BAC Information

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BAC

Clone NameB6Ng01-025N02
Chromosome11 (Build37)1 (Build37)
Map Location 108,047,098 - 108,048,01610,734,306 - 10,734,817
singlet/doubletsingletsinglet
Overlap genePrkca
Upstream geneNol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025N02.bB6Ng01-025N02.g
ACCDH857043DH857044
length1,043897
definitionDH857043|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N02, 5' end.DH857044|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(108,047,098 - 108,048,016)(10,734,306 - 10,734,817)
sequence
gaattcaccatttaacattttaaaattttctaagggaaaaatgctcagag
cagctttttatcataaattctacctcatcttcccctctccacccattctt
gcaatgggcatttccctttggcacttttgtaagtacttgattagaattgc
caatacatgctaccaaccttctccactgacagcacacgccacccacccat
cggcccctcttcctttcccttcagggctcactctttgaaggagccaatca
caaacccattagatgcacaacaaacagcatacaatggtacccaggacgtt
ttttactttctctagtatgcctcagtatccttactacaaaacaagattaa
cctagactgatctctaacacccttccagctctgtagttctgtgtcttcga
aatgtattcagaaaagcacatgagatggggagatggcttaatggttaaag
tgttggctgcacaagcctgtggacctgtgtttggatccccagcacccgtg
taaggggcgcagtggcatgcaactgtaatccctgtgctgaggtaggctat
gtgtagctggactttagctattttgtgggttcttcttacttccactcttc
tccacaccttttcttccaccctttcaaccccctacactagacaggagaga
aaaaagcatagggggaaaaagggtgacattattgttagaccacttcccgc
taattaggggcattgagttccttggggcaagtttgatcttcaacatcagg
atatttaatttcttcttgttgtttcttcttttgcacctgactacctaaca
aaccatgaccaccaacaaccaatagcaaccaaccaccagccagccccacc
ctgctttgggaccctagcatttatatatcctctgaaaacttgacagaatt
ccaaacatcacacaatcacaggaagtatctgcagctggcaaaatcacatc
cctgctagtgcatgagcaaatcatggtcagatgctgtggacaatctgagt
cagctccatattccatatctgggtttaaatgaacaatttatta
gaattcttgaggagtcaggcaggtataaggtgaagaaatgaaatgtgatt
gttctgagcaaggctctgacatgtgcaggtgtgtgtgtgtgtgtgtgtcc
tccatctatctctcccctctttccttccatcaaggagaattctgaagatt
aatgttcccacgactgtgccttctccagaggtcacactacagcagcatgt
attcccagtagtgtgagtgcagcaaaagaacccagagtgccctccaggcc
ctgggagcattcataatgagattattgccttccctggagttcctatgggc
acagtccacccagcccgtttctccccctgggagtttagctcctcctttct
ctgagctgcttaggaagagaggctgctggtagtagaaggagcttgctttc
tttcttcctttctttctttctttctttctttctttctttctttctttctt
ttaattagatattttcttcatttacatttcaaatgctatcctgaaagtcc
cctataccctcacctctgccctgctccctaacccacccactccctcttcc
tggccctggcattcccctgtactggggcatagaaccttcacaagaccaag
ggcctctcctcccattgatggccaactaggccatcctctactacatatgc
aactagagacacaagctctgggggttactggttagttcatattgctgttc
ctcctatagggttgcagacccctttagcctccttggttactttctctagc
tccttcattgtggaccctgtgttccattcaacagatgactgtgagcatcc
acttctgtatttgccaggcactggcatagcctcacaagaaagggtcaggg
tcctgtcagcaaaatcttgctggcatatgcaatagtgcctgggtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_108047098_108048016
seq2: B6Ng01-025N02.b_41_958

seq1  GAATTCACCATTTAACATTTTAAAATTTTCTAAGGGAAAAATGCTCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATTTAACATTTTAAAATTTTCTAAGGGAAAAATGCTCAGAG  50

seq1  CAGCTTTTTATCATAAATTCTACCTCATCTTCCCCTCTCCACCCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTTTATCATAAATTCTACCTCATCTTCCCCTCTCCACCCATTCTT  100

seq1  GCAATGGGCATTTCCCTTTGGCACTTTTGTAAGTACTTGATTAGAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGGCATTTCCCTTTGGCACTTTTGTAAGTACTTGATTAGAATTGC  150

seq1  CAATACATGCTACCAACCTTCTCCACTGACAGCACACGCCACCCACCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATGCTACCAACCTTCTCCACTGACAGCACACGCCACCCACCCAT  200

seq1  CGGCCCCTCTTCCTTTCCCTTCAGGGCTCACTCTTTGAAGGAGCCAATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCCTCTTCCTTTCCCTTCAGGGCTCACTCTTTGAAGGAGCCAATCA  250

seq1  CAAACCCATTAGATGCACAACAAACAGCATACAATGGTACCCAGGACGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCATTAGATGCACAACAAACAGCATACAATGGTACCCAGGACGTT  300

seq1  TTTTACTTTCTCTAGTATGCCTCAGTATCCTTACTACAAAACAAGATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTCTCTAGTATGCCTCAGTATCCTTACTACAAAACAAGATTAA  350

seq1  CCTAGACTGATCTCTAACACCCTTCCAGCTCTGTAGTTCTGTGTCTTCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACTGATCTCTAACACCCTTCCAGCTCTGTAGTTCTGTGTCTTCGA  400

seq1  AATGTATTCAGAAAAGCACATGAGATGGGGAGATGGCTTAATGGTTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTCAGAAAAGCACATGAGATGGGGAGATGGCTTAATGGTTAAAG  450

seq1  TGTTGGCTGCACAAGCCTGTGGACCTGTGTTTGGATCCCCAGCACCCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCTGCACAAGCCTGTGGACCTGTGTTTGGATCCCCAGCACCCGTG  500

seq1  TAAGGGGCGCAGTGGCATGCAACTGTAATCCCTGTGCTGAGGTAGGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGGCGCAGTGGCATGCAACTGTAATCCCTGTGCTGAGGTAGGCTAT  550

seq1  GTGTAGCTGGACTTTAGCTATTTTGTGGGTTCTTCTTACTTCCACTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGCTGGACTTTAGCTATTTTGTGGGTTCTTCTTACTTCCACTCTTC  600

seq1  TCCACACCTTTTCTTCCACCCTTTCAACCCCCTACACTAGACAGGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACCTTTTCTTCCACCCTTTCAACCCCCTACACTAGACAGGAGAGA  650

seq1  AAAAAGCATAGGGGGAAAAAGGGTGACATTATTGTTAGACCACTTCCCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCATAGGGGGAAAAAGGGTGACATTATTGTTAGACCACTTCCCGC  700

seq1  TAATTAGGGGCATTGAGTTCCTTGGGGCAAGTTTGATCTTCAACATCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGGGGCATTGAGTTCCTTGGGGCAAGTTTGATCTTCAACATCAGG  750

seq1  ATATTTAATTTCTTCTTGTTGTTTCTTCTTTTGCACCTGACTACCTAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATTTCTTCTTGTTGTTTCTTCTTTTGCACCTGACTACCTAACA  800

seq1  AACCATGACCACCAACAACCAATAGCAACCAACCACCAGCCAGCCCCACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGACCACCAACAACCAATAGCAACCAACCACCAGCCAGCCCCACC  850

seq1  CTGCTTTTGGGACCCTAGCATTTATATATCCTCTGAAAACTTGACAGAAT  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGC-TTTGGGACCCTAGCATTTATATATCCTCTGAAAACTTGACAGAAT  899

seq1  TCCAAACATCACACAATCA  919
      |||||||||||||||||||
seq2  TCCAAACATCACACAATCA  918

seq1: chr1_10734306_10734817
seq2: B6Ng01-025N02.g_248_558

seq1  GTCACACTACAGCAGCATGGTAGGTACAGGAGGTACAGAAATGTATGCTA  50
      |||||||||||||||||| |||    ||| ||         |||      
seq2  GTCACACTACAGCAGCAT-GTATTCCCAGTAG---------TGT------  34

seq1  TAGTAATAGACATGTGCATAGCATAAG-CCTCTGTGAAGGCTTTTGTTCT  99
              ||   ||||  |||| |||  | | | |        ||  ||
seq2  --------GA---GTGC--AGCAAAAGAACCCAGAG--------TGCCCT  63

seq1  GCTGCTCATTGCAGAAGGCAAAAGAACGA-----GCGGACACAGAAGCCA  144
       | |  | | | || |  || ||  | ||     ||   | | | ||   
seq2  CCAGGCCCTGGGAGCATTCATAATGA-GATTATTGCCTTCCCTGGAGTTC  112

seq1  CTAAATGGG-ACCGAATTATATCCTTTGATCAGCAACCCATGCCCAAGAT  193
      ||  ||||| || |       |||           ||||| |||      
seq2  CT--ATGGGCACAG-------TCC-----------ACCCA-GCC------  135

seq1  GACTTATCTATTCCTGTCATATTCATATTAATCAATTCATGAGGATGGAA  243
        | | |||   ||||                          |||    |
seq2  --CGTTTCTCCCCCTG--------------------------GGAGTTTA  157

seq1  GCCTCATGGCCTATTCACTTCTTAGTGCTGTCACCATGGCAATTAAATTT  293
      | ||| |  |||      ||||  | ||||            |||     
seq2  G-CTCCT--CCT------TTCTCTGAGCTG-----------CTTA-----  182

seq1  CAACATGGATTTTTAAACAGGCAGTTGAAGCAAATTAAGTAGTATTAAAT  343
            |||     | | |||| | ||           ||||||  |   
seq2  ------GGA-----AGAGAGGCTGCTG-----------GTAGTAGAAGGA  210

seq1  TCTAGCAGTTATAAATTACATTTATTATTTAGAAACTTTTTGGACATACA  393
       || ||  || |   || | ||  || |||     |||| |         
seq2  GCTTGC-TTTCTTTCTTCCTTTCTTTCTTT-----CTTTCT---------  245

seq1  CGTAATTTAAATCCATTATATTCTAGATCAGTGGTTTCTAGCTGATGATG  443
                          ||||       |  |||||  ||       
seq2  --------------------TTCT-------TTCTTTCTTTCT-------  261

seq1  TGTCTCAGATACATGAGTGAAGTTTTTTTTAATTAGATATTTCCTTCATT  493
               | |          ||| |||||||||||||||| |||||||
seq2  ---------TTC----------TTTCTTTTAATTAGATATTTTCTTCATT  292

seq1  TACATTTCAAATGCTATCC  512
      |||||||||||||||||||
seq2  TACATTTCAAATGCTATCC  311