BAC Information

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BAC

Clone NameB6Ng01-028K04
Chromosome11 (Build37)
Map Location 109,714,696 - 109,881,150
singlet/doubletdoublet
Overlap geneLOC100041492, Abca8b
Upstream geneCcdc46, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1, Prkar1a, BC029169, 1700012B07Rik, 1700023C21Rik
Downstream geneAbca8a, Abca9, Abca6, Abca5, Map2k6, LOC100041523, Kcnj16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028K04.bB6Ng01-028K04.g
ACCDH859063DH859064
length1,142766
definitionDH859063|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K04, 5' end.DH859064|Mus musculus domesticus DNA, BAC clone: B6Ng01-028K04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,879,987 - 109,881,150)(109,714,696 - 109,715,462)
sequence
gaattctccttcgcctcggacgtgtcactccttgattggctgcagcccat
cggccgagttgacgtcacggggaaagcagagcacaagtagtcataagata
cccttggcacatgcgcagattatttgtttaccacttagaacacaggatgt
cagcgccatcttgtaacggcgaatgtgggggcggctcccaacaacaactt
catttccatttcagttatacatgcatgagacaaagaaagcaatgacccaa
agaaggttgtttgaaatcagaaaggcatggtcaaagacaaacaaacaaac
aaaatgaaataacagcatataaatagacatcagtaagctcatagtaaata
ttacaaggaagccttttcccaaaactttttcaagacagacctgttttaac
acaattgcctggcacacactgtagcttatagagagagaggcacagaggca
aagcagaaggccatatctagagtcagagtacactgatcagattgggttct
ataactgtgttccaacatccatcaagaataaacatgtcttataactgaat
gtaaatgtttgtcacaggagtcaggaaagcacattcaagaacaatacatg
gaacagatgcacttgaggtaaaacgccctctgcctttttcactggagcct
ctctcaaagttccctaaggctttctttaccatgtgccattcctttaacag
tgttctttttttttttttttttggaatgtggaaatagattttttttttta
cgtattttcctcaattacatttccaatgctatcccaaaagtcccccacac
cctgccacccccactcccctacccacccatttccattttttggccctggc
gttcccctgtactggggcatataaagtttgcctgaccaatggcctctctt
tccattgatggccgactaggccatctttgatacctatgcagctagagtca
gagctctgggtactggttagttcataatgttgttccaccgataggtgtag
atctctttagctctggatactttctctagctcctccattgtgggccatgt
gatccatcatagtgactgtagcatccactcctgtttgttagctgactaat
ctcacaaggacagcttattcacgtcttgcacaaaggctgcta
gaattcttccctgctgtgctgtgtcactgcatctaataaaccatttcctc
actccaatgtctttggtgaattcattcccagcccgggtccgtcaacccta
tccgcagcgtaacacagccgaaatgtcttcatcgcgtcgctccaactcaa
aattccatgcttcctaatgcctctcaagacaattcatttaaaaaaagtta
ttcggaacattcttgcctctctgtaacacctcttcctcctccttcgctgt
aatttcaccttttagttggtctgttaggagagagcagcggtggaggctgg
tgggtagccgaagctacaggggctttgggaggggtgcgttggcatttaga
ctaggctccgccccatggttacctggcaacagccgggtgtgactgactca
ctataaaaggggctgcttggcctcttcctctctctcctctctctcttgcc
ttcttgctcttgctctgtcctcttgtcccttacccccccccctctccatt
cccctccccctctctctccaagtgctcatgaccagcctctacccttctct
ctctctctctctctctctctctctctctctctatatatatatatatatat
atatatatatagtatatatatatatgtatatatgtctagagatataacag
agagagactacagagacatgggggggggacattttttttctttataaaag
acagaaagggagtcggaatctggtttcttgtatatgtataacagggatta
aacccctaagggctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_109879987_109881150
seq2: B6Ng01-028K04.b_39_1180 (reverse)

seq1  TAGCAAGCCTTTGTTGCAAGGACCGTGATATAGCTGTCCCTTGTGAGACT  50
      |||| |||||||| ||||||   |||||   |||||| |||||||||| |
seq2  TAGC-AGCCTTTG-TGCAAG--ACGTGAATAAGCTGT-CCTTGTGAGA-T  44

seq1  AAGTCAGGGCCTAACAAACACAGAAGTGGATGCTCACAGTCAACTATTGG  100
       ||||||   |||||||  |||| |||||||||| |||||| |||||  |
seq2  TAGTCAG---CTAACAA--ACAGGAGTGGATGCT-ACAGTC-ACTAT--G  85

seq1  ATGGATCACATGGCCCACAATGGAGGAGCTAGAGAAAGTATTCAAGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||| ||  ||||
seq2  ATGGATCACATGGCCCACAATGGAGGAGCTAGAGAAAGTATCCA--GAGC  133

seq1  TAAAGAGATCTACAACCCTATCGGTGGAACAACATTATGAACTAACCAGT  200
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TAAAGAGATCTACA--CCTATCGGTGGAACAACATTATGAACTAACCAGT  181

seq1  ACCCCAGAGCTCTTGACTCTAGCTGCATAGGTATCAAAGATGGCCTAGTC  250
      | |||||||||| |||||||||||||||||||||||||||||||||||||
seq2  A-CCCAGAGCTC-TGACTCTAGCTGCATAGGTATCAAAGATGGCCTAGTC  229

seq1  GGCCATCAATGGAAAGAGAGGCCCATTGGTCAGGCAAACTTTATATGCCC  300
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCCATCAATGGAAAGAGAGG-CCATTGGTCAGGCAAACTTTATATGCCC  278

seq1  CAGTACAGGGGAACGCCAGGGCCAAAAAATGGAAATGGGTGGGTAGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGGGGAACGCCAGGGCCAAAAAATGGAAATGGGTGGGTAGGGGA  328

seq1  GTGGGGGTGGCAGGGTGTGGGGGACTTTTGGGATAGCATTGGAAATGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGTGGCAGGGTGTGGGGGACTTTTGGGATAGCATTGGAAATGTAA  378

seq1  TTGAGGAAAATACGTAAAAAAAAAAATCTATTTCCACATTCCAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAAAATACGTAAAAAAAAAAATCTATTTCCACATTCCAAAAAAAA  428

seq1  AAAAAAAAAGAACACTGTTAAAGGAATGGCACATGGTAAAGAAAGCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGAACACTGTTAAAGGAATGGCACATGGTAAAGAAAGCCTTA  478

seq1  GGGAACTTTGAGAGAGGCTCCAGTGAAAAAGGCAGAGGGCGTTTTACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACTTTGAGAGAGGCTCCAGTGAAAAAGGCAGAGGGCGTTTTACCTC  528

seq1  AAGTGCATCTGTTCCATGTATTGTTCTTGAATGTGCTTTCCTGACTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATCTGTTCCATGTATTGTTCTTGAATGTGCTTTCCTGACTCCTG  578

seq1  TGACAAACATTTACATTCAGTTATAAGACATGTTTATTCTTGATGGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACATTTACATTCAGTTATAAGACATGTTTATTCTTGATGGATGT  628

seq1  TGGAACACAGTTATAGAACCCAATCTGATCAGTGTACTCTGACTCTAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACAGTTATAGAACCCAATCTGATCAGTGTACTCTGACTCTAGAT  678

seq1  ATGGCCTTCTGCTTTGCCTCTGTGCCTCTCTCTCTATAAGCTACAGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTCTGCTTTGCCTCTGTGCCTCTCTCTCTATAAGCTACAGTGTG  728

seq1  TGCCAGGCAATTGTGTTAAAACAGGTCTGTCTTGAAAAAGTTTTGGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGCAATTGTGTTAAAACAGGTCTGTCTTGAAAAAGTTTTGGGAAA  778

seq1  AGGCTTCCTTGTAATATTTACTATGAGCTTACTGATGTCTATTTATATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCTTGTAATATTTACTATGAGCTTACTGATGTCTATTTATATGC  828

seq1  TGTTATTTCATTTTGTTTGTTTGTTTGTCTTTGACCATGCCTTTCTGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTCATTTTGTTTGTTTGTTTGTCTTTGACCATGCCTTTCTGATT  878

seq1  TCAAACAACCTTCTTTGGGTCATTGCTTTCTTTGTCTCATGCATGTATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAACCTTCTTTGGGTCATTGCTTTCTTTGTCTCATGCATGTATAA  928

seq1  CTGAAATGGAAATGAAGTTGTTGTTGGGAGCCGCCCCCACATTCGCCGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGGAAATGAAGTTGTTGTTGGGAGCCGCCCCCACATTCGCCGTT  978

seq1  ACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGC  1028

seq1  GCATGTGCCAAGGGTATCTTATGACTACTTGTGCTCTGCTTTCCCCGTGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGCCAAGGGTATCTTATGACTACTTGTGCTCTGCTTTCCCCGTGA  1078

seq1  CGTCAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTGACACGTCCGAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAACTCGGCCGATGGGCTGCAGCCAATCAAGGAGTGACACGTCCGAG  1128

seq1  GCGAAGGAGAATTC  1164
      ||||||||||||||
seq2  GCGAAGGAGAATTC  1142

seq1: chr11_109714696_109715462
seq2: B6Ng01-028K04.g_67_832

seq1  GAATTCTTCCCTGCTGTGCTGTGTCACTGCATCTAATAAACCATTTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTGCTGTGCTGTGTCACTGCATCTAATAAACCATTTCCTC  50

seq1  ACTCCAATGTCTTTGGTGAATTCATTCCCAGCCCGGGTCCGTCAACCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAATGTCTTTGGTGAATTCATTCCCAGCCCGGGTCCGTCAACCCTA  100

seq1  TCCGCAGCGTAACACAGCCGAAATGTCTTCATCGCGTCGCTCCAACTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAGCGTAACACAGCCGAAATGTCTTCATCGCGTCGCTCCAACTCAA  150

seq1  AATTCCATGCTTCCTAATGCCTCTCAAGACAATTCATTTAAAAAAAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATGCTTCCTAATGCCTCTCAAGACAATTCATTTAAAAAAAGTTA  200

seq1  TTCGGAACATTCTTGCCTCTCTGTAACACCTCTTCCTCCTCCTTCGCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGAACATTCTTGCCTCTCTGTAACACCTCTTCCTCCTCCTTCGCTGT  250

seq1  AATTTCACCTTTTAGTTGGTCTGTTAGGAGAGAGCAGCGGTGGAGGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCACCTTTTAGTTGGTCTGTTAGGAGAGAGCAGCGGTGGAGGCTGG  300

seq1  TGGGTAGCCGAAGCTACAGGGGCTTTGGGAGGGGTGCGTTGGCATTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGCCGAAGCTACAGGGGCTTTGGGAGGGGTGCGTTGGCATTTAGA  350

seq1  CTAGGCTCCGCCCCATGGTTACCTGGCAACAGCCGGGTGTGACTGACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTCCGCCCCATGGTTACCTGGCAACAGCCGGGTGTGACTGACTCA  400

seq1  CTATAAAAGGGGCTGCTTGGCCTCTTCCTCTCTCTCCTCTCTCTCTTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAAGGGGCTGCTTGGCCTCTTCCTCTCTCTCCTCTCTCTCTTGCC  450

seq1  TTCTTGCTCTTGCTCTGTCCTCTTGTCCCTTACCCCCCCCCCTCTCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTCTTGCTCTGTCCTCTTGTCCCTTACCCCCCCCCCTCTCCATT  500

seq1  CCCCTCCCCCTCTCTCTCCAAGTGCTCATGACCAGCCTCTACCCTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCTCTCTCTCCAAGTGCTCATGACCAGCCTCTACCCTTCTCT  550

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGCTT  600
      |||||||||||||||||||||||||||||||| | | | | | |     |
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATAT  600

seq1  CGGAATGCCTCAGCATGGGCCCACAGAGGCA---CTCTCTTCCCCCATAC  647
          ||   | || ||      | | | | |    | |||      ||| 
seq2  ATATATATAT-AGTAT--ATATATATATGTATATATGTCTAGAGATATAA  647

seq1  CTTACCTCACCTCCACCAAACAT-----------ATTTCTTCTCTCCTTA  686
      |  |      || ||  | ||||           |||          || 
seq2  CAGAGAGAGACTACA-GAGACATGGGGGGGGGACATT----------TTT  686

seq1  TTTCTTTATAAAACACAACAGTGGTGTCCGATTCTGGCAGCTGGGCGATG  736
      ||||||||||||| |||  |  || ||| || |||||   || |   |||
seq2  TTTCTTTATAAAAGACAGAAAGGGAGTCGGAATCTGGTTTCTTGTATATG  736

seq1  TTGAACAGGGATTAAACCCCTCAAGGCCTCA  767
      |  |||||||||||||||||| |||| ||||
seq2  TATAACAGGGATTAAACCCCT-AAGGGCTCA  766