BAC Information

Click to search

BAC

Clone NameB6Ng01-027J05
Chromosome11 (Build37)
Map Location 35,064,175 - 35,210,633
singlet/doubletdoublet
Overlap geneSlit3, LOC100039006
Upstream geneFoxi1, Dock2, EG574403, Dock2, Ccdc99, LOC100038976
Downstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027J05.bB6Ng01-027J05.g
ACCDH858283DH858284
length7631,037
definitionDH858283|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J05, 5' end.DH858284|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,064,175 - 35,064,935)(35,209,585 - 35,210,633)
sequence
gaattcattggtgctgtttaagaaaaactccccagcctgggacttctgag
gaactgtccaggttttcctggtggacgggctcactggtgtgccctagccc
cacttacctgacatatatagcccacttacctgcagctaattagccaggcc
tcagtgtggagtcccaaattgctgtgttaatgatgacaaccctccctcct
tccccaagaagtgctgattttcctgctcagcatgagggacttcagtaaga
tctctttccagtgatataatttgattcctccatgggaagcagctttggtc
ctagctcacttaacactaaatctttccatagatactctcattacttaatc
tttgcaggccccggaccagcccaggcctcttatttatttatctagggccc
tgtttatttccccgttgtaaattacttctggctcctggcagtctgattgc
ctcggtgatagactaatagctaggagcttctgcacatgccttttgtgatg
aagcaaataatacacttagcttatgggagagaaagacaccctccatttat
tccagtagggggaatattcctcagaggaaagggtcaaatcacttacctca
tagctgctcgtggaagtcagtgtaattactgacagaattatgtgaaacaa
atcatcccatctataaatcagattctctggttctctaaggcagaagggga
gttctgttggtttgaacaggctctgcctctcacatggggtggggtttcta
aaaatagtgagtt
gaattcataccaggatcgggatgagctgagctcagatgccccttgatggg
atggagctgaagagagaggcatcctcccgctgagaaccatgactctaatt
gaaggttaatcataccatttcagtgtcagacttgagctgttctgcctagt
tgtcccagaactgggtggggattccgaaacacctctaggctttgctttat
agaaaattagttgagaacccacaaaacctgtaaaagctctgcctatgacc
attgttgaattggcctattctcctctcacgcaaacgcttttgcctgcaat
tcagactcataaaaagagaaaatgaaagagtcacagagactactgcagca
gatactgaggtgagacgtggcacctgatgtcagaactaggaatcggagct
aagcatggcaaattctagtgtgcatggggcacggagctcacaaaagaatg
gcaggaaactgccaggtgcaaacagccatgaacagacagacctgtggtta
ctaccactctgagcatccaagaagtacttgataaatatagataggatgag
ccgcataatcacagtcccaagaaacagctcttgaagccaagactttattt
catgttggagctttaggctctaaaccactcttgagtaatgtctcctgcca
atctgtcacttgagttgcttcggaaacctttccttaaaggaattccacac
ccataagaagtttattactctgtcatcccatttgttaggctagttgtgat
acgtcagaggaacgtaaataatcccattcaattgaaaacaaaaacaaaaa
ccaagctttcttgcaagcattcagaacttttggcatctcaagctccggtc
tgcatttttccaaatgctgggctgatttttttcatgattgtatgttgaaa
aagccatgaggggcggggtgcgcagactctcagatgacctttcaggagaa
actggctacatctggctctcctctgacaactgcttatcgacctgtttcct
ttgccttaactggaatgtacgtttccgaccgtcccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_35064175_35064935
seq2: B6Ng01-027J05.b_45_806

seq1  GAATTCATTGGTGCTGTTTAAGAAAAACTCCCCAGCCTGGGACTTCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGTGCTGTTTAAGAAAAACTCCCCAGCCTGGGACTTCTGAG  50

seq1  GAACTGTCCAGGTTTTCCTGGTGGACGGGCTCACTGGTGTGCCCTAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTCCAGGTTTTCCTGGTGGACGGGCTCACTGGTGTGCCCTAGCCC  100

seq1  CACTTACCTGACATATATAGCCCACTTACCTGCAGCTAATTAGCCAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTACCTGACATATATAGCCCACTTACCTGCAGCTAATTAGCCAGGCC  150

seq1  TCAGTGTGGAGTCCCAAATTGCTGTGTTAATGATGACAACCCTCCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGGAGTCCCAAATTGCTGTGTTAATGATGACAACCCTCCCTCCT  200

seq1  TCCCCAAGAAGTGCTGATTTTCCTGCTCAGCATGAGGGACTTCAGTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGAAGTGCTGATTTTCCTGCTCAGCATGAGGGACTTCAGTAAGA  250

seq1  TCTCTTTCCAGTGATATAATTTGATTCCTCCATGGGAAGCAGCTTTGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCCAGTGATATAATTTGATTCCTCCATGGGAAGCAGCTTTGGTC  300

seq1  CTAGCTCACTTAACACTAAATCTTTCCATAGATACTCTCATTACTTAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTCACTTAACACTAAATCTTTCCATAGATACTCTCATTACTTAATC  350

seq1  TTTGCAGGCCCCGGACCAGCCCAGGCCTCTTATTTATTTATCTAGGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGGCCCCGGACCAGCCCAGGCCTCTTATTTATTTATCTAGGGCCC  400

seq1  TGTTTATTTCCCCGTTGTAAATTACTTCTGGCTCCTGGCAGTCTGATTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTTCCCCGTTGTAAATTACTTCTGGCTCCTGGCAGTCTGATTGC  450

seq1  CTCGGTGATAGACTAATAGCTAGGAGCTTCTGCACATGCCTTTTGTGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTGATAGACTAATAGCTAGGAGCTTCTGCACATGCCTTTTGTGATG  500

seq1  AAGCAAATAATACACTTAGCTTATGGGAGAGAAAGACACCCTCCATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAATAATACACTTAGCTTATGGGAGAGAAAGACACCCTCCATTTAT  550

seq1  TCCAGTAGGGGGAATATTCCTCAGAGGAAAGGGTCAAATCACTTACCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTAGGGGGAATATTCCTCAGAGGAAAGGGTCAAATCACTTACCTCA  600

seq1  TAGCTGCTCGTGGAAGTCAGTGTAATTACTGACAGAATTATGTGAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGCTCGTGGAAGTCAGTGTAATTACTGACAGAATTATGTGAAACAA  650

seq1  ATCATCCCATCTATAAATCAGATTCTCTGGTTCTCTAAGGCAGAAGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCCATCTATAAATCAGATTCTCTGGTTCTCTAAGGCAGAAGGGGA  700

seq1  GTTCTGTTGGTTTGAACAGGCTCTGCCTCTCACATGGGGTGGGGTTTCT-  749
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTCTGTTGGTTTGAACAGGCTCTGCCTCTCACATGGGGTGGGGTTTCTA  750

seq1  AAAATAGTGAGT  761
      ||||||||||||
seq2  AAAATAGTGAGT  762

seq1: chr11_35209585_35210633
seq2: B6Ng01-027J05.g_67_1103 (reverse)

seq1  GTGGCGACGGTTCGAGAAACGTACATTTTCCCAGGATAAGACAAAGGAAA  50
      |||| ||||| ||| ||||||||||||   ||| | |||| |||||||||
seq2  GTGG-GACGG-TCG-GAAACGTACATT---CCA-GTTAAGGCAAAGGAAA  43

seq1  CAGGTTCGATACAGCAGGTGTCAGAGGAGAGCCAGATGTAGACAGGTTTC  100
      |||| |||||| ||||| ||||||||||||||||||||||| || |||||
seq2  CAGG-TCGATA-AGCAGTTGTCAGAGGAGAGCCAGATGTAGCCA-GTTTC  90

seq1  TCCTGAAGGGTCATCTGAGAGTCTTGCGCACCCCGCCCCTCATGGCTTTT  150
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TCCTGAAAGGTCATCTGAGAGTC-TGCGCACCCCGCCCCTCATGGCTTTT  139

seq1  TCAACATACAGTCATGAAAAAAATCAGCCCAGCATTTGGAAAAATGCAGA  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAACATACAATCATGAAAAAAATCAGCCCAGCATTTGGAAAAATGCAGA  189

seq1  -CGGAGCTTGAGATGCCAAAAGTTCTGAATGCTTGCAAGAAAGCTTTGGT  249
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCGGAGCTTGAGATGCCAAAAGTTCTGAATGCTTGCAAGAAAGC-TTGGT  238

seq1  TTTTGTTTTTTGTTTTCAATTGAATGGGATTATTTACGTTCCTCTGACGT  299
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTG-TTTTTGTTTTCAATTGAATGGGATTATTTACGTTCCTCTGACGT  287

seq1  ATCACAACTAGCCTAACAAATGGGATGACAGAGTAATAAACTTCTTATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAACTAGCCTAACAAATGGGATGACAGAGTAATAAACTTCTTATGG  337

seq1  GTGTGGAATTCCTTTAAGGAAAGGTTTCCGAAGCAACTCAAGTGACAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGAATTCCTTTAAGGAAAGGTTTCCGAAGCAACTCAAGTGACAGAT  387

seq1  TGGCAGGAGACATTACTCAAGAGTGGTTTAGAGCCTAAAGCTCCAACATG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAGACATTACTCAAGAGTGGTTTAGAGCCTAAAGCTCCAACATG  437

seq1  AAATAAAGTCTTGGCTTCAAGAGCTGTTTCTTGGGACTGTGATTATGCGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGTCTTGGCTTCAAGAGCTGTTTCTTGGGACTGTGATTATGCGG  487

seq1  CTCATCCTATCTATATTTATCAAGTACTTCTTGGATGCTCAGAGTGGTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTATCTATATTTATCAAGTACTTCTTGGATGCTCAGAGTGGTAG  537

seq1  TAACCACAGGTCTGTCTGTTCATGGCTGTTTGCACCTGGCAGTTTCCTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACAGGTCTGTCTGTTCATGGCTGTTTGCACCTGGCAGTTTCCTGC  587

seq1  CATTCTTTTGTGAGCTCCGTGCCCCATGCACACTAGAATTTGCCATGCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTGTGAGCTCCGTGCCCCATGCACACTAGAATTTGCCATGCTT  637

seq1  AGCTCCGATTCCTAGTTCTGACATCAGGTGCCACGTCTCACCTCAGTATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGATTCCTAGTTCTGACATCAGGTGCCACGTCTCACCTCAGTATC  687

seq1  TGCTGCAGTAGTCTCTGTGACTCTTTCATTTTCTCTTTTTATGAGTCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAGTAGTCTCTGTGACTCTTTCATTTTCTCTTTTTATGAGTCTGA  737

seq1  ATTGCAGGCAAAAGCGTTTGCGTGAGAGGAGAATAGGCCAATTCAACAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGGCAAAAGCGTTTGCGTGAGAGGAGAATAGGCCAATTCAACAAT  787

seq1  GGTCATAGGCAGAGCTTTTACAGGTTTTGTGGGTTCTCAACTAATTTTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAGGCAGAGCTTTTACAGGTTTTGTGGGTTCTCAACTAATTTTCT  837

seq1  ATAAAGCAAAGCCTAGAGGTGTTTCGGAATCCCCACCCAGTTCTGGGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAAAGCCTAGAGGTGTTTCGGAATCCCCACCCAGTTCTGGGACA  887

seq1  ACTAGGCAGAACAGCTCAAGTCTGACACTGAAATGGTATGATTAACCTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCAGAACAGCTCAAGTCTGACACTGAAATGGTATGATTAACCTTC  937

seq1  AATTAGAGTCATGGTTCTCAGCGGGAGGATGCCTCTCTCTTCAGCTCCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGTCATGGTTCTCAGCGGGAGGATGCCTCTCTCTTCAGCTCCAT  987

seq1  CCCATCAAGGGGCATCTGAGCTCAGCTCATCCCGATCCTGGTATGAATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCAAGGGGCATCTGAGCTCAGCTCATCCCGATCCTGGTATGAATTC  1037