BAC Information

Click to search

BAC

Clone NameB6Ng01-029O01
Chromosome11 (Build37)
Map Location 104,317,411 - 104,399,634
singlet/doubletdoublet
Overlap geneCdc27
Upstream geneLrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik
Downstream geneMyl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029O01.bB6Ng01-029O01.g
ACCDH859947DH859948
length1,007690
definitionDH859947|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O01, 5' end.DH859948|Mus musculus domesticus DNA, BAC clone: B6Ng01-029O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,398,623 - 104,399,634)(104,317,411 - 104,318,115)
sequence
gaattcaaagccaggcaggactacatggtgagaccctgtctcaaaaaaag
gagtggaaggaagaagaaagagtgggctagagatgagcagtagtgagtct
tgtcagaatctggagggagaatcagaaaacaatattcacacaaagtatta
cggttatgctctgagtagataagtatgttgctatctattacaggcagatt
ctgtaagaaggaatagagtctggtaatagcatgtggataaattagcggca
aatatggtagaacattttatgagggctctagatgttcctgcacagcatat
attcagtactttttaaatggctttaaatgtggcagaatcctagagtaatc
caacaaagctttctaacagtcctgttttcatttagtggcctcatctcatc
tttagttcccaaacaataaaagatcctctagccctaatgagtcccgttag
tgtggtctgataatcagtaatataaatattactttccatgaggttgagta
ttactgaattgatctgtatgaaagtgttttaaaataatcatgttcaactg
ctggcagagaaatatattcaaacacgcacgcacacacacacacacacaca
cacacacacacacacatatatatgcatacacatacacacatacatataga
tggaggagggctgagaagagaagaggctaactctccctggcatgggcaca
ctatcttctcagtccccttatttattattttttaaatagctttttttcct
tataaaattagtaaaaacttaaaatctgtctcacacaaaggagtgtgagg
aagagaaggatgaatgggctaggaagaagttagtatatattgaattattt
taaactaggtttaggagatgagcaagttattggtgaagaaaaggggtata
tagaagtgtagaaaagccgggcagtgtggtgccatctttaatcccagcac
ctggaggcagaggcaggcagatttctgagtcgaagccagcctggtctacg
agtgagt
gaattccagtaagcaggcagaggattaaaagtgcccggccattaagctag
acagcatattaaaaataagctaatgtgtgtgtgtgtctttcattcaagga
tccagattccctgggcaggaggctagaagcatgacccacagggagtagct
aaaaactcactgcaacacaaggtcatatgggagaaatgaccttctataag
tatcaggtggacagaactaaaatctatttgctctagcaccatttacccaa
tcacttgttcaactctacatattaagctactcaaaacacttaatgaacaa
aagcgtcaatgtaaacttctgtctactcaagaaacaagcaaatctcttac
agagatgggatcaagacatattagcaaggaaaagacccgtggctcaaaaa
ggagaaatcacacaccagcctacctaaattctctgagaaatatgtaaata
ctatctaagtgtgcttctatgacaatcttgataaaactctagctgggcat
ggtggcacacaccttttaatcccagcattcgggagggaggaagaagcaga
cggatcgctgtgagttggaggtcagcctggtctcaagagtgagttccagg
atagccaaggttacacagagaaaccttgtcttggaaaaaaaaaaaaaaaa
agaaaggaaggaagggagggaggacggaggggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_104398623_104399634
seq2: B6Ng01-029O01.b_44_1050 (reverse)

seq1  ACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTC  50
      |||||||| ||||||||||||||| ||| |||||||||||||||||||||
seq2  ACTCACTC-GTAGACCAGGCTGGCTTCG-ACTCAGAAATCTGCCTGCCTC  48

seq1  TGCCTCCCAGGTGCTGGGATTAAAGGTGTGCACCACCACTGCCCGGCTTT  100
      ||||| ||||||||||||||||||| || |||||| ||||||||||||||
seq2  TGCCT-CCAGGTGCTGGGATTAAAGATG-GCACCA-CACTGCCCGGCTTT  95

seq1  TCTACACTTCTATATACCCCTTTTCTTCACCAATAACTTGCTCATCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTTCTATATACCCCTTTTCTTCACCAATAACTTGCTCATCTCCT  145

seq1  AAACCTAGTTTAAAATAATTCAATATATACTAACTTCTTCCTAGCCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTAGTTTAAAATAATTCAATATATACTAACTTCTTCCTAGCCCATT  195

seq1  CATCCTTCTCTTCCTCACACTCCTTTGTGTGAGACAGATTTTAAGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTCTCTTCCTCACACTCCTTTGTGTGAGACAGATTTTAAGTTTTT  245

seq1  ACTAATTTTATAAGGAAAAAAAGCTATTTAAAAAATAATAAATAAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTTTATAAGGAAAAAAAGCTATTTAAAAAATAATAAATAAGGGGA  295

seq1  CTGAGAAGATAGTGTGCCCATGCCAGGGAGAGTTAGCCTCTTCTCTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGATAGTGTGCCCATGCCAGGGAGAGTTAGCCTCTTCTCTTCTC  345

seq1  AGCCCTCCTCCATCTATATGTATGTGTGTATGTGTATGCATATATATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCCTCCATCTATATGTATGTGTGTATGTGTATGCATATATATGTG  395

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTTTGAATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGTTTGAATATA  445

seq1  TTTCTCTGCCAGCAGTTGAACATGATTATTTTAAAACACTTTCATACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGCCAGCAGTTGAACATGATTATTTTAAAACACTTTCATACAGA  495

seq1  TCAATTCAGTAATACTCAACCTCATGGAAAGTAATATTTATATTACTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTCAGTAATACTCAACCTCATGGAAAGTAATATTTATATTACTGAT  545

seq1  TATCAGACCACACTAACGGGACTCATTAGGGCTAGAGGATCTTTTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGACCACACTAACGGGACTCATTAGGGCTAGAGGATCTTTTATTGT  595

seq1  TTGGGAACTAAAGATGAGATGAGGCCACTAAATGAAAACAGGACTGTTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAACTAAAGATGAGATGAGGCCACTAAATGAAAACAGGACTGTTAG  645

seq1  AAAGCTTTGTTGGATTACTCTAGGATTCTGCCACATTTAAAGCCATTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTGTTGGATTACTCTAGGATTCTGCCACATTTAAAGCCATTTAA  695

seq1  AAAGTACTGAATATATGCTGTGCAGGAACATCTAGAGCCCTCATAAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTGAATATATGCTGTGCAGGAACATCTAGAGCCCTCATAAAATG  745

seq1  TTCTACCATATTTGCCGCTAATTTATCCACATGCTATTACCAGACTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACCATATTTGCCGCTAATTTATCCACATGCTATTACCAGACTCTAT  795

seq1  TCCTTCTTACAGAATCTGCCTGTAATAGATAGCAACATACTTATCTACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTACAGAATCTGCCTGTAATAGATAGCAACATACTTATCTACTC  845

seq1  AGAGCATAACCGTAATACTTTGTGTGAATATTGTTTTCTGATTCTCCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAACCGTAATACTTTGTGTGAATATTGTTTTCTGATTCTCCCTC  895

seq1  CAGATTCTGACAAGACTCACTACTGCTCATCTCTAGCCCACTCTTTCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTGACAAGACTCACTACTGCTCATCTCTAGCCCACTCTTTCTTC  945

seq1  TTCCTTCCACTCCTTTTTTTGAGACAGGGTCTCACCATGTAGTCCTGCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCACTCCTTTTTTTGAGACAGGGTCTCACCATGTAGTCCTGCCT  995

seq1  GGCTTTGAATTC  1012
      ||||||||||||
seq2  GGCTTTGAATTC  1007

seq1: chr11_104317411_104318115
seq2: B6Ng01-029O01.g_68_757

seq1  GAATTCCAGTAAGCAGGCAGAGGATTAAAAGTGCCCGGCCATTAAGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAAGCAGGCAGAGGATTAAAAGTGCCCGGCCATTAAGCTAG  50

seq1  ACAGCATATTAAAAATAAGCTAATGTGTGTGTGTGTCTTTCATTCAAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATATTAAAAATAAGCTAATGTGTGTGTGTGTCTTTCATTCAAGGA  100

seq1  TCCAGATTCCCTGGGCAGGAGGCTAGAAGCATGACCCACAGGGAGTAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATTCCCTGGGCAGGAGGCTAGAAGCATGACCCACAGGGAGTAGCT  150

seq1  AAAAACTCACTGCAACACAAGGTCATATGGGAGAAATGACCTTCTATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTCACTGCAACACAAGGTCATATGGGAGAAATGACCTTCTATAAG  200

seq1  TATCAGGTGGACAGAACTAAAATCTATTTGCTCTAGCACCATTTACCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGTGGACAGAACTAAAATCTATTTGCTCTAGCACCATTTACCCAA  250

seq1  TCACTTGTTCAACTCTACATATTAAGCTACTCAAAACACTTAATGAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGTTCAACTCTACATATTAAGCTACTCAAAACACTTAATGAACAA  300

seq1  AAGCGTCAATGTAAACTTCTGTCTACTCAAGAAACAAGCAAATCTCTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTCAATGTAAACTTCTGTCTACTCAAGAAACAAGCAAATCTCTTAC  350

seq1  AGAGATGGGATCAAGACATATTAGCAAGGAAAAGACCCGTGGCTCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGGGATCAAGACATATTAGCAAGGAAAAGACCCGTGGCTCAAAAA  400

seq1  GGAGAAATCACACACCAGCCTACCTAAATTCTCTGAGAAATATGTAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAATCACACACCAGCCTACCTAAATTCTCTGAGAAATATGTAAATA  450

seq1  CTATCTAAGTGTGCTTCTATGACAATCTTGATAAAACTCTAGCTGGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAAGTGTGCTTCTATGACAATCTTGATAAAACTCTAGCTGGGCAT  500

seq1  GGTGGCACACACCTTTTAATCCCAGCATTCGGGAGGGAGGAAGAAGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCACACACCTTTTAATCCCAGCATTCGGGAGGGAGGAAGAAGCAGA  550

seq1  CGGATCGCTGTGAGTTGGAGGTCAGCCTGGTCTCAAGAGTGAGTTCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATCGCTGTGAGTTGGAGGTCAGCCTGGTCTCAAGAGTGAGTTCCAGG  600

seq1  ATAGCCAAGGTTACACAGAGAAACCTTGTCTTGGAAAAAAAAAAAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAAGGTTACACAGAGAAACCTTGTCTTGGAAAAAAAAAAAAAAAA  650

seq1  AGAAAGGAAGGAAGGGAGGGAGGACGGA-GGGGGAGGGGATGGGGAGGAG  699
      |||||||||||||||||||||||||||| |||||||||||          
seq2  AGAAAGGAAGGAAGGGAGGGAGGACGGAGGGGGGAGGGGA----------  690

seq1  AGGGGA  705
            
seq2  ------  690