BAC Information

Click to search

BAC

Clone NameB6Ng01-027J21
Chromosome11 (Build37)
Map Location 17,344,042 - 17,344,970
singlet/doubletsinglet
Overlap genenone
Upstream geneSec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486
Downstream geneEG665748, Etaa1, LOC327871, LOC627696, LOC627716
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027J21.bB6Ng01-027J21.g
ACCDH858315DH858316
length9271,041
definitionDH858315|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J21, 5' end.DH858316|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttccccatgaatctatttagaggatcaccagcattgtagcctca
gacaacagaatgcatttacccctcaaatcctattccactgcccaaggttc
atattgtccctgaccacatggaataaagtacacaagttattttatcaagg
atcatctgagactgactctggcacttggtggagggctcttctcccaaagc
actcattgttggaccttagacctgcttgcctggccaagctcccatggctg
ccatggctagcagagggtcacatcagggagctggttgctgacatcaccat
tgccatcacagctgctgggacctgggaccataaccacctgccctgtgcag
gaaacctgatagtctttctaagaacttgttatatcttttctaagaactgt
aagactccctgcattccaaccagaccagagctctgtggaacctaattgtc
ctggactttgcttcaccctccttggtctggtgtacagcaatgtctgatgt
cccagagggaaggggcagaccttgaactccacctactctagactttctcc
tgtatctaagcaccccatcaggagaggtgatatggggaacaatacatgaa
gaactgtcttaaaaagtcataacattagaaaggttgagaaccactgttct
agttggttgctagttatagtttgtcccagagtatagaataaaataaaaag
taccacttaacattgtgaatagggtgtggagttttagtactttttatagg
gtacttattgtggttgtttgggtgagagatgtacctcatagctcatgtat
tttgaacatcccagctgatagcactgtctgaggaagttatagagggttaa
gaatgtggagaaatacctccatggcagtatgctctgaaggtgggcaatct
atcggacatcctgtcgctctctctctc
gaattctttatttagccttgcatcccatttttaatagggttaattggttc
tctggaatctaacttcttgagttctttgtatatactggatattagccctc
tatcagatgtaggattagtaaagatcttttcccaatctgttggtttctgt
tttgtcctattgacagtatcctttgccttatagaagctttgcaattttat
gagatcccatttgtcaattcttgatcttagagctaaagccattgatattt
tgttcagaaacttttcccctgtgactatgtgttcaagactttcccccact
tactcttctattagaatcagtgaatctggttttatgtggagatccttgat
ccatttggacttgagctttgtacagagatgtaataggtcaattttcattc
ttctacatgttgacttccagttgaatcaacaccatttgttcaaaatgctg
tccttttcccactagatagttttagctcctttgtcaaaggtcaagtgacc
atagctatgtgggttcatttctgggtcttcacttttattccattgatctt
cctatctgtctctgtaccaatacaatgcagtttttatcactgttgttctg
tagtacagcttgaggtcagggatgctgatccctcctcagaagttctttta
ttgtggagaatagttttagctatccgaggttttggttatttcaaacgaat
ttgagaattgctctttctaattctatgaagaattgagttggaattttgat
ggggatagcattgaatctatagattgctctcagcaagacggacattttta
ctatatcaatcctgccaatccacaagcatgggagatctttctgtcttctg
aggtcttcttcaatttcattcttcagagacttgaggtcttctcatacaga
tctttgactttttggtagaagtcacactacgatatttttaattgtttggt
gactatggggaaggggaatttccttaattctcttctcagcccggtcatcc
tctggtgaagagaggggactggcttgtgtgggtaaattata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_17344042_17344970
seq2: B6Ng01-027J21.b_50_976

seq1  GAATTCTTCCCCATGAATCTATTTAGAGGATCACCAGCATTGTAGCCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCATGAATCTATTTAGAGGATCACCAGCATTGTAGCCTCA  50

seq1  GACAACAGAATGCATTTACCCCTCAAATCCTATTCCACTGCCCAAGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACAGAATGCATTTACCCCTCAAATCCTATTCCACTGCCCAAGGTTC  100

seq1  ATATTGTCCCTGACCACATGGAATAAAGTACACAAGTTATTTTATCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTCCCTGACCACATGGAATAAAGTACACAAGTTATTTTATCAAGG  150

seq1  ATCATCTGAGACTGACTCTGGCACTTGGTGGAGGGCTCTTCTCCCAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTGAGACTGACTCTGGCACTTGGTGGAGGGCTCTTCTCCCAAAGC  200

seq1  ACTCATTGTTGGACCTTAGACCTGCTTGCCTGGCCAAGCTCCCATGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTGTTGGACCTTAGACCTGCTTGCCTGGCCAAGCTCCCATGGCTG  250

seq1  CCATGGCTAGCAGAGGGTCACATCAGGGAGCTGGTTGCTGACATCACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTAGCAGAGGGTCACATCAGGGAGCTGGTTGCTGACATCACCAT  300

seq1  TGCCATCACAGCTGCTGGGACCTGGGACCATAACCACCTGCCCTGTGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATCACAGCTGCTGGGACCTGGGACCATAACCACCTGCCCTGTGCAG  350

seq1  GAAACCTGATAGTCTTTCTAAGAACTTGTTATATCTTTTCTAAGAACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGATAGTCTTTCTAAGAACTTGTTATATCTTTTCTAAGAACTGT  400

seq1  AAGACTCCCTGCATTCCAACCAGACCAGAGCTCTGTGGAACCTAATTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCCTGCATTCCAACCAGACCAGAGCTCTGTGGAACCTAATTGTC  450

seq1  CTGGACTTTGCTTCACCCTCCTTGGTCTGGTGTACAGCAATGTCTGATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTTGCTTCACCCTCCTTGGTCTGGTGTACAGCAATGTCTGATGT  500

seq1  CCCAGAGGGAAGGGGCAGACCTTGAACTCCACCTACTCTAGACTTTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGGGAAGGGGCAGACCTTGAACTCCACCTACTCTAGACTTTCTCC  550

seq1  TGTATCTAAGCACCCCATCAGGAGAGGTGATATGGGGAACAATACATGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTAAGCACCCCATCAGGAGAGGTGATATGGGGAACAATACATGAA  600

seq1  GAACTGTCTTAAAAAGTCATAACATTAGAAAGGTTGAGAACCACTGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTCTTAAAAAGTCATAACATTAGAAAGGTTGAGAACCACTGTTCT  650

seq1  AGTTGGTTGCTAGTTATAGTTTGTCCCAGAGTATAGAATAAAATAAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTGCTAGTTATAGTTTGTCCCAGAGTATAGAATAAAATAAAAAG  700

seq1  TACCACTTAACATTGTGAATAGGGTGTGGAGTTTTAGTACTTTTTATAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTTAACATTGTGAATAGGGTGTGGAGTTTTAGTACTTTTTATAGG  750

seq1  GTACTTATTGTGGTTGTTTGGGTGAGAGATGTACCTCATAGCTCATGTA-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTACTTATTGTGGTTGTTTGGGTGAGAGATGTACCTCATAGCTCATGTAT  800

seq1  TTTGAACATCCCAGCTGATAGCACTGTCTGAGGAAGTTATAGAGGCTTAA  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTGAACATCCCAGCTGATAGCACTGTCTGAGGAAGTTATAGAGGGTTAA  850

seq1  GAATGTGGAGGAAATACCTCCATGGCAGTAGGCTCTGAAGGTGGGCAATC  899
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  GAATGTGGA-GAAATACCTCCATGGCAGTATGCTCTGAAGGTGGGCAATC  899

seq1  TCATCTGACCTCCTGCTCGCTCTCTCTCTC  929
      | ||| ||| ||||| ||||||||||||||
seq2  T-ATCGGACATCCTG-TCGCTCTCTCTCTC  927