BAC Information

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BAC

Clone NameB6Ng01-025J01
Chromosome11 (Build37)
Map Location 48,417,683 - 48,418,782
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039647, LOC192895, Hn1l-ps2
Downstream geneLOC667163, LOC432554, Gnb2l1, Trim41, LOC100039945, Trim7, Irgm, EG432555, OTTMUSG00000005523, Psme2b-ps, LOC667214, Tgtp, LOC667219, 9930111J21Rik, Olfr56, LOC100039796, Ifi47, Olfr1396, Olfr1395, Olfr1394, Btnl9, Zfp62, Mgat1, Olfr1393, Olfr1392, Olfr10, Olfr1391, Olfr1390, LOC667286, Olfr1389, Olfr1388, Olfr1387, Olfr1386, Olfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025J01.bB6Ng01-025J01.g
ACCDH856874DH856875
length1,0001,085
definitionDH856874|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J01, 5' end.DH856875|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcttaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggtg
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgagttggaaggagcaatttgcaaatttgtctggaataacaaaaaaac
ctaggatagcaaaaagtctttctcaaggataaaagaactttctggcggaa
tcaccatgccagacctaaagctttactacagagcaattgtgataaaaact
gcatggtactggtatagagacagacaagtagaccaaggaatagaattgaa
gatccagaaatgaacccacacacctatggtcacttgatcttcgacatggg
agctaaaacatccatggagaaggacagcattttcaacaattggtgctggc
acaactggtgtattgtgagaaaattcgaattgattccacctatcccttgt

gaattcctttcccagacttcaaagtgtgagacttcgctgttgtggtttac
ttattttccctttattcttagctgtgttagctttctggcagggagtcaag
gtgttctgtgaaggctacagcagcccttaggtatttgtaagacgaggaaa
atgccaggaacaaggtgtgaaggtgatgtacagaaattggacagcgggga
atttagtgagctttgtcgtgctttccttgtcctttctctttaggaacaga
gaaagtcagaagtaatacaatccataaatgttccttccttccttgttctc
ctcttccatctcttctccttctatttttcccatacatccgttatctatcc
atctgttcatccatgtacccactcatccaaccatccatcatccatgcatg
caatatttattactatatatatataaaaaccaaccaggcatctcttgtgc
taccaagatagatgtttagtccctggcttctggaaatgtgtaactgaggg
aagaagacagcactgtcatcatcaccactgaactttatgtacttggtcca
aacaaccaggtaaagaagggctgttacctttgaacagcatggggctgatg
gtcaggagaaggtcctcagagcagggttcccaaatatatcctgaagagtt
aggaatcacagagggagggatgagatccaaggtcacatgaaggggggttt
tgaacatagacagaaaaggatgaactaaagatgtaccattacataaatgg
ctttgaaaaacatgtaagactttgcagcttctggaagcttctgctgacat
gtaccaggttgtcaggacccagtgtgattggtggtggactgtgcagggga
ctgtcatgtcactgatattaaaaaaaatgtccccttttgcatttacttca
gaccaatcctagtattgagcgctttgaggacctgacctcactgaccacgt
gtgactatggcgtatgtgcatgagagaatgtctcagtgatgcccagtcac
agctttgaatacgctgaatcccaacgtaacttttatttctttttctgcta
cttcagagaagttcagttggagctgcatttttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_48417683_48418782
seq2: B6Ng01-025J01.g_64_1148 (reverse)

seq1  GTTAAAAATACCCAGGCTTCAAACTGAAACTTTCTCCTTGAAGTAAGCAG  50
      |||||||||   |||   || |||||||   |||||  |||||| |||||
seq2  GTTAAAAAT--GCAG--CTCCAACTGAA--CTTCTC--TGAAGT-AGCAG  41

seq1  AAAAAGAAATAAAAAGGTAACGTTGGGATTCAGCGTTATTCAGAGCTGTG  100
      ||||||||||||||  || |||||||||||||||| |||||| |||||||
seq2  AAAAAGAAATAAAA--GTTACGTTGGGATTCAGCG-TATTCAAAGCTGTG  88

seq1  ACTGGGCATCACTGAGAACATTCTCTCATTGCACATACGCCATAGTCACA  150
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  ACTGGGCATCACTGAG-ACATTCTCTCA-TGCACATACGCCATAGTCACA  136

seq1  CGTGGTTCAGTGAGGTCAGGTCCTCAAAGCGCTCAATACTAGGATTGGTC  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGG-TCAGTGAGGTCAGGTCCTCAAAGCGCTCAATACTAGGATTGGTC  185

seq1  TGAAGTAAATGCAAAAGGGGACATTTTTTTTAATATCAGTGACATGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAAATGCAAAAGGGGACATTTTTTTTAATATCAGTGACATGACAG  235

seq1  TCCCCTGCACAGTCCACCACCAATCACACTGGGTCCTGACAACCTGGTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGCACAGTCCACCACCAATCACACTGGGTCCTGACAACCTGGTAC  285

seq1  ATGTCAGCAGAAGCTTCCAGAAGCTGCAAAGTCTTACATGTTTTTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGCAGAAGCTTCCAGAAGCTGCAAAGTCTTACATGTTTTTCAAAG  335

seq1  CCATTTATGTAATGGTACATCTTTAGTTCATCCTTTTCTGTCTATGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTATGTAATGGTACATCTTTAGTTCATCCTTTTCTGTCTATGTTCA  385

seq1  AAACCCCCCTTCATGTGACCTTGGATCTCATCCCTCCCTCTGTGATTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCCTTCATGTGACCTTGGATCTCATCCCTCCCTCTGTGATTCCT  435

seq1  AACTCTTCAGGATATATTTGGGAACCCTGCTCTGAGGACCTTCTCCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCAGGATATATTTGGGAACCCTGCTCTGAGGACCTTCTCCTGAC  485

seq1  CATCAGCCCCATGCTGTTCAAAGGTAACAGCCCTTCTTTACCTGGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCCCCATGCTGTTCAAAGGTAACAGCCCTTCTTTACCTGGTTGTT  535

seq1  TGGACCAAGTACATAAAGTTCAGTGGTGATGATGACAGTGCTGTCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAAGTACATAAAGTTCAGTGGTGATGATGACAGTGCTGTCTTCTT  585

seq1  CCCTCAGTTACACATTTCCAGAAGCCAGGGACTAAACATCTATCTTGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGTTACACATTTCCAGAAGCCAGGGACTAAACATCTATCTTGGTA  635

seq1  GCACAAGAGATGCCTGGTTGGTTTTTATATATATATAGTAATAAATATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGAGATGCCTGGTTGGTTTTTATATATATATAGTAATAAATATTG  685

seq1  CATGCATGGATGATGGATGGTTGGATGAGTGGGTACATGGATGAACAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATGGATGATGGATGGTTGGATGAGTGGGTACATGGATGAACAGAT  735

seq1  GGATAGATAACGGATGTATGGGAAAAATAGAAGGAGAAGAGATGGAAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGATAACGGATGTATGGGAAAAATAGAAGGAGAAGAGATGGAAGAG  785

seq1  GAGAACAAGGAAGGAAGGAACATTTATGGATTGTATTACTTCTGACTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAGGAAGGAAGGAACATTTATGGATTGTATTACTTCTGACTTTC  835

seq1  TCTGTTCCTAAAGAGAAAGGACAAGGAAAGCACGACAAAGCTCACTAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTAAAGAGAAAGGACAAGGAAAGCACGACAAAGCTCACTAAAT  885

seq1  TCCCCGCTGTCCAATTTCTGTACATCACCTTCACACCTTGTTCCTGGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCGCTGTCCAATTTCTGTACATCACCTTCACACCTTGTTCCTGGCAT  935

seq1  TTTCCTCGTCTTACAAATACCTAAGGGCTGCTGTAGCCTTCACAGAACAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCGTCTTACAAATACCTAAGGGCTGCTGTAGCCTTCACAGAACAC  985

seq1  CTTGACTCCCTGCCAGAAAGCTAACACAGCTAAGAATAAAGGGAAAATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTCCCTGCCAGAAAGCTAACACAGCTAAGAATAAAGGGAAAATAA  1035

seq1  GTAAACCACAACAGCGAAGTCTCACACTTTGAAGTCTGGGAAAGGAATTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCACAACAGCGAAGTCTCACACTTTGAAGTCTGGGAAAGGAATTC  1085