BAC Information

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BAC

Clone NameB6Ng01-025H17
Chromosome18 (Build37)11 (Build37)
Map Location 6,281,256 - 6,282,22957,734,357 - 57,734,777
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp438, LOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469
Downstream geneEG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025H17.bB6Ng01-025H17.g
ACCDH856818DH856819
length968281
definitionDH856818|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H17, 5' end.DH856819|Mus musculus domesticus DNA, BAC clone: B6Ng01-025H17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,281,256 - 6,282,229)(57,734,357 - 57,734,777)
sequence
gaattcaggacaccttccatcctgcctgtcacccccaccccgcaccccat
tcctttcctgccacagctagaacaacaaaagagagtcagctgcttcctac
gcgacctaagaggcttgggtgagtcatcactttctctgacccagttgagg
tgtggctcctcaattcctctgaaacgttgccacccctaattttcagacca
gcctgttagagctggagagccagctctagagtaggctttcaacctcatga
attaaaaatgagtacacttaaagccccaaagtgcccactaacagacttga
aactaactttgtttgcctttaagcagacagacacaccttgggctcagctg
agagcatgtaggctttccaggccttgctctccagtgaccggaaaggcatg
tgaggggagccagctgtcagcgccagccctgcatgttatggcgtgtttgt
gacacgttcagaacgaataggaaataactccaagggtgtcttccagctca
tgtcctccaacactctgcctgtttgaaacagtagacatctgaacagctgc
aattacgtctctcccttccctcacccctctaccatccctttcttgtgcat
ggccagcaaagaactccctacatgcagtaggtgctcaatagatgtgtagt
cagagagaagatataagtgaatgggaccgcagtgattactattgctaatc
tcccaaaggagtttcacagtactttgtagctctctgcttcttcttcagtg
tacttcaagcattgtacaagatttgagattgtgaatgcttccttcattct
tttttagtaatcgggatggctggagatgggcaggatgaccggctcacctc
ctggtgcagcaggtagaactcatcttccttgtttgttcttaagcttttcc
ttctggactgaacaatatcaaagaggaaagagagtcctgacctgattcag
tctgactgatttaagtcc
tgttcacatagggcagctcacaatgactagtagctataccatcaggggat
ctgatgcctctgcctcctttgattcatgcactcacatgcacatactcaca
cacaaaataagagattggagaaatggcccagcatgtattgctcttgctga
ggagctgagttaggctcccactatttatgttaggcaattcttatctgtct
ttaactttggctcaggaaatcctaaaccctgttctagcctctttgacagt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_6281256_6282229
seq2: B6Ng01-025H17.b_30_999

seq1  CGGAATTCAGGACACCTTCCATCCTGCCTGTCACCCCCACCCCGCACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATTCAGGACACCTTCCATCCTGCCTGTCACCCCCACCCCGCACCCC  50

seq1  ATTCCTTTCCTGCCACAGCTAGAACAACAAAAGAGAGTCAGCTGCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTCCTGCCACAGCTAGAACAACAAAAGAGAGTCAGCTGCTTCCT  100

seq1  ACGCGACCTAAGAGGCTTGGGTGAGTCATCACTTTCTCTGACCCAGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGACCTAAGAGGCTTGGGTGAGTCATCACTTTCTCTGACCCAGTTGA  150

seq1  GGTGTGGCTCCTCAATTCCTCTGAAACGTTGCCACCCCTAATTTTCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCTCCTCAATTCCTCTGAAACGTTGCCACCCCTAATTTTCAGAC  200

seq1  CAGCCTGTTAGAGCTGGAGAGCCAGCTCTAGAGTAGGCTTTCAACCTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTTAGAGCTGGAGAGCCAGCTCTAGAGTAGGCTTTCAACCTCAT  250

seq1  GAATTAAAAATGAGTACACTTAAAGCCCCAAAGTGCCCACTAACAGACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAAATGAGTACACTTAAAGCCCCAAAGTGCCCACTAACAGACTT  300

seq1  GAAACTAACTTTGTTTGCCTTTAAGCAGACAGACACACCTTGGGCTCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAACTTTGTTTGCCTTTAAGCAGACAGACACACCTTGGGCTCAGC  350

seq1  TGAGAGCATGTAGGCTTTCCAGGCCTTGCTCTCCAGTGACCGGAAAGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGCATGTAGGCTTTCCAGGCCTTGCTCTCCAGTGACCGGAAAGGCA  400

seq1  TGTGAGGGGAGCCAGCTGTCAGCGCCAGCCCTGCATGTTATGGCGTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGGAGCCAGCTGTCAGCGCCAGCCCTGCATGTTATGGCGTGTTT  450

seq1  GTGACACGTTCAGAACGAATAGGAAATAACTCCAAGGGTGTCTTCCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACACGTTCAGAACGAATAGGAAATAACTCCAAGGGTGTCTTCCAGCT  500

seq1  CATGTCCTCCAACACTCTGCCTGTTTGAAACAGTAGACATCTGAACAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTCCAACACTCTGCCTGTTTGAAACAGTAGACATCTGAACAGCT  550

seq1  GCAATTACGTCTCTCCCTTCCCTCACCCCTCTACCATCCCTTTCTTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTACGTCTCTCCCTTCCCTCACCCCTCTACCATCCCTTTCTTGTGC  600

seq1  ATGGCCAGCAAAGAACTCCCTACATGCAGTAGGTGCTCAATAGATGTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCAGCAAAGAACTCCCTACATGCAGTAGGTGCTCAATAGATGTGTA  650

seq1  GTCAGAGAGAAGATATAAGTGAATGGGACCGCAGTGATTACTATTGCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAGAAGATATAAGTGAATGGGACCGCAGTGATTACTATTGCTAA  700

seq1  TCTCCCAAAGGAGTTTCACAGTACTTTGTAGCTCTCTGCTTCTTCTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAAGGAGTTTCACAGTACTTTGTAGCTCTCTGCTTCTTCTTCAG  750

seq1  TGTACTTCAAGCATTGTACAAGATTTGAGATTGTGAATGCTTCCTTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTCAAGCATTGTACAAGATTTGAGATTGTGAATGCTTCCTTCATT  800

seq1  CTTGTTTAGTAATCGGGAAGGCTGGAGATGGGCAGGATGACCGGCTCACC  850
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTTTTTAGTAATCGGGATGGCTGGAGATGGGCAGGATGACCGGCTCACC  850

seq1  TCCTGGTGCAGCAGGGTAGAACTCAGTCTTCCTTGTTTGTACATTAAGCT  900
      ||||||||||||| ||||||||||| |||||||||||||| | |||||||
seq2  TCCTGGTGCAGCA-GGTAGAACTCA-TCTTCCTTGTTTGTTC-TTAAGCT  897

seq1  TTTCCTTCTGGACTGAACAAAGATCAAAGAGGAAAGAGAGTCCTGACCTG  950
      |||||||||||||||||| || ||||||||||||||||||||||||||||
seq2  TTTCCTTCTGGACTGAAC-AATATCAAAGAGGAAAGAGAGTCCTGACCTG  946

seq1  ATTCAGTCTGACTGATTTAAGTCC  974
      ||||||||||||||||||||||||
seq2  ATTCAGTCTGACTGATTTAAGTCC  970

seq1: chr11_57734357_57734777
seq2: B6Ng01-025H17.g_310_351 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACACAAATCCTATTA  50
              ||||||||||||||||||||||||||||||||    || | |
seq2  --------CACACACACACACACACACACACACACACACA----CTGTCA  38

seq1  AAGTTATTTTAAGCTTCGATGCATGTATTTGTGTACTGTATTGCACAGGG  100
      |||                                               
seq2  AAGA----------------------------------------------  42

seq1  GTGCTTCATACAGTTATATATGCTATGTTAAGAACAGTGTCTTCTTGATG  150
                                                        
seq2  --------------------------------------------------  42

seq1  CTGGTCCTATCTTCCTCTTACCTGGTTTTATCAACAAAATGTCCATGTGA  200
                                                        
seq2  --------------------------------------------------  42

seq1  GAAAAATTCCCATCTCTAAGAAAGAAATGCCAAGAACACAGGCTTAGGGT  250
                                                        
seq2  --------------------------------------------------  42

seq1  CAGGACAACAGAACTATCCCATGAAAAGGTCCTCCCTGGGACTCAGTTTC  300
                                                        
seq2  --------------------------------------------------  42

seq1  TCTATTTGCACAATGAGCCAGGTGATTTTTCAAGCACACACACCCATATA  350
                                                        
seq2  --------------------------------------------------  42

seq1  GGCTCCCTTCCCAGTGTTTCACACTCAACTTCCCCACACACACACACACA  400
                                                        
seq2  --------------------------------------------------  42

seq1  CACTGCCACCACCATCAAAGA  421
                           
seq2  ---------------------  42