BAC Information

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BAC

Clone NameB6Ng01-028M23
Chromosome11 (Build37)
Map Location 58,134,375 - 58,254,236
singlet/doubletdoublet
Overlap geneZfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249, 4930438A08Rik, Zfp692
Downstream gene4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028M23.bB6Ng01-028M23.g
ACCDH859189DH859190
length1,1031,104
definitionDH859189|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M23, 5' end.DH859190|Mus musculus domesticus DNA, BAC clone: B6Ng01-028M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,253,131 - 58,254,236)(58,134,375 - 58,135,478)
sequence
gaattctgggatcttcttccctactctagggattgggactgttttatccc
ctggtctgtttcctgccatgatggttgatagtgattgtcaacttaaatca
ccctgaagacaaatctccgggcttatctgtgaaagtttctatgttgggtc
tgtgagatgggacagtggacacgatcggcagcagttcatgagctggggtc
tgggagtgaacagaggggagagatcaagctgagcatccatgctcctgcct
ctgcttcctgactgtaagtgtgacacaaccagctgcctcaagataggtcg
atctctcagttccaggccagctttatccacacagggagctacagctagcc
agaggcacatagtgagaacctttaaaaaaaaaaaaaaaagattaaaaaaa
ataaaaataaatcttcattagcaatggacagttgcaaattaagagtgtaa
attgttaatactgtaaaaggctgctccctggggtgtgtggctgagggtgt
gagtagggacaagaaagagatcagtctcatgaaatgttccgagtccagaa
agaagaaagaaggagttctcagtcaaccactggtttttatatctcctctg
ttgggtaaaggagtcaccaaaggttgtgggtgtgtttaaatgtgaaggat
catgagagtggcggtccccaaaggatcaaagcaaggctttcattagaaaa
agactcgtcagaacagataagataggcctgagcagagggctcccattgac
acaggaggtatcaaatttaagattatccgtgatggtcacgttcttcaggt
tgcaggcagtcttggtcgcacagcccatggcttgtagcttgatgatgtct
tggttctcttccgttcctgttagtgaaaagacccaagaatcactctttcg
ctctcgtttcatctctcctcctcacccacatccttagaaagtaaacttcc
agaatggttcagaatccacactctcacctctgtgtgagtcatgagcactg
cttcatccatgtagaagctgggcttcttgtcccttggcctactgactctt
ctgtatagaaggaacctttaaatgaaccttgtgtttcagaacacaagaac
taa
gaattcttcctaactctaggaagctaagagatgctgttgtccctgaggtt
ctgtgatcccagaaattaggtagagttcaattacccattcctttctagat
agtatgtgagtagaaagacttatgaccactgtgacatattgaagaaggtg
acaggagtaggagagataactgcctccacctcaagaaccaagtctgatca
tgatccaaatacaaatagaaagttttcattttaaaaagattgtaaaatct
gtgaaggctagaaattagagtgtaggtacaagaaaatacagatagcaaga
gcgtatcctctatccctctgggaaagactgaagtacagaatggctagaaa
tcttggagtagaaagaacatgggagaatagactacaatctttctgggcct
ttcaatgagttggacataacatactctacactgtagggaatgatgtgtaa
ccatgtgccaattaacaatggaatgaaatcctgacaatgtggacttgtca
ttgtgactatcacagaaattacttacataaactcagttatgacattgcca
ggtgattgaatcttaagggatcaccaataaataaacagactaaaatgctg
ctttgtggcgagtggctgtgttagctctttcaaatctgttctctatggat
ccatccaaccatatacattatatatatactttgccctggataactgagtt
gggataagaacctgtggaaagccacacatatgctgaagactctgcagagt
gattagaacttgcttggctatggagacttggactgctgcaaatggagagc
ctaattcatcctgtgtcatctctagtccttgtaatagccatttaccaccc
acctccgcatctgacctaagatccttaagactatagtcatttaggagact
attatcttctactcactcagcagctaagttgctcactagatagcatctaa
cactatagcatgggctggtaaaatgtctctgtgattttaagagagcttgc
tgttctgcaaaggaccaaactttggctgattctcagcatcaattaaggtg
gctccacaaggttgctgtgactgaagctcaggggacccggttgctttctc
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_58253131_58254236
seq2: B6Ng01-028M23.b_41_1144 (reverse)

seq1  TTAG-TCTTGTG-TCTGAGACACAAGGGTCATTTTAAGGTTCCTTCTATA  48
      |||| ||||||| ||||| |||||||| |||||| |||||||||||||||
seq2  TTAGTTCTTGTGTTCTGAAACACAAGGTTCATTTAAAGGTTCCTTCTATA  50

seq1  CAGAAGAGTCAGTAGGGCCAGAGGACAAGAAGGCCCAGCTTCTACATGGA  98
      |||||||||||||| |||||  ||||||||| ||||||||||||||||||
seq2  CAGAAGAGTCAGTA-GGCCAAGGGACAAGAA-GCCCAGCTTCTACATGGA  98

seq1  TGGAGCAGTGCTCATGACCTCACACAGAGGTGGGAGTGGTGGATTCTGGA  148
      || |||||||||||||| |||||||||||||| |||| |||||||||| |
seq2  TGAAGCAGTGCTCATGA-CTCACACAGAGGTGAGAGT-GTGGATTCTGAA  146

seq1  CCATTCTGGAAGTTTACTTTCTAAGGATGTGGGTGAGGAGGAGAGATGAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGGAAGTTTACTTTCTAAGGATGTGGGTGAGGAGGAGAGATGAA  196

seq1  ACGAGAGCGAAAGAGTGATTCTTGGGTCTTTTCACTAACAGGAACGGAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGCGAAAGAGTGATTCTTGGGTCTTTTCACTAACAGGAACGGAAG  246

seq1  AGAACCAAGACATCATCAAGCTACAAGCCATGGGCTGTGCGACCAAGACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCAAGACATCATCAAGCTACAAGCCATGGGCTGTGCGACCAAGACT  296

seq1  GCCTGCAACCTGAAGAACGTGACCATCACGGATAATCTTAAATTTGATAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAACCTGAAGAACGTGACCATCACGGATAATCTTAAATTTGATAC  346

seq1  CTCCTGTGTCAATGGGAGCCCTCTGCTCAGGCCTATCTTATCTGTTCTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTGTCAATGGGAGCCCTCTGCTCAGGCCTATCTTATCTGTTCTGA  396

seq1  CGAGTCTTTTTCTAATGAAAGCCTTGCTTTGATCCTTTGGGGACCGCCAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTTTTTCTAATGAAAGCCTTGCTTTGATCCTTTGGGGACCGCCAC  446

seq1  TCTCATGATCCTTCACATTTAAACACACCCACAACCTTTGGTGACTCCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGATCCTTCACATTTAAACACACCCACAACCTTTGGTGACTCCTT  496

seq1  TACCCAACAGAGGAGATATAAAAACCAGTGGTTGACTGAGAACTCCTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAACAGAGGAGATATAAAAACCAGTGGTTGACTGAGAACTCCTTCT  546

seq1  TTCTTCTTTCTGGACTCGGAACATTTCATGAGACTGATCTCTTTCTTGTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTGGACTCGGAACATTTCATGAGACTGATCTCTTTCTTGTC  596

seq1  CCTACTCACACCCTCAGCCACACACCCCAGGGAGCAGCCTTTTACAGTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCACACCCTCAGCCACACACCCCAGGGAGCAGCCTTTTACAGTAT  646

seq1  TAACAATTTACACTCTTAATTTGCAACTGTCCATTGCTAATGAAGATTTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTTACACTCTTAATTTGCAACTGTCCATTGCTAATGAAGATTTA  696

seq1  TTTTTATTTTTTTTAATCTTTTTTTTTTTTTTTTAAAGGTTCTCACTATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTTTTAATCTTTTTTTTTTTTTTTTAAAGGTTCTCACTATG  746

seq1  TGCCTCTGGCTAGCTGTAGCTCCCTGTGTGGATAAAGCTGGCCTGGAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGGCTAGCTGTAGCTCCCTGTGTGGATAAAGCTGGCCTGGAACT  796

seq1  GAGAGATCGACCTATCTTGAGGCAGCTGGTTGTGTCACACTTACAGTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCGACCTATCTTGAGGCAGCTGGTTGTGTCACACTTACAGTCAG  846

seq1  GAAGCAGAGGCAGGAGCATGGATGCTCAGCTTGATCTCTCCCCTCTGTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGGCAGGAGCATGGATGCTCAGCTTGATCTCTCCCCTCTGTTC  896

seq1  ACTCCCAGACCCCAGCTCATGAACTGCTGCCGATCGTGTCCACTGTCCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGACCCCAGCTCATGAACTGCTGCCGATCGTGTCCACTGTCCCA  946

seq1  TCTCACAGACCCAACATAGAAACTTTCACAGATAAGCCCGGAGATTTGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGACCCAACATAGAAACTTTCACAGATAAGCCCGGAGATTTGTC  996

seq1  TTCAGGGTGATTTAAGTTGACAATCACTATCAACCATCATGGCAGGAAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTGATTTAAGTTGACAATCACTATCAACCATCATGGCAGGAAAC  1046

seq1  AGACCAGGGGATAAAACAGTCCCAATCCCTAGAGTAGGGAAGAAGATCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGGGATAAAACAGTCCCAATCCCTAGAGTAGGGAAGAAGATCCC  1096

seq1  AGAATTCC  1106
      ||||||||
seq2  AGAATTCC  1104

seq1: chr11_58134375_58135478
seq2: B6Ng01-028M23.g_67_1170

seq1  GAATTCTTCCTAACTCTAGGAAGCTAAGAGATGCTGTTGTCCCTGAGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTAACTCTAGGAAGCTAAGAGATGCTGTTGTCCCTGAGGTT  50

seq1  CTGTGATCCCAGAAATTAGGTAGAGTTCAATTACCCATTCCTTTCTAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATCCCAGAAATTAGGTAGAGTTCAATTACCCATTCCTTTCTAGAT  100

seq1  AGTATGTGAGTAGAAAGACTTATGACCACTGTGACATATTGAAGAAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTGAGTAGAAAGACTTATGACCACTGTGACATATTGAAGAAGGTG  150

seq1  ACAGGAGTAGGAGAGATAACTGCCTCCACCTCAAGAACCAAGTCTGATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTAGGAGAGATAACTGCCTCCACCTCAAGAACCAAGTCTGATCA  200

seq1  TGATCCAAATACAAATAGAAAGTTTTCATTTTAAAAAGATTGTAAAATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCAAATACAAATAGAAAGTTTTCATTTTAAAAAGATTGTAAAATCT  250

seq1  GTGAAGGCTAGAAATTAGAGTGTAGGTACAAGAAAATACAGATAGCAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCTAGAAATTAGAGTGTAGGTACAAGAAAATACAGATAGCAAGA  300

seq1  GCGTATCCTCTATCCCTCTGGGAAAGACTGAAGTACAGAATGGCTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTATCCTCTATCCCTCTGGGAAAGACTGAAGTACAGAATGGCTAGAAA  350

seq1  TCTTGGAGTAGAAAGAACATGGGAGAATAGACTACAATCTTTCTGGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGTAGAAAGAACATGGGAGAATAGACTACAATCTTTCTGGGCCT  400

seq1  TTCAATGAGTTGGACATAACATACTCTACACTGTAGGGAATGATGTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGAGTTGGACATAACATACTCTACACTGTAGGGAATGATGTGTAA  450

seq1  CCATGTGCCAATTAACAATGGAATGAAATCCTGACAATGTGGACTTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCCAATTAACAATGGAATGAAATCCTGACAATGTGGACTTGTCA  500

seq1  TTGTGACTATCACAGAAATTACTTACATAAACTCAGTTATGACATTGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACTATCACAGAAATTACTTACATAAACTCAGTTATGACATTGCCA  550

seq1  GGTGATTGAATCTTAAGGGATCACCAATAAATAAACAGACTAAAATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTGAATCTTAAGGGATCACCAATAAATAAACAGACTAAAATGCTG  600

seq1  CTTTGTGGCGAGTGGCTGTGTTAGCTCTTTCAAATCTGTTCTCTATGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGCGAGTGGCTGTGTTAGCTCTTTCAAATCTGTTCTCTATGGAT  650

seq1  CCATCCAACCATATACATTATATATATACTTTGCCCTGGATAACTGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAACCATATACATTATATATATACTTTGCCCTGGATAACTGAGTT  700

seq1  GGGATAAGAACCTGTGGAAAGCCACACATATGCTGAAGACTCTGCAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAAGAACCTGTGGAAAGCCACACATATGCTGAAGACTCTGCAGAGT  750

seq1  GATTAGAACTTGCTTGGCTATGGAGACTTGGACTGCTGCAAATGGAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGAACTTGCTTGGCTATGGAGACTTGGACTGCTGCAAATGGAGAGC  800

seq1  CTAATTCATCCTGTGTCATCTCTAGTCCTTGTAATAGCCATTTACCACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCATCCTGTGTCATCTCTAGTCCTTGTAATAGCCATTTACCACCC  850

seq1  ACCTCCGCATCTGACCTAAGATCCTTAAGACTATAGTCATTTAGGAGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCGCATCTGACCTAAGATCCTTAAGACTATAGTCATTTAGGAGACT  900

seq1  ATTATCTTCTACTCACTCAGCAGCTAAGTTGCTCACTAGATAGCATCTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTCTACTCACTCAGCAGCTAAGTTGCTCACTAGATAGCATCTAA  950

seq1  CACCTATAGCATGGGCTGGTAAGATGTCTCTGTGATTTTAAGAGAGCTTG  1000
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CA-CTATAGCATGGGCTGGTAAAATGTCTCTGTGATTTTAAGAGAGCTTG  999

seq1  CTGTTCTTGCAAAGGACCAAACTTTGGCTGATTCTCAGCATCAATGTAGG  1050
      |||||| |||||||||||||||||||||||||||||||||||||| || |
seq2  CTGTTC-TGCAAAGGACCAAACTTTGGCTGATTCTCAGCATCAAT-TAAG  1047

seq1  GTGGCT-CACAA-GTGCCTGTGACTGAAGCTCCAGGGGA-CCTGTTGCTT  1097
      |||||| ||||| ||  |||||||||||||| ||||||| || |||||||
seq2  GTGGCTCCACAAGGTTGCTGTGACTGAAGCT-CAGGGGACCCGGTTGCTT  1096

seq1  TCT-TCTG  1104
      ||| ||||
seq2  TCTCTCTG  1104