BAC Information

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BAC

Clone NameB6Ng01-026M02
Chromosome11 (Build37)
Map Location 94,061,532 - 94,176,085
singlet/doubletdoublet
Overlap geneTob1, Wfikkn2, 3300001P08Rik
Upstream geneCar10, LOC629636, Utp18, Mbtd1, Nme2, Nme1, Spag9, LOC100039431, LOC100039440
Downstream geneAnkrd40, Abcc3, Cacna1g, Spata20, Epn3, Mycbpap, Rsad1, BC018371, Chad, Lrrc59, Eme1, Mrpl27, Xylt2, OTTMUSG00000002038, Cdc34-ps, A430060F13Rik, Tmem92, LOC100039410, LOC544807, LOC544808, LOC665174, LOC432591, LOC100039739, Col1a1, Sgca, Hils1, Ppp1r9b, Samd14, Pdk2, Itga3, Dlx3, Dlx4, LOC100039437, Tac4, Myst2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026M02.bB6Ng01-026M02.g
ACCDH857698DH857699
length1,0151,038
definitionDH857698|Mus musculus domesticus DNA, BAC clone: B6Ng01-026M02, 5' end.DH857699|Mus musculus domesticus DNA, BAC clone: B6Ng01-026M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,061,532 - 94,062,549)(94,175,020 - 94,176,085)
sequence
gaattcttgaaacaaacagaaacattatttcaaaataaacccaaatcaga
tctcttccaaagtgctaagttaattgcttagggatagagcacagaggtag
gtctggcagtctgttttcacttatggaagagagagagagagagtagtttg
aactaaaggaagcttttggaaacaaaagttcttgtaaatatggccccaaa
tataaagattatatacaaaggtaggctatatgaaatagttgaacataggg
actacaatgtcctatttatttattttattatgtttattttattttatggt
gtgtacatgtgtgtttgtgcaccaagtgtgtgtgtgtgtgtaacatgcct
tggcatatctgtgaaggtcagaggtaagtctgtgctgatccgttctctta
ctctgccctgtgaggcccaggcgtcacttgggttatcaggcttgggagca
agtgcccctccttctgagccatctctccaggctcttagtattttattttt
aattgaaacggtaactgctcattgagaaacacttaagtaatatacaaaca
atgaaagctgggcgcagttgtccaggcctgtaagcatagcatttaagaag
agacagcaatgtaaggttattttcagctacatttggagtttgaggcccgc
ctgggctacatgaggcccccatctcaaacaacaacaaaccctacactctc
atgaaatacaaccatcttctctctaaacaacaaacaaaaccctgggatta
ttctatttttcagtagctttcttgtctcccccaggacgttacagtcttgt
ggaaatgaattaggggtcaaaattaagccagaggttcccatatcaatagt
tgaggaacaaaacccaggggtgccacagctcacagctgcatgatatttta
ttgaacccccattgtgtcccagccctagattgtgtgtacaattgggtgac
ttccttcttgttttcttttctttcctcttttgaagacggaatctgcatcc
tcacccttgactagc
gaattcctatgttcctttctacagacagaaatacatttcacttaacacaa
atagcagaattgtgtgtgtgcaacacccagccctagagaactatcagtgt
agtgggtgacaaataggaattgttaagtgtacttcagtgacacaataaga
atactacaatgacaaaaaccagaaggtgcaaagagcctggagcataaagt
ggcctttaagtcctggaacctaatggattggtaagaattagcctgaggaa
gggctaaaaatggcaggctgaagaaatgagtgcagttgggaaattttttt
tacaactgaagcccttgtttagatatctttggtggggagtgagataagca
agagttaacttcattacattggtaaacagttgaaggtttttaagcagtgg
atgtgttcactgcctggctgctgtggaagagtgattgaaattttatcatt
caaactatgtgaacagtaagaaacgtgtgagccgtgaccagcaaaggagt
ctatgacacagtgagagacacagactggttacttgaaagtatgatcatgg
tatagctggagcaaaaccatagcttgaaaactgactcttacacacccttt
ccaaaactgtctttgagacatttcttctgccttttttcccccctcttttt
tccttatataaattcctgtatctaaaaaaaaaaattaactaggcttggtg
gcacaaccctcagatcccagtactcaaaaggccaaggcaggaagaactca
aattctagggttgctggatgagactgttaaaacttatttggttctaggct
ggatatagctaaagttttatgatagaaaaaaaaaaaaccgactaaaaatt
tctggcgattctggatttaaattgatacatgtacagcagttgaagtcttt
ttgtatgtttgttgtttgtttgagacaggctcctgggtggcctgatgtct
tggacctactcagtagacagctgcctcgactcgaaatcactgctcggctc
cagagctagaataaggtgtgtgccactctaagtcttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_94061532_94062549
seq2: B6Ng01-026M02.b_40_1054

seq1  GAATTCTTGAAACAAACAGAAACATTATTTCAAAATAAACCCAAATCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAACAAACAGAAACATTATTTCAAAATAAACCCAAATCAGA  50

seq1  TCTCTTCCAAAGTGCTAAGTTAATTGCTTAGGGATAGAGCACAGAGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCAAAGTGCTAAGTTAATTGCTTAGGGATAGAGCACAGAGGTAG  100

seq1  GTCTGGCAGTCTGTTTTCACTTATGGAAGAGAGAGAGAGAGAGTAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCAGTCTGTTTTCACTTATGGAAGAGAGAGAGAGAGAGTAGTTTG  150

seq1  AACTAAAGGAAGCTTTTGGAAACAAAAGTTCTTGTAAATATGGCCCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGGAAGCTTTTGGAAACAAAAGTTCTTGTAAATATGGCCCCAAA  200

seq1  TATAAAGATTATATACAAAGGTAGGCTATATGAAATAGTTGAACATAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGATTATATACAAAGGTAGGCTATATGAAATAGTTGAACATAGGG  250

seq1  ACTACAATGTCCTATTTATTTATTTTATTATGTTTATTTTATTTTATGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAATGTCCTATTTATTTATTTTATTATGTTTATTTTATTTTATGGT  300

seq1  GTGTACATGTGTGTTTGTGCACCAAGTGTGTGTGTGTGTGTAACATGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATGTGTGTTTGTGCACCAAGTGTGTGTGTGTGTGTAACATGCCT  350

seq1  TGGCATATCTGTGAAGGTCAGAGGTAAGTCTGTGCTGATCCGTTCTCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATCTGTGAAGGTCAGAGGTAAGTCTGTGCTGATCCGTTCTCTTA  400

seq1  CTCTGCCCTGTGAGGCCCAGGCGTCACTTGGGTTATCAGGCTTGGGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCTGTGAGGCCCAGGCGTCACTTGGGTTATCAGGCTTGGGAGCA  450

seq1  AGTGCCCCTCCTTCTGAGCCATCTCTCCAGGCTCTTAGTATTTTATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCCTCCTTCTGAGCCATCTCTCCAGGCTCTTAGTATTTTATTTTT  500

seq1  AATTGAAACGGTAACTGCTCATTGAGAAACACTTAAGTAATATACAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAACGGTAACTGCTCATTGAGAAACACTTAAGTAATATACAAACA  550

seq1  ATGAAAGCTGGGCGCAGTTGTCCAGGCCTGTAAGCATAGCATTTAAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCTGGGCGCAGTTGTCCAGGCCTGTAAGCATAGCATTTAAGAAG  600

seq1  AGACAGCAATGTAAGGTTATTTTCAGCTACATTTGGAGTTTGAGGCCCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCAATGTAAGGTTATTTTCAGCTACATTTGGAGTTTGAGGCCCGC  650

seq1  CTGGGCTACATGAGGCCCCCATCTCAAACAACAACAAACCCTACACTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTACATGAGGCCCCCATCTCAAACAACAACAAACCCTACACTCTC  700

seq1  ATGAAATACAACCATCTTCTCTCTAAACAACAAACAAAACCCTGGGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATACAACCATCTTCTCTCTAAACAACAAACAAAACCCTGGGATTA  750

seq1  TTCTATTTTTCAGTAGCTTTCTTGTCTCCCCCAGGACGTTACAGTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTTCAGTAGCTTTCTTGTCTCCCCCAGGACGTTACAGTCTTGT  800

seq1  GGAAATGAATTA-GGGTCAAAATTAAGCCAGAGGTTCCCAAATCAAATAG  849
      |||||||||||| ||||||||||||||||||||||||||| ||| |||||
seq2  GGAAATGAATTAGGGGTCAAAATTAAGCCAGAGGTTCCCATATC-AATAG  849

seq1  TTGAGGAACAAAACCCAGGGGTGCCACAGCTCACAGCTGCATGATATTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAACAAAACCCAGGGGTGCCACAGCTCACAGCTGCATGATATTTT  899

seq1  ATTGAACCCCCATGGTGTCCCAGCCCTAAGATTGTGTGTACAATTGGGTG  949
      ||||||||||||| ||||||||||||| ||||||||||||||||||||||
seq2  ATTGAACCCCCATTGTGTCCCAGCCCT-AGATTGTGTGTACAATTGGGTG  948

seq1  ACTTTCTTTCCTGTTTTCTTTTCTTTCTCTCTTTTGAAGACAGAATCTTG  999
      || ||| ||| |||||||||||||||| ||||||||||||| ||||| ||
seq2  AC-TTCCTTCTTGTTTTCTTTTCTTTC-CTCTTTTGAAGACGGAATC-TG  995

seq1  CAATCTCACCC-TGACTAGC  1018
      ||  ||||||| ||||||||
seq2  CATCCTCACCCTTGACTAGC  1015

seq1: chr11_94175020_94176085
seq2: B6Ng01-026M02.g_64_1101 (reverse)

seq1  TTAAGACTTTAGTAGTGGCACACACCTTTAATCCTAGCTCTTGGGAGGCA  50
      ||||||| |||| |||||||||||||||  || ||||||||  ||| || 
seq2  TTAAGAC-TTAG-AGTGGCACACACCTT--ATTCTAGCTCT--GGA-GCC  43

seq1  GAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACTGAGTGAGT  100
      || ||||   |||||| ||| |||||| ||||   ||||||||||| || 
seq2  GA-GCAG--TGATTTC-GAG-TCGAGG-CAGC--TGTCTACTGAGT-AGG  84

seq1  TCCAGGACATCCAGGGCTACCCAGAGAAGCCCTGTCTCAAAACAAAACAA  150
      |||| ||||||   ||| |||||| ||   |||||||||||   ||||||
seq2  TCCAAGACATC--AGGCCACCCAG-GA--GCCTGTCTCAAA--CAAACAA  127

seq1  AACAAAACATAACAAAAAGACTTCAACTGCTGTACATGTATCAATTTAAA  200
          |||||| |||||||||||||||||||||||||||||||||||| ||
seq2  ---CAAACAT-ACAAAAAGACTTCAACTGCTGTACATGTATCAATTT-AA  172

seq1  ATCCAGAATCGCCAGAAATTTTTAGTCGGTTTTTTTTTTTTCTATCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGAATCGCCAGAAATTTTTAGTCGGTTTTTTTTTTTTCTATCATAA  222

seq1  AACTTTAGCTATATCCAGCCTAGAACCAAATAAGTTTTAACAGTCTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGCTATATCCAGCCTAGAACCAAATAAGTTTTAACAGTCTCATC  272

seq1  CAGCAACCCTAGAATTTGAGTTCTTCCTGCCTTGGCCTTTTGAGTACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCCTAGAATTTGAGTTCTTCCTGCCTTGGCCTTTTGAGTACTGG  322

seq1  GATCTGAGGGTTGTGCCACCAAGCCTAGTTAATTTTTTTTTTTAGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAGGGTTGTGCCACCAAGCCTAGTTAATTTTTTTTTTTAGATACA  372

seq1  GGAATTTATATAAGGAAAAAAGAGGGGGGAAAAAAGGCAGAAGAAATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTATATAAGGAAAAAAGAGGGGGGAAAAAAGGCAGAAGAAATGTC  422

seq1  TCAAAGACAGTTTTGGAAAGGGTGTGTAAGAGTCAGTTTTCAAGCTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACAGTTTTGGAAAGGGTGTGTAAGAGTCAGTTTTCAAGCTATGG  472

seq1  TTTTGCTCCAGCTATACCATGATCATACTTTCAAGTAACCAGTCTGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCCAGCTATACCATGATCATACTTTCAAGTAACCAGTCTGTGTC  522

seq1  TCTCACTGTGTCATAGACTCCTTTGCTGGTCACGGCTCACACGTTTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGTGTCATAGACTCCTTTGCTGGTCACGGCTCACACGTTTCTTA  572

seq1  CTGTTCACATAGTTTGAATGATAAAATTTCAATCACTCTTCCACAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCACATAGTTTGAATGATAAAATTTCAATCACTCTTCCACAGCAGC  622

seq1  CAGGCAGTGAACACATCCACTGCTTAAAAACCTTCAACTGTTTACCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGTGAACACATCCACTGCTTAAAAACCTTCAACTGTTTACCAATG  672

seq1  TAATGAAGTTAACTCTTGCTTATCTCACTCCCCACCAAAGATATCTAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAGTTAACTCTTGCTTATCTCACTCCCCACCAAAGATATCTAAAC  722

seq1  AAGGGCTTCAGTTGTAAAAAAAATTTCCCAACTGCACTCATTTCTTCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTCAGTTGTAAAAAAAATTTCCCAACTGCACTCATTTCTTCAGC  772

seq1  CTGCCATTTTTAGCCCTTCCTCAGGCTAATTCTTACCAATCCATTAGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATTTTTAGCCCTTCCTCAGGCTAATTCTTACCAATCCATTAGGTT  822

seq1  CCAGGACTTAAAGGCCACTTTATGCTCCAGGCTCTTTGCACCTTCTGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTTAAAGGCCACTTTATGCTCCAGGCTCTTTGCACCTTCTGGTT  872

seq1  TTTGTCATTGTAGTATTCTTATTGTGTCACTGAAGTACACTTAACAATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTGTAGTATTCTTATTGTGTCACTGAAGTACACTTAACAATTC  922

seq1  CTATTTGTCACCCACTACACTGATAGTTCTCTAGGGCTGGGTGTTGCACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGTCACCCACTACACTGATAGTTCTCTAGGGCTGGGTGTTGCACA  972

seq1  CACACAATTCTGCTATTTGTGTTAAGTGAAATGTATTTCTGTCTGTAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATTCTGCTATTTGTGTTAAGTGAAATGTATTTCTGTCTGTAGAA  1022

seq1  AGGAACATAGGAATTC  1066
      ||||||||||||||||
seq2  AGGAACATAGGAATTC  1038