BAC Information

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BAC

Clone NameB6Ng01-029C07
Chromosome11 (Build37)
Map Location 50,798,235 - 50,799,393
singlet/doubletsinglet
Overlap geneOlfr1377
Upstream geneRnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1, Adamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378
Downstream geneOlfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029C07.bB6Ng01-029C07.g
ACCDH859427DH859428
length1,136658
definitionDH859427|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C07, 5' end.DH859428|Mus musculus domesticus DNA, BAC clone: B6Ng01-029C07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctccttctggggctctctggaaagtcagagcaggaggaagtcgt
ctttggaatgttcttaggcatgtacttggtcaccatctctgggaaccttc
tcatcatcctggccatcagctgtgaccctcatctccacacacccatgtac
ttcttcttggccaacctctccagtgttgacatctgcttttcctcagtcac
tgtccccaaggctctggtgaaccacgtgttgggaagcaagtccatctctt
acacagagtgcatgatccagatctatttcttcatcacattcatcaacatg
gatggcttcctcctgagtgtgatggcctatgaccgctatgtggccatctg
tcaccctctccactacaccatgatgatgagatccagactctgtgtcctcc
tggtggccatatcatgggtcatcacaaacctgcatgctctcttgcatact
ctcctcatggttcgactcaccttctgttcccacaatgcagtgcaccactt
cttctgcgacccctaccctatcctgaagctctcttgttctgacaccttca
tcaatgacctgatggtcttcactgtgggtggagtgatattcctgacaccg
ttttcatgcattgttgtttcctatgtttacatcttctctaaggtcctgaa
gataccatctgcccgcgggataaggaaagccctgtctacatgtgggtctc
acctcactgtggtctccctcttctatggggcgatcctgggtgtctacatg
cgtccttcatcctcatattctctgcaggacacggtggctactgtcatctt
tacagtggtgactccattggtcaatcccttcatctacagcctgaggaatc
aggatatgaaaggagccctaaggaagataatgctcagatcctagtacctg
agaggattctggacatcatgcacttgttcatcttctggaaaactgatgca
tagattggtatagaatcgagcacagctttcctggactataccaaatgctt
gtgttgaatttatttcaagatgcagatgctcgtttcataaaagcgggatt
tgccatctctgaaaggacttattctgaggagctcatttcccgacaagaac
ctcggaaactagttggatgttaaggtctcctccagc
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
atatctgatttgggatgggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgcctttcagaagctttgcaatttta
tgaggtcccatttatcgattctttgtcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtacccatatcttcgaggcttttccctac
tttcttctttataagtttcagtgtctctggttttatgtggagtttcctgt
atttctttaagtgagttattaaagtccttcttgatgtcctctaccatcat
caggagatatgcttttaaatccgggtctagcttttaggttgtgttggggt
gcccaggactgggtgaggtgggagtgctgtgttttgatgatggtgagtgg
tcttggtttctgttagtaagattcttacgtttgcctttcaccatctggta
atctctggagttagttgttatagttgtctctggttagagcttgttcctct
tgtgattctgttagtctctatcagcagacctgagagacttgctctctcct
gagtttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_50798235_50799393
seq2: B6Ng01-029C07.b_46_1181

seq1  GAATTCCTCCTTCTGGGGCTCTCTGGAAAGTCAGAGCAGGAGGAAGTCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTCTGGGGCTCTCTGGAAAGTCAGAGCAGGAGGAAGTCGT  50

seq1  CTTTGGAATGTTCTTAGGCATGTACTTGGTCACCATCTCTGGGAACCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAATGTTCTTAGGCATGTACTTGGTCACCATCTCTGGGAACCTTC  100

seq1  TCATCATCCTGGCCATCAGCTGTGACCCTCATCTCCACACACCCATGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCATCCTGGCCATCAGCTGTGACCCTCATCTCCACACACCCATGTAC  150

seq1  TTCTTCTTGGCCAACCTCTCCAGTGTTGACATCTGCTTTTCCTCAGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGGCCAACCTCTCCAGTGTTGACATCTGCTTTTCCTCAGTCAC  200

seq1  TGTCCCCAAGGCTCTGGTGAACCACGTGTTGGGAAGCAAGTCCATCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAAGGCTCTGGTGAACCACGTGTTGGGAAGCAAGTCCATCTCTT  250

seq1  ACACAGAGTGCATGATCCAGATCTATTTCTTCATCACATTCATCAACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGTGCATGATCCAGATCTATTTCTTCATCACATTCATCAACATG  300

seq1  GATGGCTTCCTCCTGAGTGTGATGGCCTATGACCGCTATGTGGCCATCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTTCCTCCTGAGTGTGATGGCCTATGACCGCTATGTGGCCATCTG  350

seq1  TCACCCTCTCCACTACACCATGATGATGAGATCCAGACTCTGTGTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCTCCACTACACCATGATGATGAGATCCAGACTCTGTGTCCTCC  400

seq1  TGGTGGCCATATCATGGGTCATCACAAACCTGCATGCTCTCTTGCATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCATATCATGGGTCATCACAAACCTGCATGCTCTCTTGCATACT  450

seq1  CTCCTCATGGTTCGACTCACCTTCTGTTCCCACAATGCAGTGCACCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCATGGTTCGACTCACCTTCTGTTCCCACAATGCAGTGCACCACTT  500

seq1  CTTCTGCGACCCCTACCCTATCCTGAAGCTCTCTTGTTCTGACACCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCGACCCCTACCCTATCCTGAAGCTCTCTTGTTCTGACACCTTCA  550

seq1  TCAATGACCTGATGGTCTTCACTGTGGGTGGAGTGATATTCCTGACACCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACCTGATGGTCTTCACTGTGGGTGGAGTGATATTCCTGACACCG  600

seq1  TTTTCATGCATTGTTGTTTCCTATGTTTACATCTTCTCTAAGGTCCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGCATTGTTGTTTCCTATGTTTACATCTTCTCTAAGGTCCTGAA  650

seq1  GATACCATCTGCCCGCGGGATAAGGAAAGCCCTGTCTACATGTGGGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCATCTGCCCGCGGGATAAGGAAAGCCCTGTCTACATGTGGGTCTC  700

seq1  ACCTCACTGTGGTCTCCCTCTTCTATGGGGCGATCCTGGGTGTCTACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTGTGGTCTCCCTCTTCTATGGGGCGATCCTGGGTGTCTACATG  750

seq1  CGTCCTTCATCCTCATATTCTCTGCAGGACACGGTGGCTACTGTCATCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTCATCCTCATATTCTCTGCAGGACACGGTGGCTACTGTCATCTT  800

seq1  TACAGTGGTGACTCCATTGGTCAATCCCTTCATCTACAGCCTGAGGAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGTGACTCCATTGGTCAATCCCTTCATCTACAGCCTGAGGAATC  850

seq1  AGGATATGAAAGGAGCCCTAAGGAAGATAATGCTCAGATCCTAGTACCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATGAAAGGAGCCCTAAGGAAGATAATGCTCAGATCCTAGTACCTG  900

seq1  AGAGGATTCCTGGACATCATGCACTTGTTCATCTTTCTGGAAAAACTGAT  950
      |||||||| |||||||||||||||||||||||| |||||| |||||||||
seq2  AGAGGATT-CTGGACATCATGCACTTGTTCATC-TTCTGG-AAAACTGAT  947

seq1  GCATAGATTGGTATAGAATTCGAGCACAGCTTTCCTGGGACTAATACCAA  1000
      |||||||||||||||||| ||||||||||||||||| ||||| |||||||
seq2  GCATAGATTGGTATAGAA-TCGAGCACAGCTTTCCT-GGACT-ATACCAA  994

seq1  ATGCTTGTGGTTGTATTTTATTTCAAGATGGCAGATGCTCGTTTTCATAA  1050
      |||||||| |||| | ||||||||||||| ||||||||||| ||||||||
seq2  ATGCTTGT-GTTG-AATTTATTTCAAGAT-GCAGATGCTCG-TTTCATAA  1040

seq1  AAGCGGGGATTTGCCATCTCTGAAAGGGACTTATTCTGAGGAGCTCATTT  1100
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGC-GGGATTTGCCATCTCTGAAA-GGACTTATTCTGAGGAGCTCATTT  1088

seq1  CACAGACAAGAAACTCTGGGATAACTAGTTGTAATTGGTTTAAGGTGCTC  1150
      | | |||||||| |||  ||| ||||||||| |  ||  ||||||| |||
seq2  C-CCGACAAGAACCTC--GGA-AACTAGTTGGA--TG--TTAAGGT-CTC  1129

seq1  CTGCCCAGC  1159
      ||  |||||
seq2  CT--CCAGC  1136