BAC Information

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BAC

Clone NameB6Ng01-025J09
Chromosome11 (Build37)
Map Location 56,272,329 - 56,396,754
singlet/doubletdoublet
Overlap geneLOC624168
Upstream geneAtox1, G3bp, Glra1, Nmur2, LOC100040816
Downstream geneGria1, LOC667878, 1810073G14Rik, Mfap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025J09.bB6Ng01-025J09.g
ACCDH856890DH856891
length7451,100
definitionDH856890|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J09, 5' end.DH856891|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,396,012 - 56,396,754)(56,272,329 - 56,272,914)
sequence
gaattcagcacagctgctactctcctgtctcctaggactcggatgtaaac
agtttattctggctcataagtggtttatgggcacagtcacaggaaaactg
gaaaaaaaaacacaatacttaacattcactatcaagacggtcaatgatag
attattgtcttcagtgtagaacatcctaaaaacaaactacacaaatttag
aacacagagatagttagcataaaatatgaatttcctcccagtgttgaaga
atagggttatcagcactggagagtcagatacctgggcagtgctagtagag
ccatggcagcaggctatggtatgctgctacctgtccctgggtggtaatga
gatgcccagtttcccacagtgacaatattcaattggctgatcagctttcc
catgggtatctgctggaatgaaaagcactcctttttttgtaacaagagca
aatgtgtattttttagaattttatgatatgatgtcatataaggccacttt
cgtgtataatatgctatgaacataatgttgttctgtaccagttcactaat
tctgactcctttagtccacttttagttatttatttacttatttttttagt
atagaatagagtttattcaaggcatggggaggggagctaagagggtagca
gaggcagagaaaggctgagagggacagagtagagaagtagaggctgccca
tgaacacatggagagggggaaaggaataggggaaggggaggggga
gaattctcacctgaggaataccgaatagctgagaaacacctgaaaaaatg
ctcagcatccttaatcatcagagaaatgcaaatcaaaataatcctgagat
tccatctcacaccaatcagaatggctaagatgaaaaattcaggtgacagc
agatgctggagaggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtacaaccagaggatcccgcaatacctctcctgagc
atatgtccagaagatttcccaactggtaagaaagacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagtacccagat
gcccctcaacaaaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcggctattaaaaggattgaatttatgaaattcctaggcaa
atggttggacctggagggcattatcctgagtgaggtaacctaatcacaaa
agaactcaaatgatatgtactcactgataagtggatagtagcccagaaac
gtagaataccgaagatataagttacaatttgcaaaacacatgaaactcaa
gaagaacgaagaccaaattgtggacactgccatttcttagaattgggaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagacaaa
agatggaccatctagagactgccatatccagggatccatcccatatttcc
attttctgaggaaccgccaatttgatttccaagggttgttgtaccagctt
tgcaatttctgcaagtagtgtggagatgttttttcttttttctacatctt
ttaccagcatctgctgttgcccgagttttttgatcttagtcattctgatt
gatgtaaagcgaacctcaggattttttgattcagttcccttgatgactta
agaatgtaaacgagaggagctggccggtctgcggcttccccgaacatggc
atcaagcctgcctcaaaactttcggtacctatgcacgaattgggtgaacc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56396012_56396754
seq2: B6Ng01-025J09.b_43_787 (reverse)

seq1  TCCCCCTCCC--TTCCCTATTCCTTTCCCCCTCTCCATGTGTTCATGGGC  48
      ||||||||||  | ||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCCCTTCCCCTATTCCTTTCCCCCTCTCCATGTGTTCATGGGC  50

seq1  AGCCTCTACTTCTCTACTCTGTCCCTCTCAGCCTTTCTCTGCCTCTGCTA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTACTTCTCTACTCTGTCCCTCTCAGCCTTTCTCTGCCTCTGCTA  100

seq1  CCCTCTTAGCTCCCCTCCCCATGCCTTGAATAAACTCTATTCTATACTAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTAGCTCCCCTCCCCATGCCTTGAATAAACTCTATTCTATACTAA  150

seq1  AAAAATAAGTAAATAAATAACTAAAAGTGGACTAAAGGAGTCAGAATTAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGTAAATAAATAACTAAAAGTGGACTAAAGGAGTCAGAATTAG  200

seq1  TGAACTGGTACAGAACAACATTATGTTCATAGCATATTATACACGAAAGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGGTACAGAACAACATTATGTTCATAGCATATTATACACGAAAGT  250

seq1  GGCCTTATATGACATCATATCATAAAATTCTAAAAAATACACATTTGCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTATATGACATCATATCATAAAATTCTAAAAAATACACATTTGCTC  300

seq1  TTGTTACAAAAAAAGGAGTGCTTTTCATTCCAGCAGATACCCATGGGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACAAAAAAAGGAGTGCTTTTCATTCCAGCAGATACCCATGGGAAA  350

seq1  GCTGATCAGCCAATTGAATATTGTCACTGTGGGAAACTGGGCATCTCATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCAGCCAATTGAATATTGTCACTGTGGGAAACTGGGCATCTCATT  400

seq1  ACCACCCAGGGACAGGTAGCAGCATACCATAGCCTGCTGCCATGGCTCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCAGGGACAGGTAGCAGCATACCATAGCCTGCTGCCATGGCTCTA  450

seq1  CTAGCACTGCCCAGGTATCTGACTCTCCAGTGCTGATAACCCTATTCTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTGCCCAGGTATCTGACTCTCCAGTGCTGATAACCCTATTCTTC  500

seq1  AACACTGGGAGGAAATTCATATTTTATGCTAACTATCTCTGTGTTCTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGGAGGAAATTCATATTTTATGCTAACTATCTCTGTGTTCTAAA  550

seq1  TTTGTGTAGTTTGTTTTTAGGATGTTCTACACTGAAGACAATAATCTATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTAGTTTGTTTTTAGGATGTTCTACACTGAAGACAATAATCTATC  600

seq1  ATTGACCGTCTTGATAGTGAATGTTAAGTATTGTGTTTTTTTTTCCAGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCGTCTTGATAGTGAATGTTAAGTATTGTGTTTTTTTTTCCAGTT  650

seq1  TTCCTGTGACTGTGCCCATAAACCACTTATGAGCCAGAATAAACTGTTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGACTGTGCCCATAAACCACTTATGAGCCAGAATAAACTGTTTA  700

seq1  CATCCGAGTCCTAGGAGACAGGAGAGTAGCAGCTGTGCTGAATTC  743
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGAGTCCTAGGAGACAGGAGAGTAGCAGCTGTGCTGAATTC  745

seq1: chr11_56272329_56272914
seq2: B6Ng01-025J09.g_579_1166

seq1  GGAGGGCATTATCCTGAGTGAGGTAACCTAATCACAAAAGAACTCAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCATTATCCTGAGTGAGGTAACCTAATCACAAAAGAACTCAAATG  50

seq1  ATATGTACTCACTGATAAGTGGATAGTAGCCCAGAAACGTAGAATACCGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACTCACTGATAAGTGGATAGTAGCCCAGAAACGTAGAATACCGA  100

seq1  AGATATAAGTTACAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATAAGTTACAATTTGCAAAACACATGAAACTCAAGAAGAACGAAGA  150

seq1  CCAAATTGTGGACACTGCCATTTCTTAGAATTGGGAACAAAACACCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTGTGGACACTGCCATTTCTTAGAATTGGGAACAAAACACCCATG  200

seq1  GAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGATGGACCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAAGATGGACCATC  250

seq1  TAGAGACTGCCATATCCAGGGATCCATCCCATATTTCCAATTTTCTGAGG  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGAGACTGCCATATCCAGGGATCCATCCCATATTTCC-ATTTTCTGAGG  299

seq1  AACCGCCAAATTGATTTCCAA-GGTTGTTGTACCAGC-TTGCAA-TTCTG  347
      ||||||||| ||||||||||| ||||||||||||||| |||||| |||||
seq2  AACCGCCAATTTGATTTCCAAGGGTTGTTGTACCAGCTTTGCAATTTCTG  349

seq1  CAAGTAGTGTGGAGATGTTTTT--CTTTTTCTACATC-TTTACCAGCATC  394
      ||||||||||||||||||||||   |||||||||||| ||||||||||||
seq2  CAAGTAGTGTGGAGATGTTTTTTCTTTTTTCTACATCTTTTACCAGCATC  399

seq1  TGCTGTTGCCCGAG-TTTTTGATCTTAGTCATTCTGATTGATGTAAAGTG  443
      |||||||||||||| |||||||||||||||||||||||||||||||||  
seq2  TGCTGTTGCCCGAGTTTTTTGATCTTAGTCATTCTGATTGATGTAAAG-C  448

seq1  GAACCTCAGGGTCTTTTTGATTTTCAGTTCCC-TGATGAC-TAAGAATGT  491
      |||||||||| | |||||||  |||||||||| ||||||| |||||||| 
seq2  GAACCTCAGGAT-TTTTTGA--TTCAGTTCCCTTGATGACTTAAGAATG-  494

seq1  TAAACGAGAGGAGCTGGCCGGTCTGCCGGCGTCCGCGGACAGTGGCATCA  541
      ||||||||||||||||||||||||| |||| ||| || ||| ||||||||
seq2  TAAACGAGAGGAGCTGGCCGGTCTG-CGGCTTCCCCGAACA-TGGCATCA  542

seq1  AGCCCTGCTCCAAAACTTTCGGCACC-ATGCACGAGCT-GGTGAACC  586
      || |||||  |||||||||||| ||| ||||||||  | ||||||||
seq2  AG-CCTGCCTCAAAACTTTCGGTACCTATGCACGAATTGGGTGAACC  588