BAC Information

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BAC

Clone NameB6Ng01-029E20
Chromosome11 (Build37)
Map Location 36,352,119 - 36,482,430
singlet/doubletdoublet
Overlap geneOdz2
Upstream geneSlit3, Pank3, LOC666733, AI595406, Rars, Wwc1, LOC636532
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029E20.bB6Ng01-029E20.g
ACCDH859543DH859544
length1,15062
definitionDH859543|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E20, 5' end.DH859544|Mus musculus domesticus DNA, BAC clone: B6Ng01-029E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,481,231 - 36,482,430)(36,352,119 - 36,352,180)
sequence
gaattctaattatgtagcatagcccttactctgccctgagtccaggcatt
cttaagaagttatgatgtagtctgaaattagaagttattttatgctccat
ttccaggtatataaaaaacaatggaaaacagagagaaggctgaaccacct
gagccttaagaggcacctctcaatttacatgcttcctgtgctcaagaaga
aatattttaaaaaattacagcacctatgatttgggaaagatcttcctata
aaatgatctactccaaactaaaaacaaatctgactttaagaaaaatccag
gcaggagagtctggattctctatcacaccctctggggatgcaggtcacaa
tccaaagatctaatcagtttgtctgagagtcgctgttctgagattcctgt
acatcattcactcacgtgaagaacacaagggttgtgttgtgatcttgcct
ggtattaaagggacacttgtacaaaatgtgcatgtagaggatgggttcca
aggtaaaagattgacatattacttccaaagggagtgggtttgtataatcg
gggtcttttcactcccagtctgcatggtgtctgtgagggatagatatgtt
gtatatgttcacagtcacacgtggtatgtgatttatatacacacccatgt
agtctctagaggtcagtagaatataagaaatgggcaaacattcatgttga
gatgagatacacagactccagaaaccatttttcaaatggcaaaaaaaaaa
aaaaaaaaaaagatgatagtcgactaatgacactagaaactgaagtcatt
aatcggtgttaacaaaaaagtcgtgtcattcttgttcatgaatgaatcta
atctatttgttttaagcaaatttcagataaatgaacattttacatggcaa
gaaccttgatggaaactcaagctctaatactttatatgcctcattataac
agactgtgaatcactgtcttacttttaaaaaaaaatgtactagacagagg
gtaaattgtttaaacatgatggtacaccccaatactgttctactcgggct
gcgtgtcagtcccttgattggcaatgatgatgacggtcaatgctacgtct
ttgctggtctggactaagtgacggataggagtgtgatgttcttgagccta

actgtgtatttgtggttgcatgtgtatacaggtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_36481231_36482430
seq2: B6Ng01-029E20.b_42_1191 (reverse)

seq1  TAGGCTCACAGAGAAAACAAATCACACACTCCTAATACCCTGTCCAACTT  50
      ||||||||     | ||||     ||||||||||        |||  |  
seq2  TAGGCTCA-----AGAACA----TCACACTCCTA--------TCCGTCAC  33

seq1  TTAGTTCACAAGAACAGACAAAGACGTAGCATATGAACCGTCCAATCATT  100
      |||||   | ||| ||| |||||||||||||| || ||||||  |||| |
seq2  TTAGT---CCAGACCAG-CAAAGACGTAGCAT-TG-ACCGTC--ATCA-T  74

seq1  CATTTGTCAAATCAAGGGGACTGACACGGCAGCTCGAGTAGAAACAGTAT  150
      ||||   | |||||| ||||||||||| ||||| ||||||| ||||||| 
seq2  CATT--GCCAATCAA-GGGACTGACAC-GCAGCCCGAGTAG-AACAGTA-  118

seq1  TTGGGGTGTAACCATCAATGTTTAAAAACAATTTACCCTTCTGTTCTAGT  200
      ||||||||| |||||| ||||||  ||||||||||||| |||| ||||||
seq2  TTGGGGTGT-ACCATC-ATGTTT--AAACAATTTACCC-TCTG-TCTAGT  162

seq1  AACATTTTTTTTTTTAAAAAGTTAAGACAAGTGATTCACAGTCTGTTATA  250
       ||||||||||||   ||||| |||||| |||||||||||||||||||||
seq2  -ACATTTTTTTTT---AAAAG-TAAGAC-AGTGATTCACAGTCTGTTATA  206

seq1  ATGAGGCATAATAAAGTAATTAGAGCTTGAGTTTCCATCAAGGTTCTTGC  300
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  ATGAGGCAT-ATAAAGT-ATTAGAGCTTGAGTTTCCATCAAGGTTCTTGC  254

seq1  CATGTAAAATGTTCATTTATCTGAAATTTGCTTAAAACAAATAGATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAATGTTCATTTATCTGAAATTTGCTTAAAACAAATAGATTAGA  304

seq1  TTCATTTCATGAACAAGAATGACACGACTTTTTTGTTAACACCGATTAAT  400
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCA-TTCATGAACAAGAATGACACGACTTTTTTGTTAACACCGATTAAT  353

seq1  GACTTCAGTTTCTAGTGTCATTAGTCGACTATCATCTTTTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  GACTTCAGTTTCTAGTGTCATTAGTCGACTATCATC---TTTTTTTTTTT  400

seq1  TTTTTTTTTTGCCATTTGAAAAATGGTTTCTGGAGTCTGTGTATCTCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGCCATTTGAAAAATGGTTTCTGGAGTCTGTGTATCTCATC  450

seq1  TCAACATGAATGTTTGCCCATTTCTTATATTCTACTGACCTCTAGAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATGAATGTTTGCCCATTTCTTATATTCTACTGACCTCTAGAGACT  500

seq1  ACATGGGTGTGTATATAAATCACATACCACGTGTGACTGTGAACATATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGGTGTGTATATAAATCACATACCACGTGTGACTGTGAACATATAC  550

seq1  AACATATCTATCCCTCACAGACACCATGCAGACTGGGAGTGAAAAGACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATCTATCCCTCACAGACACCATGCAGACTGGGAGTGAAAAGACCC  600

seq1  CGATTATACAAACCCACTCCCTTTGGAAGTAATATGTCAATCTTTTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTATACAAACCCACTCCCTTTGGAAGTAATATGTCAATCTTTTACCT  650

seq1  TGGAACCCATCCTCTACATGCACATTTTGTACAAGTGTCCCTTTAATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCCATCCTCTACATGCACATTTTGTACAAGTGTCCCTTTAATACC  700

seq1  AGGCAAGATCACAACACAACCCTTGTGTTCTTCACGTGAGTGAATGATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGATCACAACACAACCCTTGTGTTCTTCACGTGAGTGAATGATGT  750

seq1  ACAGGAATCTCAGAACAGCGACTCTCAGACAAACTGATTAGATCTTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATCTCAGAACAGCGACTCTCAGACAAACTGATTAGATCTTTGGA  800

seq1  TTGTGACCTGCATCCCCAGAGGGTGTGATAGAGAATCCAGACTCTCCTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACCTGCATCCCCAGAGGGTGTGATAGAGAATCCAGACTCTCCTGC  850

seq1  CTGGATTTTTCTTAAAGTCAGATTTGTTTTTAGTTTGGAGTAGATCATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTTTCTTAAAGTCAGATTTGTTTTTAGTTTGGAGTAGATCATTT  900

seq1  TATAGGAAGATCTTTCCCAAATCATAGGTGCTGTAATTTTTTAAAATATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGAAGATCTTTCCCAAATCATAGGTGCTGTAATTTTTTAAAATATT  950

seq1  TCTTCTTGAGCACAGGAAGCATGTAAATTGAGAGGTGCCTCTTAAGGCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGAGCACAGGAAGCATGTAAATTGAGAGGTGCCTCTTAAGGCTC  1000

seq1  AGGTGGTTCAGCCTTCTCTCTGTTTTCCATTGTTTTTTATATACCTGGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTCAGCCTTCTCTCTGTTTTCCATTGTTTTTTATATACCTGGAA  1050

seq1  ATGGAGCATAAAATAACTTCTAATTTCAGACTACATCATAACTTCTTAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCATAAAATAACTTCTAATTTCAGACTACATCATAACTTCTTAAG  1100

seq1  AATGCCTGGACTCAGGGCAGAGTAAGGGCTATGCTACATAATTAGAATTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGGACTCAGGGCAGAGTAAGGGCTATGCTACATAATTAGAATTC  1150

seq1: chr11_36352119_36352180
seq2: B6Ng01-029E20.g_70_131

seq1  ACTGTGTATTTGTGGTTGCATGTGTATACAGGTGTGTGTGTGTGTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTATTTGTGGTTGCATGTGTATACAGGTGTGTGTGTGTGTGTGTG  50

seq1  TGTGTGTGTGTG  62
      ||||||||||||
seq2  TGTGTGTGTGTG  62