BAC Information

Click to search

BAC

Clone NameB6Ng01-029H04
Chromosome11 (Build37)
Map Location 88,373,569 - 88,564,832
singlet/doubletdoublet
Overlap geneMsi2, LOC100038945
Upstream geneSept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneAkap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029H04.bB6Ng01-029H04.g
ACCDH859648DH859649
length1,131897
definitionDH859648|Mus musculus domesticus DNA, BAC clone: B6Ng01-029H04, 5' end.DH859649|Mus musculus domesticus DNA, BAC clone: B6Ng01-029H04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,373,569 - 88,374,712)(88,563,934 - 88,564,832)
sequence
gaattctctcctttcaccaaacaggttaagagaattgaactcagactgcc
aggcttggtagcaggcacctttatccacttgagtcatctcacaggtataa
ataagtacaaataacacttttaaaaaactagggcctaatcccaatccagc
gtaccacttattaactagctgccgttgcaaaaactctactttcaaactta
ttttattctacacaaaataaattctgtacttaaaaaaaaaattataccac
ccaaataatttgctgagaaaggagataggaaaacccaccattgtgacaca
aagcgacaagtgtgcagatgaataggatgctgaagaagaggtggtggcta
agtgtgactagctctacagatggacgctggggatgtccacagatgatgct
tggttgggggcaagggaaacccaacccatgctggcaaagtctatgaacca
ggcaggggtaggccaccatagacagtgggaaaaaccactggcctcagaat
tcatgttcccggtttacaaaccggtttccccatgatactagtttccacat
gctgtcctgtgagcacagcgcctggtaccttcaaacactccaaccctgtt
gtctcgttttttctagaattaatgtcagtgaacaatgtgtttctgggatc
gtatccttctgaagactccaggagaaccttcatggtgcctctctctttcc
tactgtctactgctggtcagccctctgcggtgagcggatcactagcaggc
ttcacagagcattcctgcccacaggaggtctctcagcccaatttccatcc
tctgataaagctacgagtcactgcgacagggcttgccccagcccagcaca
acctcactaattatatctgcaaagaccctatgtcctaacaaagcttcttt
ctgaagttccagtggacatggactgggggacgtgccaccacttcagccag
aacgccaccaactcagcagcacttcacggcagtcacttacatgtccaaga
aacccttctgctcaacatggcctcaaattcttccctggagcaaggcttta
gcagcactgactcggacgcccctctaaaacggggacttcgcctgggctaa
ggtccaggagcctgggagatttgtgtgtcag
gaattcatttccttctctgtgttggatgcctgtgggtttttttttctctc
cctgcctttgagagtaaagtcctgggctgtagctagggaagagctgagac
cccactgggagaggtctcctctagagccttctctctcccggggctggtct
ttatctgcctgggggtagtttcaccaatgactgatctgaaagcaccacat
tcatttatctgtcactggctgtgacaggcaagttaatgctaatggattct
ttttttagcctgttgtctgggatgtttctcccaaatgtcctgaaatctat
ggcattaggggaatgtgtaacttttatggtaggggaggatttaaaagata
aatagggttttgtgtgcaaggggctagcatttaggttaggggcaagagcg
gccagctgagggatgtggggcgagcacagagtcgtctttttaagaaatcc
attcagaactccaaattgctgtttctgtttcaattatgtgacaatttcaa
gggtttagaaaaatctaataaaatggtcttgacgatgaattctggggaga
gtgctttagaaggttctggagaataaattcattgggggtcaagagactgt
cgttcccgccaccctccaagcctgcttcatctgggtttttacatttttat
tgttttgaagggcaggaaaacggtgtaggaatgcattcagggcttcaccc
atagcctccacagaaatgaattattctctttgggcaattgcagacacacg
gacactgcgctctttcttttctttttcttttcttttcttttttttttttt
ttacccaaagatgacatcccgtaacgactttcagagcatgattttgtgtg
tgcgttatgttgaaaaagcaccaaaaaaaagccactggaggaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88373569_88374712
seq2: B6Ng01-029H04.b_44_1174

seq1  GAATTCTCTCCTTTCACCAAACAGGTTAAGAGAATTGAACTCAGACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCTTTCACCAAACAGGTTAAGAGAATTGAACTCAGACTGCC  50

seq1  AGGCTTGGTAGCAGGCACCTTTATCCACTTGAGTCATCTCACAGGTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGGTAGCAGGCACCTTTATCCACTTGAGTCATCTCACAGGTATAA  100

seq1  ATAAGTACAAATAACACTTTTAAAAAACTAGGGCCTAATCCCAATCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACAAATAACACTTTTAAAAAACTAGGGCCTAATCCCAATCCAGC  150

seq1  GTACCACTTATTAACTAGCTGCCGTTGCAAAAACTCTACTTTCAAACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACTTATTAACTAGCTGCCGTTGCAAAAACTCTACTTTCAAACTTA  200

seq1  TTTTATTCTACACAAAATAAATTCTGTACTTAAAAAAAAAATTATACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCTACACAAAATAAATTCTGTACTTAAAAAAAAAATTATACCAC  250

seq1  CCAAATAATTTGCTGAGAAAGGAGATAGGAAAACCCACCATTGTGACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAATTTGCTGAGAAAGGAGATAGGAAAACCCACCATTGTGACACA  300

seq1  AAGCGACAAGTGTGCAGATGAATAGGATGCTGAAGAAGAGGTGGTGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGACAAGTGTGCAGATGAATAGGATGCTGAAGAAGAGGTGGTGGCTA  350

seq1  AGTGTGACTAGCTCTACAGATGGACGCTGGGGATGTCCACAGATGATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGACTAGCTCTACAGATGGACGCTGGGGATGTCCACAGATGATGCT  400

seq1  TGGTTGGGGGCAAGGGAAACCCAACCCATGCTGGCAAAGTCTATGAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGGGGCAAGGGAAACCCAACCCATGCTGGCAAAGTCTATGAACCA  450

seq1  GGCAGGGGTAGGCCACCATAGACAGTGGGAAAAACCACTGGCCTCAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGTAGGCCACCATAGACAGTGGGAAAAACCACTGGCCTCAGAAT  500

seq1  TCATGTTCCCGGTTTACAAACCGGTTTCCCCATGATACTAGTTTCCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCCCGGTTTACAAACCGGTTTCCCCATGATACTAGTTTCCACAT  550

seq1  GCTGTCCTGTGAGCACAGCGCCTGGTACCTTCAAACACTCCAACCCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGTGAGCACAGCGCCTGGTACCTTCAAACACTCCAACCCTGTT  600

seq1  GTCTCGTTTTTTCTAGAATTAATGTCAGTGAACAATGTGTTTCTGGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGTTTTTTCTAGAATTAATGTCAGTGAACAATGTGTTTCTGGGATC  650

seq1  GTATCCTTCTGAAGACTCCAGGAGAACCTTCATGGTGCCTCTCTCTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTCTGAAGACTCCAGGAGAACCTTCATGGTGCCTCTCTCTTTCC  700

seq1  TACTGTCTACTGCTGGTCAGCCCTCTGCGGTGAGCGGATCACTAGCAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCTACTGCTGGTCAGCCCTCTGCGGTGAGCGGATCACTAGCAGGC  750

seq1  TTCACAGAGCATTCCTGCCCACAGGAGGTCTCTCAGCCCAATTTCCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGAGCATTCCTGCCCACAGGAGGTCTCTCAGCCCAATTTCCATCC  800

seq1  TCTGATAAAGCTACGAGTCACTGCGACAGGGCTTGCCCCAGCCCAGCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAAAGCTACGAGTCACTGCGACAGGGCTTGCCCCAGCCCAGCACA  850

seq1  ACCTCACTAATTATATCTGCAAAGACCCTATGTCCTAACAAAGCTTCTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACTAATTATATCTGCAAAGACCCTATGTCCTAACAAAGCTTCTTT  900

seq1  CTGAAGTTCCAGGTGGACATGGACTGGGGGACGTGCCACCACTTCAGCCA  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTCCA-GTGGACATGGACTGGGGGACGTGCCACCACTTCAGCCA  949

seq1  GAACGCCACCAACTCAGCAGGCAACTTCACGGCAGTCACTTAACATGTCC  1000
      ||||||||||||||||||||   |||||||||||||||||| ||||||||
seq2  GAACGCCACCAACTCAGCAG--CACTTCACGGCAGTCACTT-ACATGTCC  996

seq1  AAGAAACCCTTCTGCTCAACATGGGCCCCAAATTCCTTCCCCTGGAGCAA  1050
      |||||||||||||||||||||| |||| |||||||  | |||||||||||
seq2  AAGAAACCCTTCTGCTCAACAT-GGCCTCAAATTC--TTCCCTGGAGCAA  1043

seq1  GGCTTTAGCAGGCACTGACTCGGACGCCCCTCATATAAACGGGGGACTTC  1100
      |||||||||| |||||||||||||||||||||   ||||  |||||||||
seq2  GGCTTTAGCA-GCACTGACTCGGACGCCCCTC---TAAAACGGGGACTTC  1089

seq1  GGCCTGGGCTAAAAGTCCAGGAGCCT-GGAGATTTGTAGTGTCAG  1144
       ||||||||| || |||||||||||| |||||||||| |||||||
seq2  -GCCTGGGCT-AAGGTCCAGGAGCCTGGGAGATTTGT-GTGTCAG  1131

seq1: chr11_88563934_88564832
seq2: B6Ng01-029H04.g_67_963 (reverse)

seq1  CCCCCTCCTCCAGTGGCTTCTCTTTGGTGCTTTATTCAACATCACCGCAC  50
      ||||||||||||||||||| | ||||||||||| |||||||| | |||||
seq2  CCCCCTCCTCCAGTGGCTTTTTTTTGGTGCTTT-TTCAACAT-AACGCAC  48

seq1  ACAC-AAATCATGCTCTGAAAGTCGTTTACGGGATGTCATCTTAGGATAA  99
      |||| |||||||||||||||||||| ||||||||||||||||| || |||
seq2  ACACAAAATCATGCTCTGAAAGTCG-TTACGGGATGTCATCTTTGGGTAA  97

seq1  AAAAAAAAAAAAAGAAAAGAAAAGAAAAAGAAAAGAAAGAGCGCAGTGTC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAGAAAAGAAAAGAAAAAGAAAAGAAAGAGCGCAGTGTC  147

seq1  CGTGTGTCTGCAATTGCCCAAAGAGAATAATTCATTTCTGTGGAGGCTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTCTGCAATTGCCCAAAGAGAATAATTCATTTCTGTGGAGGCTAT  197

seq1  GGGTGAAGCCCTGAATGCATTCCTACACCGTTTTCCTGCCCTTCAAAACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAGCCCTGAATGCATTCCTACACCGTTTTCCTGCCCTTCAAAACA  247

seq1  ATAAAAATGTAAAAACCCAGATGAAGCAGGCTTGGAGGGTGGCGGGAACG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGTAAAAACCCAGATGAAGCAGGCTTGGAGGGTGGCGGGAACG  297

seq1  ACAGTCTCTTGACCCCCAATGAATTTATTCTCCAGAACCTTCTAAAGCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCTTGACCCCCAATGAATTTATTCTCCAGAACCTTCTAAAGCAC  347

seq1  TCTCCCCAGAATTCATCGTCAAGACCATTTTATTAGATTTTTCTAAACCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAGAATTCATCGTCAAGACCATTTTATTAGATTTTTCTAAACCC  397

seq1  TTGAAATTGTCACATAATTGAAACAGAAACAGCAATTTGGAGTTCTGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTGTCACATAATTGAAACAGAAACAGCAATTTGGAGTTCTGAAT  447

seq1  GGATTTCTTAAAAAGACGACTCTGTGCTCGCCCCACATCCCTCAGCTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCTTAAAAAGACGACTCTGTGCTCGCCCCACATCCCTCAGCTGGC  497

seq1  CGCTCTTGCCCCTAACCTAAATGCTAGCCCCTTGCACACAAAACCCTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTGCCCCTAACCTAAATGCTAGCCCCTTGCACACAAAACCCTATT  547

seq1  TATCTTTTAAATCCTCCCCTACCATAAAAGTTACACATTCCCCTAATGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTAAATCCTCCCCTACCATAAAAGTTACACATTCCCCTAATGCC  597

seq1  ATAGATTTCAGGACATTTGGGAGAAACATCCCAGACAACAGGCTAAAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTTCAGGACATTTGGGAGAAACATCCCAGACAACAGGCTAAAAAA  647

seq1  AGAATCCATTAGCATTAACTTGCCTGTCACAGCCAGTGACAGATAAATGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCATTAGCATTAACTTGCCTGTCACAGCCAGTGACAGATAAATGA  697

seq1  ATGTGGTGCTTTCAGATCAGTCATTGGTGAAACTACCCCCAGGCAGATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGCTTTCAGATCAGTCATTGGTGAAACTACCCCCAGGCAGATAA  747

seq1  AGACCAGCCCCGGGAGAGAGAAGGCTCTAGAGGAGACCTCTCCCAGTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCCCCGGGAGAGAGAAGGCTCTAGAGGAGACCTCTCCCAGTGGG  797

seq1  GTCTCAGCTCTTCCCTAGCTACAGCCCAGGACTTTACTCTCAAAGGCAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGCTCTTCCCTAGCTACAGCCCAGGACTTTACTCTCAAAGGCAGG  847

seq1  GAGAGAAAAAAAAACCCACAGGCATCCAACACAGAGAAGGAAATGAATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAAAAAAACCCACAGGCATCCAACACAGAGAAGGAAATGAATTC  897