BAC Information

Click to search

BAC

Clone NameB6Ng01-025N23
Chromosome11 (Build37)
Map Location 98,913,182 - 99,083,745
singlet/doubletdoublet
Overlap geneIgfbp4, Tns4, Ccr7, Smarce1
Upstream geneStac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a
Downstream geneKrt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025N23.bB6Ng01-025N23.g
ACCDH857085DH857086
length783845
definitionDH857085|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N23, 5' end.DH857086|Mus musculus domesticus DNA, BAC clone: B6Ng01-025N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,082,954 - 99,083,745)(98,913,182 - 98,914,027)
sequence
gaattcagtattatttgagtacatttctttgggaaggggggtgaattagc
aaatctattaatgttctaaaatagtctttggaatatatgagcaaatatta
ctaactttgttttttaaatgttttaatttatacttaaaactttaaaagta
cacatgttaaaatttttaactgttaacaatattttggcaccttcaaatat
tggcacaacttttttcttttctttttttttttttttctcttcttcttttt
tggaacccactttgtgttccaaaagttcgtgtggagtctggattgaaaat
gttttctagtcacttcctgggttgagaagcaggcttccatggtgtaaagt
tactgatgactctgagtcctgccaactgtggtgcctgcttccctggtggc
tgctctagccactgtgacagtttctgcctccaggtctcattccattccac
tgcccactgctggctaagaccagatctgtctgtgagtcagagcagcaagg
atctgcccgtgtgcattttgctaattagagtaaagcactcctttttccca
ttcttgcaagagggtcagaccaggactcactcccctagtgatgtcaagtc
ggatagtaccaattacttcttattttggctcctccatcaagcactgataa
acaagagataggaaagttgagaaccagttgccttggagtagcagctttaa
atgggacttctgctgaagtcctgatgtctcctggctgttttcctcacagg
caggactagcagtaccttctcaccaacttcccc
gaattcattcattcattcattcattcatccacctgaaaacacgtattgaa
aacatactatgtgccagctttagttttcagcgccgggaagcctcgttgtg
atttcctccgattgtagaatgtgacgaggtgttctcaactcaaggcccac
gggagaagagaaacctcattcttggagtgagagagaaagaaagtggtgaa
cattgaacgccctccctctccatcttggccagagcgtaggaaggtgtaga
gtagaggctcacggctcctgagacccacctctgctctgtgctgctgcgta
gagctctctccttggggcctccagggcacaagcttgagggacagggccca
tctttggtcagggtattcggtcatccgacaatgccttgcaggtagatctc
tgctgtgggaaaggaatggggtgaggaaggccggaaggacagggggcagg
gaggtgggctcatcactctgagcctgcaggagagaggaaagaatgtgaga
ttggattgtgtgtgtctgaggaatggccccattctggtccctatttgtgg
ttattggtcatgaagtcaccaggatgactctatctttctagttgcccacc
acctgtggctttgcctccgtccccatatttccctacccttatacctccta
tcccgccatctctacccccctgggcattttctggcttgcctggatagatt
tagagacctgcttgttggctataatgtcttttcattctttcttcttcctt
ttttaaaaaaatcagaacaaaaccaaaaagtgtccagatcattgtgtttg
tttgatttatttacggtagagatggggaagaatcaggggtggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_99082954_99083745
seq2: B6Ng01-025N23.b_51_833 (reverse)

seq1  GGGGAAGTTGGTGAGAGAGTTACGTGCTAGCTCCTGCCTGTGAGGAAACA  50
      |||||||||||||||| || ||| |||||| |||||||||||||||||  
seq2  GGGGAAGTTGGTGAGA-AGGTAC-TGCTAG-TCCTGCCTGTGAGGAAAAC  47

seq1  GGCCAGGAGACATCAGGGACTTCAGCAGAAGTCCCATTTAAAGCTGCTAC  100
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGCCAGGAGACATCA-GGACTTCAGCAGAAGTCCCATTTAAAGCTGCTAC  96

seq1  TCCAAGGGCAACTGGTTCTCAACTTTTCTATCTCCTTGTTTTATCAGTGC  150
      ||||| |||||||||||||||||||| |||||| |||| |||||||||||
seq2  TCCAA-GGCAACTGGTTCTCAACTTTCCTATCT-CTTG-TTTATCAGTGC  143

seq1  TTTGATGGAGGAGCCAAAATAAGAAGTAATGTGTACTATCCGACTTGACA  200
       |||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  -TTGATGGAGGAGCCAAAATAAGAAGTAATTGGTACTATCCGACTTGACA  192

seq1  TCACTAGGGGAGTGAGTCCTGGTCCTGACCCTCTTGCAAGAATGGGAAAG  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  TCACTAGGGGAGTGAGTCCTGGT-CTGACCCTCTTGCAAGAATGGGAAAA  241

seq1  AGGAGTGCTTTACTCTAATTAGCAAAATGCACATGGGCAGATCCTTGCTG  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGAGTGCTTTACTCTAATTAGCAAAATGCACACGGGCAGATCCTTGCTG  291

seq1  CTCTGACTCACAGACAGATCTGGTCTTAGCCAGCAGTGGGCAGTGGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACTCACAGACAGATCTGGTCTTAGCCAGCAGTGGGCAGTGGAATG  341

seq1  GAATGAGACCTGGAGGCAGAAACTGTCACAGTGGCTAGAGCAGCCACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGACCTGGAGGCAGAAACTGTCACAGTGGCTAGAGCAGCCACCAG  391

seq1  GGAAGCAGGCACCACAGTTGGCAGGACTCAGAGTCATCAGTAACTTTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGCACCACAGTTGGCAGGACTCAGAGTCATCAGTAACTTTACA  441

seq1  CCATGGAAGCCTGCTTCTCAACCCAGGAAGTGACTAGAAAACATTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAAGCCTGCTTCTCAACCCAGGAAGTGACTAGAAAACATTTTCAA  491

seq1  TCCAGACTCCACACGAACTTTTGGAACACAAAGTGGGTTCCAAAAAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGACTCCACACGAACTTTTGGAACACAAAGTGGGTTCCAAAAAAGAA  541

seq1  GAAGAGAAAAAAAAAAAAAAAGAAAAGAAAAAAGTTGTGCCAATATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAAAAAAAAAAAAAAAGAAAAGAAAAAAGTTGTGCCAATATTTGA  591

seq1  AGGTGCCAAAATATTGTTAACAGTTAAAAATTTTAACATGTGTACTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCCAAAATATTGTTAACAGTTAAAAATTTTAACATGTGTACTTTTA  641

seq1  AAGTTTTAAGTATAAATTAAAACATTTAAAAAACAAAGTTAGTAATATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAAGTATAAATTAAAACATTTAAAAAACAAAGTTAGTAATATTT  691

seq1  GCTCATATATTCCAAAGACTATTTTAGAACATTAATAGATTTGCTAATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATATATTCCAAAGACTATTTTAGAACATTAATAGATTTGCTAATTC  741

seq1  ACCCCCCTTCCCAAAGAAATGTACTCAAATAATACTGAATTC  792
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCCTTCCCAAAGAAATGTACTCAAATAATACTGAATTC  783

seq1: chr11_98913182_98914027
seq2: B6Ng01-025N23.g_68_912

seq1  GAATTCATTCATTCATTCATTCATTCATCCACCTGAAAACACGTATTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATTCATTCATTCATTCATCCACCTGAAAACACGTATTGAA  50

seq1  AACATACTATGTGCCAGCTTTAGTTTTCAGCGCCGGGAAGCCTCGTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACTATGTGCCAGCTTTAGTTTTCAGCGCCGGGAAGCCTCGTTGTG  100

seq1  ATTTCCTCCGATTGTAGAATGTGACGAGGTGTTCTCAACTCAAGGCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCCGATTGTAGAATGTGACGAGGTGTTCTCAACTCAAGGCCCAC  150

seq1  GGGAGAAGAGAAACCTCATTCTTGGAGTGAGAGAGAAAGAAAGTGGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAGAGAAACCTCATTCTTGGAGTGAGAGAGAAAGAAAGTGGTGAA  200

seq1  CATTGAACGCCCTCCCTCTCCATCTTGGCCAGAGCGTAGGAAGGTGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACGCCCTCCCTCTCCATCTTGGCCAGAGCGTAGGAAGGTGTAGA  250

seq1  GTAGAGGCTCACGGCTCCTGAGACCCACCTCTGCTCTGTGCTGCTGCGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCTCACGGCTCCTGAGACCCACCTCTGCTCTGTGCTGCTGCGTA  300

seq1  GAGCTCTCTCCTTGGGGCCTCCAGGGCACAAGCTTGAGGGACAGGGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCTCCTTGGGGCCTCCAGGGCACAAGCTTGAGGGACAGGGCCCA  350

seq1  TCTTTGGTCAGGGTATTCGGTCATCCGACAATGCCTTGCAGGTAGATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTCAGGGTATTCGGTCATCCGACAATGCCTTGCAGGTAGATCTC  400

seq1  TGCTGTGGGAAAGGAATGGGGTGAGGAAGGCCGGAAGGACAGGGGGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGGAAAGGAATGGGGTGAGGAAGGCCGGAAGGACAGGGGGCAGG  450

seq1  GAGGTGGGCTCATCACTCTGAGCCTGCAGGAGAGAGGAAAGAATGTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGGCTCATCACTCTGAGCCTGCAGGAGAGAGGAAAGAATGTGAGA  500

seq1  TTGGATTGTGTGTGTCTGAGGAATGGCCCCATTCTGGTCCCTATTTGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATTGTGTGTGTCTGAGGAATGGCCCCATTCTGGTCCCTATTTGTGG  550

seq1  TTATTGGTCATGAAGTCACCAGGATGACTCTATCTTTCTAGTTGCCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTCATGAAGTCACCAGGATGACTCTATCTTTCTAGTTGCCCACC  600

seq1  ACCTGTGGCTTTGCCTCCGTCCCCATATTTCCCTACCCTTATACCTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGGCTTTGCCTCCGTCCCCATATTTCCCTACCCTTATACCTCCTA  650

seq1  TCCCGCCATCTCTACCCCCCTGGGCATTTTCTGGCTTGCCTGGATAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGCCATCTCTACCCCCCTGGGCATTTTCTGGCTTGCCTGGATAGATT  700

seq1  TAGAGACCTGCTTGTTGGCTATAATGTCTTTTCATTCTTTCTTCTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACCTGCTTGTTGGCTATAATGTCTTTTCATTCTTTCTTCTTCCTT  750

seq1  TTTTAAAAAAATCAGAACAAAACCAAAAAGTGTCCAGATCATTGTGTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAAATCAGAACAAAACCAAAAAGTGTCCAGATCATTGTGTTTG  800

seq1  TTTGATTTATTTACGGTTAGAGATGGGGATGAATCAGGGGTGGAGG  846
      |||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TTTGATTTATTTACGG-TAGAGATGGGGAAGAATCAGGGGTGGAGG  845