BAC Information

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BAC

Clone NameB6Ng01-025K06
Chromosome11 (Build37)
Map Location 72,282,526 - 72,395,824
singlet/doubletdoublet
Overlap gene9830002I17Rik, LOC432577
Upstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a
Downstream geneUbe2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025K06.bB6Ng01-025K06.g
ACCDH856928DH856929
length6291,095
definitionDH856928|Mus musculus domesticus DNA, BAC clone: B6Ng01-025K06, 5' end.DH856929|Mus musculus domesticus DNA, BAC clone: B6Ng01-025K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,282,526 - 72,283,154)(72,394,721 - 72,395,824)
sequence
gaattcagggtcaggaatgtgccaggtcacctttgcagcctgatgaggag
cctccagctcttcctagccctcaggggtatcactggccaatggcagtccc
tgtacgctgctaggataggtacaggaggaacaatccaagcaaaggacaga
gaactatatgtccctcagaaacaatgggcactgagaggcctacagagcca
gtaggcagttctgctgggaataaaaaccagcaacagctagaagcttcctg
tgctgtccaccccagcctccctctttgtgggaggacagctttcagaccag
actagctaccccgccccacccccaacctcagtgtaggcagagtggatttc
ccggcagttcccgcatacacgaggacatcctgtggccagggtgtggggaa
gacctcactcagctcacgcttgctgagcccacaggtctaggacaatggag
ctgtagggcaagtagccaggcagaggggggagggtacccaggctactgtt
gatgggaggagtcccagctcagcattagagctcaggcaccaagcctcact
ctccttcatagggttggctcaaggccatcagaaaatggaaaggagcctgg
gtgagggtatatggtatgtgtgtgtgttt
gaattctcaggaagaatggaaaacaagctcccctctctgcagatgtggca
gaaggccacctcctaaagcccgtcacctggcctcttgcacaagagccacc
tgaggacacctgatcacaggcagctttcggagccaagcctctattcctgc
caatgaggccccaggcaggagagggacttggtcaggtagccaaggctgct
ctatcacaggagttggtggagtggttgctaggcatgacatgaaaatgaaa
taagatcaattaagtcctctgctcctaagaagctgagggaacgaggtgct
tctatgcttctgattcaagaatgtttttccttggctccagtattaagaga
aaggtcagaaacctttgtaaggaggcagcctcctgctgaggtcaggcctc
tctgagagtgtaccttgctgtctcttacttcccactgagacttgggagct
agcatctcaagactgccaaaccacatgtccacatagacaccctctgttaa
cggagacctgactcagaagttgccaggcaggatcctggctctcgcacagc
atgagagccacctccttggaatacactgtggtacaacaggcaggtcagtt
agagcctaagcttgaagagagaggaagccaaagtgaggccagaagggtta
ccttctctcttctcctgcactcccccacccccaccaaggaagtcaagaac
acaagccacattttcagttgcttatttttaatgattacttttttatttta
aaattatgtcatgaacatgagccacattttcatttgtttacttttaatga
ttaacttttattgtaaactatgtatacatgtgtgggtggccttgtgccca
tgagtgcaggtgcccatattgcccagaggcctttcgatcccctggagctg
cagcttgatatgagtcctggaggaactcaactgggttcctcttgagagca
gtgcatactctttactacggagcatttcttcagaaccatgattacatttt
ttataaagggggttggttgttgttggttggaaccgtcttctagataggcc
ggctggcctagaactcaccattagaccagctcatgcctcaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_72282526_72283154
seq2: B6Ng01-025K06.b_41_669

seq1  GAATTCAGGGTCAGGAATGTGCCAGGTCACCTTTGCAGCCTGATGAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTCAGGAATGTGCCAGGTCACCTTTGCAGCCTGATGAGGAG  50

seq1  CCTCCAGCTCTTCCTAGCCCTCAGGGGTATCACTGGCCAATGGCAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCTCTTCCTAGCCCTCAGGGGTATCACTGGCCAATGGCAGTCCC  100

seq1  TGTACGCTGCTAGGATAGGTACAGGAGGAACAATCCAAGCAAAGGACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGCTGCTAGGATAGGTACAGGAGGAACAATCCAAGCAAAGGACAGA  150

seq1  GAACTATATGTCCCTCAGAAACAATGGGCACTGAGAGGCCTACAGAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATATGTCCCTCAGAAACAATGGGCACTGAGAGGCCTACAGAGCCA  200

seq1  GTAGGCAGTTCTGCTGGGAATAAAAACCAGCAACAGCTAGAAGCTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCAGTTCTGCTGGGAATAAAAACCAGCAACAGCTAGAAGCTTCCTG  250

seq1  TGCTGTCCACCCCAGCCTCCCTCTTTGTGGGAGGACAGCTTTCAGACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCACCCCAGCCTCCCTCTTTGTGGGAGGACAGCTTTCAGACCAG  300

seq1  ACTAGCTACCCCGCCCCACCCCCAACCTCAGTGTAGGCAGAGTGGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTACCCCGCCCCACCCCCAACCTCAGTGTAGGCAGAGTGGATTTC  350

seq1  CCGGCAGTTCCCGCATACACGAGGACATCCTGTGGCCAGGGTGTGGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGTTCCCGCATACACGAGGACATCCTGTGGCCAGGGTGTGGGGAA  400

seq1  GACCTCACTCAGCTCACGCTTGCTGAGCCCACAGGTCTAGGACAATGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACTCAGCTCACGCTTGCTGAGCCCACAGGTCTAGGACAATGGAG  450

seq1  CTGTAGGGCAAGTAGCCAGGCAGAGGGGGGAGGGTACCCAGGCTACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGGCAAGTAGCCAGGCAGAGGGGGGAGGGTACCCAGGCTACTGTT  500

seq1  GATGGGAGGAGTCCCAGCTCAGCATTAGAGCTCAGGCACCAAGCCTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGGAGTCCCAGCTCAGCATTAGAGCTCAGGCACCAAGCCTCACT  550

seq1  CTCCTTCATAGGGTTGGCTCAAGGCCATCAGAAAATGGAAAGGAGCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCATAGGGTTGGCTCAAGGCCATCAGAAAATGGAAAGGAGCCTGG  600

seq1  GTGAGGGTATATGGTATGTGTGTGTGTTT  629
      |||||||||||||||||||||||||||||
seq2  GTGAGGGTATATGGTATGTGTGTGTGTTT  629

seq1: chr11_72394721_72395824
seq2: B6Ng01-025K06.g_68_1162 (reverse)

seq1  GAATTTGAGGC-TAGCCTGGTCTACATAGTGAGTTCTAGGACAGCCGGGG  49
      ||||||||||| |   |||||||| || |||||||||||| ||||| || 
seq2  GAATTTGAGGCATGAGCTGGTCTA-ATGGTGAGTTCTAGGCCAGCC-GGC  48

seq1  CTATGCTAGAGAGACCGTTTCAAACAACAAACAAACAAAACCCCCTTTTT  99
      |||| ||||| |||| ||| ||| |||| ||||| |  |||||||  |||
seq2  CTAT-CTAGA-AGACGGTTCCAACCAAC-AACAACC--AACCCCC--TTT  91

seq1  AAAAAAAATGTAATCATGGGTCTGAAGAGATGGCTCCGTAGTTAAGAGTA  149
      | ||||||||||||||||| |||||||| || |||||||||| |||||||
seq2  ATAAAAAATGTAATCATGGTTCTGAAGAAAT-GCTCCGTAGTAAAGAGTA  140

seq1  TGCACTGCTCTTCCAGAGG-ACCCAGGTGAGTTCCTCCAGGACTCATATC  198
      |||||||||| || ||||| |||||| |||||||||||||||||||||||
seq2  TGCACTGCTC-TCAAGAGGAACCCAGTTGAGTTCCTCCAGGACTCATATC  189

seq1  AAGCTGCAGCTCCAGGGGATCG-AAGGCCTCTGGGCAATATGGGCACCTG  247
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGCTGCAGCTCCAGGGGATCGAAAGGCCTCTGGGCAATATGGGCACCTG  239

seq1  CACTCATGGGCACAAGGCCACCCACACATGTATACATAGTTTTACAATAA  297
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACTCATGGGCACAAGGCCACCCACACATGTATACATAG-TTTACAATAA  288

seq1  AAGTTAATCATTAAAAGTAAACAAATGAAAATGTGGCTCATGTTCATGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAATCATTAAAAGTAAACAAATGAAAATGTGGCTCATGTTCATGAC  338

seq1  ATAATTTTAAAATAAAAAAGTAATCATTAAAAATAAGCAACTGAAAATGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTAAAATAAAAAAGTAATCATTAAAAATAAGCAACTGAAAATGT  388

seq1  GGCTTGTGTTCTTGACTTCCTTGGTGGGGGTGGGGGAGTGCAGGAGAAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGTTCTTGACTTCCTTGGTGGGGGTGGGGGAGTGCAGGAGAAGA  438

seq1  GAGAAGGTAACCCTTCTGGCCTCACTTTGGCTTCCTCTCTCTTCAAGCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGTAACCCTTCTGGCCTCACTTTGGCTTCCTCTCTCTTCAAGCTT  488

seq1  AGGCTCTAACTGACCTGCCTGTTGTACCACAGTGTATTCCAAGGAGGTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTAACTGACCTGCCTGTTGTACCACAGTGTATTCCAAGGAGGTGG  538

seq1  CTCTCATGCTGTGCGAGAGCCAGGATCCTGCCTGGCAACTTCTGAGTCAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATGCTGTGCGAGAGCCAGGATCCTGCCTGGCAACTTCTGAGTCAG  588

seq1  GTCTCCGTTAACAGAGGGTGTCTATGTGGACATGTGGTTTGGCAGTCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCGTTAACAGAGGGTGTCTATGTGGACATGTGGTTTGGCAGTCTTG  638

seq1  AGATGCTAGCTCCCAAGTCTCAGTGGGAAGTAAGAGACAGCAAGGTACAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTAGCTCCCAAGTCTCAGTGGGAAGTAAGAGACAGCAAGGTACAC  688

seq1  TCTCAGAGAGGCCTGACCTCAGCAGGAGGCTGCCTCCTTACAAAGGTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGAGGCCTGACCTCAGCAGGAGGCTGCCTCCTTACAAAGGTTTC  738

seq1  TGACCTTTCTCTTAATACTGGAGCCAAGGAAAAACATTCTTGAATCAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTCTCTTAATACTGGAGCCAAGGAAAAACATTCTTGAATCAGAA  788

seq1  GCATAGAAGCACCTCGTTCCCTCAGCTTCTTAGGAGCAGAGGACTTAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGAAGCACCTCGTTCCCTCAGCTTCTTAGGAGCAGAGGACTTAATT  838

seq1  GATCTTATTTCATTTTCATGTCATGCCTAGCAACCACTCCACCAACTCCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATTTCATTTTCATGTCATGCCTAGCAACCACTCCACCAACTCCT  888

seq1  GTGATAGAGCAGCCTTGGCTACCTGACCAAGTCCCTCTCCTGCCTGGGGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGAGCAGCCTTGGCTACCTGACCAAGTCCCTCTCCTGCCTGGGGC  938

seq1  CTCATTGGCAGGAATAGAGGCTTGGCTCCGAAAGCTGCCTGTGATCAGGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGCAGGAATAGAGGCTTGGCTCCGAAAGCTGCCTGTGATCAGGT  988

seq1  GTCCTCAGGTGGCTCTTGTGCAAGAGGCCAGGTGACGGGCTTTAGGAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCAGGTGGCTCTTGTGCAAGAGGCCAGGTGACGGGCTTTAGGAGGT  1038

seq1  GGCCTTCTGCCACATCTGCAGAGAGGGGAGCTTGTTTTCCATTCTTCCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCTGCCACATCTGCAGAGAGGGGAGCTTGTTTTCCATTCTTCCTG  1088

seq1  AGAATTC  1104
      |||||||
seq2  AGAATTC  1095