTTAATAATAATAAAAAAGTCGACACCTTAATGTAAGAAT  597

seq1  GAATTC  604
      ||||||
seq2  GAATTC  603