BAC Information

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BAC

Clone NameB6Ng01-025H07
Chromosome11 (Build37)
Map Location 93,877,167 - 94,030,448
singlet/doubletdoublet
Overlap geneSpag9, LOC100039431, LOC100039440
Upstream geneLOC100039286, Car10, LOC629636, Utp18, Mbtd1, Nme2, Nme1
Downstream geneTob1, Wfikkn2, 3300001P08Rik, Ankrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025H07.bB6Ng01-025H07.g
ACCDH856802DH856803
length1,100985
definitionDH856802|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H07, 5' end.DH856803|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,877,167 - 93,878,290)(94,029,456 - 94,030,448)
sequence
gaattccaggctgttttgcagatagggattttcagtatatgtttggttac
tgaagctaatgaaccttcaatgagctatatcccatgactttgtttttatg
cttgatgatacataagagttatgcaggttctttttgctaattaaaaaatg
ggtggtttctctaatttttgctgtagactgtcctataaaagcctgagcac
ttggagagcttgtgagggagatgcttgaaacttgagcatctaataatcaa
gtgagaaaatttagcctttttttgacacattcttactttgtagcccacct
ttctggaactcatgtggttcatgctggccttgaactcacagcagcccttt
cagcctcccaagtgctgagaatacagatgtaaactatgctcaagaaaatg
tggttattgaagataatattttaattctaaattgataatacttttgtatc
aaggattatatagtgtcttaatttgggttttattgctttgaagatacacc
atgactgaggcaactcttacaatcttacaaggacactggcttacagttcc
agagattcggaccattatcatcatggcaggaagtgtggccacgtcctggc
gtatatggtgctggagaaggagctgacagttctgcatctggatcccgctg
cagccaggagatactgtgtcatcagtgctgggcacagctataacactggg
agacctccgagcccgcctaccacagtgactcacttcctcggctaagacac
acctaacagtgccacttctcatgggccaagcatattcaaaccaccgcaca
cataaacaaagacatatcataaacaaacaaatgttcattattttgctgag
tagttgctggtgcacacgttatatcctagcactcaggagtcagaggcagc
ctagtctcagagaaatcgccggggctgttacacacacaaattctgtctca
aaaatcaaaagcagcacagcatttttaaaaattttatgaccctttttctt
ttacaaagtactgtttcagtaaatttcttttgacttgaaagaattgccta
ctaaatcttttagacttaagtgtctgtttcgtttgcagaaactggagcaa

gaattccacttatcttgagactggccaggctgcctgaaggttcccggact
tctgaccagcaactttggatatgcaaatggtgaaagatagatcaggtgtc
aatctttgaaaaataaaacgaagcctgccactgtgtgattacatgactat
ctgtgtccctctgcgtgatgtgtttgagacccccgggcgcacacacgctc
acattctgccacatctgctagtcaggatacctgttgtggctgaatggttt
ttgtttgcttgcctgttttgttatggcttttttttttttttctggggatt
tcactgtgggtccctgcatgtagacacgggggggcttgaacggaaaaaga
tttgcctgcctctgcctcccaaatgctgggattggagtgtgagccaccat
ccccttctgttgtgttatttgtatttttgtccccaatagactgatccctc
cccagttgtttctatgtggagtctattctcctgagagggaggaacagttt
ctacatgcctcatgccctgaacaaaacagtatttttttctcctgattata
tgtgtgcccccccccccccatttgcctgcagtgggaaaagtggccggctg
acaactcccaggtgttcagggagacaacagaaggacatttccaataggaa
agtgtcttgtcttgccagctcggaggaagaaaataatttggctggaacgg
ccatagcctgtccatggttcatggcagaaagaaggcacacgattgggcca
ccagggtggggcatctcccatgatgtcaatgcagagtcacttgtccccag
agactcaggccttccttgagccatcggtctcttcagggcctctcatgtat
tcctccctgggagacaactctgcacctggggcaggatcacccctcaggac
caagtggttgtgcaggcccagaggaagccagatcaacattcattttgatg
agagtgtggctcaacaaaactcctttagatcccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_93877167_93878290
seq2: B6Ng01-025H07.b_43_1142

seq1  GAATTCACAGGCTGTTTAGCAGATAGGGATTTTCAGTAGATTTTTGGTTA  50
      |||||| |||||||||| |||||||||||||||||||| || ||||||||
seq2  GAATTC-CAGGCTGTTTTGCAGATAGGGATTTTCAGTATATGTTTGGTTA  49

seq1  CAGAAGCTAATGAGCAAAACAATGAGCTATATCCCATGACTTTGTTTTTA  100
      | ||||||||||| |    |||||||||||||||||||||||||||||||
seq2  CTGAAGCTAATGAAC-CTTCAATGAGCTATATCCCATGACTTTGTTTTTA  98

seq1  TGCTTGATGATACATAAGAGTTATGCAGCTTCTTTTTGCTAATTAAGAAG  150
      |||||||||||||||||||||||||||| ||||||||||||||||| || 
seq2  TGCTTGATGATACATAAGAGTTATGCAGGTTCTTTTTGCTAATTAAAAAA  148

seq1  TGGGTGGTTTCTCTAATTTTTGCTGTAGACTGTCCTATAAAAGCCTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTTTCTCTAATTTTTGCTGTAGACTGTCCTATAAAAGCCTGAGC  198

seq1  ACTTAGAGAGCTTGTGAGGGAGATGCTTGTAAGTTGAGCATCTTATAATC  250
      |||| |||||||||||||||||||||||| || |||||||||| ||||||
seq2  ACTTGGAGAGCTTGTGAGGGAGATGCTTGAAACTTGAGCATCTAATAATC  248

seq1  AAGTAAGAAAATTTAGCCTTTTTTTGAGACATTCTTACTTTGTAGCCCAG  300
      |||| |||||||||||||||||||||| ||||||||||||||||||||| 
seq2  AAGTGAGAAAATTTAGCCTTTTTTTGACACATTCTTACTTTGTAGCCCAC  298

seq1  GTTTCTGGAACTCATGTAGTTCATGCTGGCCTTGAACTCACAGCAGCCCT  350
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTTCTGGAACTCATGTGGTTCATGCTGGCCTTGAACTCACAGCAGCCCT  348

seq1  TTCAGCCTCCCAAGTGCTGAGAATACAGATGTAAACTATGCTCAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTCCCAAGTGCTGAGAATACAGATGTAAACTATGCTCAAGAAAA  398

seq1  TGTGGTTATTGAAGATAATATTTTAATTCTAAATTGATAATACTTTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTATTGAAGATAATATTTTAATTCTAAATTGATAATACTTTTGTA  448

seq1  TCAAGGATTATATAGTGTCTTAGTTTGGGTTTTATTGCTTTGAAGATACA  500
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAAGGATTATATAGTGTCTTAATTTGGGTTTTATTGCTTTGAAGATACA  498

seq1  CCATGACTAAGGCAACTCTTACAATCTTACAAGGACACTGGCTTACAGTT  550
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTGAGGCAACTCTTACAATCTTACAAGGACACTGGCTTACAGTT  548

seq1  CCAGAGATTCAGTCCATTATCATCATGGCAGGAAGTGTGGCGACGTCCTG  600
      |||||||||| | |||||||||||||||||||||||||||| ||||||||
seq2  CCAGAGATTCGGACCATTATCATCATGGCAGGAAGTGTGGCCACGTCCTG  598

seq1  GCGTATATGGTGCTGGAGAAGGAGCTGACAGTTCTGCATCTGGATCCCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATATGGTGCTGGAGAAGGAGCTGACAGTTCTGCATCTGGATCCCGC  648

seq1  TGCAGCCAGGAGAGACTGTCTCTTCTGTGCTGGGCAGAGCTTTAGCACTA  700
      ||||||||||||| ||||| || || |||||||||| |||| || |||| 
seq2  TGCAGCCAGGAGATACTGTGTCATCAGTGCTGGGCACAGCTATAACACTG  698

seq1  GGAGCCCTCCGAGCCCGCCTACAACAGTGACACACTTCCTCCAACAAGGA  750
      |||| ||||||||||||||||| |||||||| |||||||| |  | | ||
seq2  GGAGACCTCCGAGCCCGCCTACCACAGTGACTCACTTCCT-CGGCTAAGA  747

seq1  CACACCTAACAGTGCCACTTCTCATGGGCCAAGCATATTCAAACCACCAC  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CACACCTAACAGTGCCACTTCTCATGGGCCAAGCATATTCAAACCACCGC  797

seq1  ACACATAAAGAAAGACATATCAGAAACAAACAAATGTTCATTATTTTGCT  850
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  ACACATAAACAAAGACATATCATAAACAAACAAATGTTCATTATTTTGCT  847

seq1  GAGTAG-TGCTGGTGCACACTTTTAATCCTAGCACTCAGGAGTCAGAGGC  899
      |||||| ||||||||||||| ||  |||||||||||||||||||||||| 
seq2  GAGTAGTTGCTGGTGCACACGTTATATCCTAGCACTCAGGAGTCAGAGG-  896

seq1  CAGCCTAGTCTACAGAGCAAGTGCCAGGGCTGTTACACAGAAAAATTCTG  949
      ||||||||||| ||||| ||  ||| ||||||||||||| | ||||||||
seq2  CAGCCTAGTCT-CAGAGAAATCGCCGGGGCTGTTACACACACAAATTCTG  945

seq1  TCTCAAAAAATCAAAAAGCAACAACAACATTTTTTAAAAAAATTTTAATG  999
      |||| ||||||| ||||||| | ||| |||||||   ||||||||| |||
seq2  TCTC-AAAAATC-AAAAGCAGC-ACAGCATTTTT---AAAAATTTT-ATG  988

seq1  ACCCTTTTTCCTTTACAAAGTACTGTTTTCAGTAAAATTTTCTTTTTGAC  1049
      |||||||||| |||||||||||||| ||||||||||  |||| |||||||
seq2  ACCCTTTTTCTTTTACAAAGTACTG-TTTCAGTAAA--TTTC-TTTTGAC  1034

seq1  TTGAAAAAGAATTGCTTATCTAAAAATCTTTTTAGACATAAAGTGGTCTG  1099
      |||  |||||||||| || ||  ||||| |||||||| | |||| |||||
seq2  TTG--AAAGAATTGCCTA-CT--AAATC-TTTTAGAC-TTAAGT-GTCTG  1076

seq1  TTTCTGTTGTAAGAAACTTGAGCAA  1124
      |||| |||   ||||||| ||||||
seq2  TTTC-GTTTGCAGAAACTGGAGCAA  1100

seq1: chr11_94029456_94030448
seq2: B6Ng01-025H07.g_67_1051 (reverse)

seq1  TAGGGATCTGAGAGGAGTGTCTGTTGAGCCACACCTCCTCATTCAAAATT  50
      ||||||||| | |||||| | |||||||||||||   |||| |||||| |
seq2  TAGGGATCT-AAAGGAGT-TTTGTTGAGCCACAC--TCTCA-TCAAAA-T  44

seq1  GAATGTTGAATCTGGGCTTCCTCCTGGGCCTGCACAA-CACTTGGTCTTG  99
      |||||||| |||| |||||||| |||||||||||||| ||||||||| ||
seq2  GAATGTTG-ATCT-GGCTTCCT-CTGGGCCTGCACAACCACTTGGTCCTG  91

seq1  AGGGGTTGATCCTG-CCCAGGTGCAG-GGTGTCTCCCAGGGAAGGAATAC  147
      ||||| |||||||| ||||||||||| | |||||||||||| ||||||||
seq2  AGGGG-TGATCCTGCCCCAGGTGCAGAGTTGTCTCCCAGGG-AGGAATAC  139

seq1  ATGAAGGCCCCTGAAGAGACCGATGGCTCTAGGAAGGCCTGAGTCTCTGG  197
      ||||  | ||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGAGAGGCCCTGAAGAGACCGATGGCTCAAGGAAGGCCTGAGTCTCTGG  189

seq1  GGAC-AGTGACTCTGCATTGACATCATGGGAGATG-CCCACCCTGGTGGA  245
      |||| |||||||||||||||||||||||||||||| ||||||||||||| 
seq2  GGACAAGTGACTCTGCATTGACATCATGGGAGATGCCCCACCCTGGTGGC  239

seq1  CCAATCGTGTGCCTTCTTTCTGCCTTGCACCATTGCCCAGGCTCT-GCCG  294
      |||||||||||||||||||||||| || |||| ||  |||||| | ||||
seq2  CCAATCGTGTGCCTTCTTTCTGCCATGAACCA-TGGACAGGCTATGGCCG  288

seq1  TTCCAGCC-AATTATTTTCTTCCTCCGAGCTGGCAAGACATGACACTTTC  343
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  TTCCAGCCAAATTATTTTCTTCCTCCGAGCTGGCAAGACAAGACACTTTC  338

seq1  CTATTGGAAATGTCCTTCTGTTGTCTCCCTGAACAGCTGGGAGTTGTCAG  393
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTATTGGAAATGTCCTTCTGTTGTCTCCCTGAACACCTGGGAGTTGTCAG  388

seq1  CCGGCCACTTTTCCCACTGCAGGCAAATGGGGGGGGGGGGGCACACATAT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCACTTTTCCCACTGCAGGCAAATGGGGGGGGGGGGGCACACATAT  438

seq1  AATCAGGAGAAAAAAATACTGTGCTGTTCAGTGCATGAGGCATGTAGAAA  493
      ||||||||||||||||||||||  ||||||| ||||||||||||||||||
seq2  AATCAGGAGAAAAAAATACTGTTTTGTTCAGGGCATGAGGCATGTAGAAA  488

seq1  CTGTTCCTCCCTCTCAGGAGAATAGACTCCACATAGAAACAACTGGGGAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTCCCTCTCAGGAGAATAGACTCCACATAGAAACAACTGGGGAG  538

seq1  GGATCAGTCTATTGGGGACAAAAATACAAATAACACAACAGAGCTGGATG  593
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  GGATCAGTCTATTGGGGACAAAAATACAAATAACACAACAGAAGGGGATG  588

seq1  GTGGCACACACTTTTAATCCCAGCATTTGGGAGGCAGAGGCAGGCAAATC  643
      ||||| ||||| |  |||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAC-TCCAATCCCAGCATTTGGGAGGCAGAGGCAGGCAAATC  637

seq1  TTTGTTAGTTCAAGCCCAGCCTGGTCTACAGCCAGGGCTGCACAGTGAAA  693
      ||| |  ||||||||||  ||  |||||||  |||||   ||||||||||
seq2  TTTTTCCGTTCAAGCCCCCCCGTGTCTACATGCAGGGACCCACAGTGAAA  687

seq1  CTCTGTGAAAAAAAAAAAAAAGGCAGAACAAAACAAACAAACAAATAAAA  743
        |   |||||||||||||||| || |||||||||  ||| |||| ||||
seq2  TCCCCAGAAAAAAAAAAAAAAGCCATAACAAAACAGGCAAGCAAACAAAA  737

seq1  ACCACTAAGCCACAACAGGTATCCTCACTAGCAGATGTTTATGAATGTGT  793
      |||| | |||||||||||||||||| ||||||||||||    ||||||| 
seq2  ACCATTCAGCCACAACAGGTATCCTGACTAGCAGATGTGGCAGAATGTGA  787

seq1  GCATGTGTGCACCCATGTGTCACAAAAAAATAACACAGATGTACACAGAT  843
      || ||||||| |||  | ||| |||| | || || |||| | ||||||||
seq2  GCGTGTGTGCGCCCGGGGGTCTCAAACACATCACGCAGAGGGACACAGAT  837

seq1  ACTCATGTAATCACACAGTTGTTTGCTTGGTTTTATTTTTTTAAAGATTG  893
      | ||||||||||||||||| |   |||| |||||| ||||| ||||||||
seq2  AGTCATGTAATCACACAGTGGCAGGCTTCGTTTTA-TTTTTCAAAGATTG  886

seq1  ACACCTGATCTATCTTTCACCCTTTGCATATCCAAAGTTGCTGGTCAGAA  943
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACACCTGATCTATCTTTCACCATTTGCATATCCAAAGTTGCTGGTCAGAA  936

seq1  GTCCTGGAACCTTCCCTGCAGCCTGGCCAGTCTCAAGATAACTGGAATTC  993
      |||| |||||||| |  |||||||||||||||||||||||| ||||||||
seq2  GTCCGGGAACCTT-CAGGCAGCCTGGCCAGTCTCAAGATAAGTGGAATTC  985