BAC Information

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BAC

Clone NameB6Ng01-029A06
Chromosome11 (Build37)1 (Build37)
Map Location 115,595,231 - 115,596,205189,162,753 - 189,162,912
singlet/doubletsingletsinglet
Overlap geneLOC100043184
Upstream geneDnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2
Downstream gene2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029A06.bB6Ng01-029A06.g
ACCDH859334DH859335
length960301
definitionDH859334|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A06, 5' end.DH859335|Mus musculus domesticus DNA, BAC clone: B6Ng01-029A06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,595,231 - 115,596,205)(189,162,753 - 189,162,912)
sequence
gaattctctgtgattattggaaaaaaagatttccgcttgggaaaagattc
agaacataccacattaaatcactgagttttaaaacaaatcaactctggaa
ggaaattactgttgaagagcactggatcactggataggattattttccca
aaccctctgctctaagccgggcctggggtacaggcctgtaatctcagcta
tttgtagggctgaattaggaagatcccgagttcacgggtggcttgggcta
cacatcgggttccaggccagcccgggcaaattaaagagatgctgcctcaa
aaaaaaaccgtaaaaagccatttgcagttataactctgtggcacgggact
tgacgaccatccccaacgccatggcttccgccccctgtaccaggaacaca
aagacacaaacaaggtgccaggccaagcatatggctgagtggtctgataa
taaaagcagctgcctgtgccgtcctcttgggccctaagtatagggagtat
tttgacagtggatttactttgctgccagactggatgaaatttttccagct
ataataagacacatgggctcagaccgcaatatgattcagaagcaggaatc
atgacttctgaaacaaagagcccctctccgggagactcctggcgtcatct
ttcatgattggtgtcagggaggggccaaggccagcttgcatatctgaact
ctggactgacgctcatacccagcattctctgctcgtgcagaccacattgc
cagcattctcctccctatacgttctcttcttgtctcctgaacacggatac
ttgaggccacataccggctccctcacctgcttcggagacctctctagcct
caggggactataattgaaactttgatgaagacccaaggttctcacctggc
tgtctggctctgtttctgatgggaaatgcagttctctcagatattaaagc
gcatgtgtgt
gaattcctggacagctaaagtgatgttgaaagatcctgtgtcattttttt
tgtcttttctttccttccttccttccttccttccttactgcccttcaacc
tggcctgcctggccacctgctctctcccagaccttctctccgccttgctg
tagacaggggctgttacttgttccttctgttctttatgcttgagagtgta
gccccccaccccataggagtgtcccgcctaaattggagctctgctgctaa
agagactccaaaggtatacctttccattgaagaaagagaccctacgagga
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_115595231_115596205
seq2: B6Ng01-029A06.b_44_1003 (reverse)

seq1  ACACACATGCGCTTTTTAAAAATCTCAAAGAACTGCATTCTGCCCAGCAG  50
      |||||||||||||||   || |||| | ||||||||||  | |||| |||
seq2  ACACACATGCGCTTT---AATATCTGAGAGAACTGCAT--TTCCCATCAG  45

seq1  AAACCGACCCAGACAGCCACGGAAGGGACCCTTGGGTTCTTTCCAT-AAG  99
      |||| || |||||||||||  |  | || ||||||| ||||  ||| || 
seq2  AAACAGAGCCAGACAGCCA--GGTGAGAACCTTGGG-TCTT--CATCAAA  90

seq1  GTTTCCAATTATTATCCCCTCTACCCTCTCCTTGGGACCCTGAAGCAGCT  149
      |||| |||||||  ||||||       ||     || | | ||||||| |
seq2  GTTT-CAATTATAGTCCCCT---GAGGCTAGAGAGGTCTCCGAAGCAGGT  136

seq1  GAAGGAGCCGCTATGTGACCTCAAGTATCTGTGTCCAGGAGGCAAGAAGA  199
      || ||||||| |||||| ||||||||||| |||| |||||| ||||||||
seq2  GAGGGAGCCGGTATGTGGCCTCAAGTATCCGTGTTCAGGAGACAAGAAGA  186

seq1  GAACCTAAAGGGAGGAGAATGCTGACAATGTGGGCTGGGCGAGCAGAGAA  249
      |||| || |||||||||||||||| |||||||| |||  |||||||||||
seq2  GAACGTATAGGGAGGAGAATGCTGGCAATGTGGTCTGCACGAGCAGAGAA  236

seq1  TGCTGGGAATGAGCGGCAGTCCAGAGTTCAGATCTGCAAGCTTGCCTTGG  299
      ||||||| ||||||| ||||||||||||||||| |||||||| |||||||
seq2  TGCTGGGTATGAGCGTCAGTCCAGAGTTCAGATATGCAAGCTGGCCTTGG  286

seq1  CCCCTCCCTGACACCCTTCATGAAAGATGACGCCAGGAGTCTCCCGGAGA  349
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CCCCTCCCTGACACCAATCATGAAAGATGACGCCAGGAGTCTCCCGGAGA  336

seq1  GGGGCTCTTTGCTTCAGGAGTTATGATTCCTGCTTCTGAATCATATTGCT  399
      ||||||||||| ||||| ||| ||||||||||||||||||||||||||| 
seq2  GGGGCTCTTTGTTTCAGAAGTCATGATTCCTGCTTCTGAATCATATTGC-  385

seq1  TTTCTGAGCCCATGTGTCTTATTATAGCTGGAAAGATTTCATCCAGTCTG  449
        |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGTCTGAGCCCATGTGTCTTATTATAGCTGGAAAAATTTCATCCAGTCTG  435

seq1  GCAGCAAAGTAAATCCACTGTCAAAATACTCCCTATACTTAGGGCCCAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAAGTAAATCCACTGTCAAAATACTCCCTATACTTAGGGCCCAAG  485

seq1  AGGACGGCACAGGCAGCTGCTTTTATTATCAGACCACTCAGCCATATGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGGCACAGGCAGCTGCTTTTATTATCAGACCACTCAGCCATATGCT  535

seq1  TGGCCTGGCACCTTGTTTGTGTCTTTGTGTTCCTGGTACAGGGGGTGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGCCTGGCACCTTGTTTGTGTCTTTGTGTTCCTGGTACAGGGGGCGGAA  585

seq1  GCCATGGCCTTGGGGATGGTTGCCAAGTCCCCTGCCACCGAGTTATAACT  649
      |||||||| ||||||||||| | |||||||| |||||| |||||||||||
seq2  GCCATGGCGTTGGGGATGGTCGTCAAGTCCCGTGCCACAGAGTTATAACT  635

seq1  GCAAATGGCTTTTTACGGTTTATTTTTGAGGCAGCATCTCTTTAATTTGC  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAAATGGCTTTTTACGGTTTTTTTTTGAGGCAGCATCTCTTTAATTTGC  685

seq1  CCGGGCTGGCCTGGAACCCGCTCTGTAGCCCAAGCCAACCGTGAACTTGG  749
      |||||||||||||||||||| | |||||||||||||| ||||||||| ||
seq2  CCGGGCTGGCCTGGAACCCGATGTGTAGCCCAAGCCACCCGTGAACTCGG  735

seq1  GATCTTCCTACTTCAGCCCTACAAATAGCTGAGATTACAGGCCTGTACCC  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCTAATTCAGCCCTACAAATAGCTGAGATTACAGGCCTGTACCC  785

seq1  CAGGCCCGGCTTAGAGCAGAGTGTTTGGGAAAATAATCCTATCCAGTGCT  849
      ||||||||||||||||||||| |||||||||||||||||||||||||| |
seq2  CAGGCCCGGCTTAGAGCAGAGGGTTTGGGAAAATAATCCTATCCAGTGAT  835

seq1  CCAGTGCTCTTCAACAGTAATTTCCTTCCAGAGTTGATTTGTTTTTAAAA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCAGTGCTCTTCAACAGTAATTTCCTTCCAGAGTTGATTTG-TTTTAAAA  884

seq1  CTCAGTGATTTAATGTGGTATGTTGTGAATCTTTTCCCAAGCGGAAATCT  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCAGTGATTTAATGTGGTATGTTCTGAATCTTTTCCCAAGCGGAAATCT  934

seq1  TTTTTTCCAATAATCACAGAGAATTC  975
      ||||||||||||||||||||||||||
seq2  TTTTTTCCAATAATCACAGAGAATTC  960

seq1: chr1_189162753_189162912
seq2: B6Ng01-029A06.g_195_353

seq1  AGACCTTCACTCCGCCTTGCTGTAGACAGGGGCTGTTACTTGTTCCTTCT  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCTCTCCGCCTTGCTGTAGACAGGGGCTGTTACTTGTTCCTTCT  50

seq1  GTTCTTTATACTTGAGAGCCTCTCCCCCCACCCCATAGGAGTGTCCCAGG  100
      ||||||||| ||||||||  |  ||||||||||||||||||||||||   
seq2  GTTCTTTATGCTTGAGAGTGTAGCCCCCCACCCCATAGGAGTGTCCCGCC  100

seq1  GGAATTGGAGCTCAATGGCTTAAAGAGACTCCAAAGGTATACCTTTCCAT  150
        |||||||||||    || ||||||||||||||||||||||||||||||
seq2  TAAATTGGAGCTCTGCTGC-TAAAGAGACTCCAAAGGTATACCTTTCCAT  149

seq1  TGAAGAAAGA  160
      ||||||||||
seq2  TGAAGAAAGA  159