BAC Information

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BAC

Clone NameB6Ng01-030F03
Chromosome11 (Build37)
Map Location 6,178,806 - 6,307,821
singlet/doubletdoublet
Overlap geneOgdh, LOC100042227, Zmiz2
Upstream geneZnrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4
Downstream genePpia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030F03.bB6Ng01-030F03.g
ACCDH860264DH860265
length1,131935
definitionDH860264|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F03, 5' end.DH860265|Mus musculus domesticus DNA, BAC clone: B6Ng01-030F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,306,673 - 6,307,821)(6,178,806 - 6,179,699)
sequence
gaattctaccttttgctgggtagtggtggttcgtgccttcaatcccagca
cttgggaggcagaggcagttggatttctgagtttgaggccagcctggtct
acagagtgagttccaggacagccagggatacagagagaaaccctgtctcg
gaaaaccaaccaaccaaccaacaattccaccttttaaatgtagactgttg
gctggtttgagggtgcatgccttgaattcacgcatccaggaggcagtatg
ttgatctctgtgagttcaaggctagcctattctacacattgagttccagg
acagccagatttagtgagattctgtctcacaaggttacccactccctcct
tgatctgctccaaggttgagtatgctgttttcatttgtctgaacattttt
tttcttttaacctatcagttgttaaaagacggtgtgatacacatgtaatt
ctagcactcaggcaaagcaggatgatgaggctagcctgggcttcatgagg
gagcctgtctcgtctcaaaaccagatgtgatttccaaatttgtttctttc
ctgcttgtgtgctggactccactgcagagaggcagcaggttccagtctaa
ctgcctgaggcatgctatatatcctggggtatgttgcatgtattctgtat
gtcaggtctagtcaactttattaaagttatgtaatacttggcacatacat
aaattatagtgacagagccagtgcaatgcggtggagagccctaaagccag
cagccctcactgggtccatgcgcctgctttgttgaaggaatgcatgtaca
ggtcctgtgcagctcactagcctagagcttcataaaagccagtactgagt
ttctgccaccttttctgtcacccattcacaaccgagcacagggactctgg
cagccactcctcgatcacttgtccagctcctgaggtggcttttctggatg
gctgtggtcagacagatggctatgggtgctgctggtttctaggttcttca
gaccgcaggtacctattacagagtctatgccggaatctgctttccaacct
ggctcccttcctccctcgtctagttttcttcctttctcagaaggctgtac
tcgctgtggcgtcttacatccttggcctggc
gaattccctagcacccacatggcaggtctcaattgtctgtgattccagta
ccaaaggatccaaccctttcatataggcatacaggcaaaacaccgaagta
cataaaattaaccactttagaagaagaagaagaaggaaaaggagaaggag
aaggagaaggagaaaaaggagaaaaaggagaagaagaagaagaagaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaac
aacagaggcagacaaatataacagcacttgattgtaatcctggttctgtg
gaagcagaaacacagaaatttctggggcttgggcagccaatctagacgaa
ttggcagtttggatctcagtcagagatcctgtctcaacaaacaaggtagg
gactgtcaagagttcagcaggttaatgaacttgttgccaagctaaaggac
ctgagttcaaattccagtatccacatgctagaagaagggaaccaatcctg
aaggttgttcttacactggtgggccatgacacacacacacatgtgagtgt
gctcacacaaacatactacagagataaaacataatttaagaaattaagag
atggggctggcaagatggctcagtgattaagagcgctgactgctatttct
gaggtcctgagttcaaatcccagcaaccaaatggtggctcacaaccaccc
taactgagaactgatgccctcttctggtgtgtctgaagacagctatagtg
tactcacatataatatataataagtaaaacttagcaaggcacagtggcat
acacctttaatcccagcactcaggaggcagagacaggcagatttagagtt
caaggccagcttgttctcaaagtgagtttcaggacagccagggcttcaca
gagaaccctatctcaaaacaaaactaagacaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_6306673_6307821
seq2: B6Ng01-030F03.b_45_1175 (reverse)

seq1  GCCAGGGCCAAGGGAATGTAAGGACGCCACAGCAGTGTACAGCCTCTGTG  50
      |||| ||||||||  |||||| ||||||||||| | ||||||||| | ||
seq2  GCCA-GGCCAAGG--ATGTAA-GACGCCACAGC-GAGTACAGCCT-TCTG  44

seq1  AAGGAAGGGGAGGAAGAGCTAGACGAGGGGAGGAGAGGGAGCAGGGTTGG  100
      |  ||| || ||  | | |||||||| ||||||| |||||||  ||||||
seq2  A--GAAAGGAAG--AAAACTAGACGA-GGGAGGA-AGGGAGCCAGGTTGG  88

seq1  AAGAGGCAGGATGCCGGCATAGACTCTGTAATAGGTACCTGCGGTCTGGA  150
      |  | ||| ||| ||||||||||||||||||||||||||||||||||| |
seq2  A--AAGCA-GATTCCGGCATAGACTCTGTAATAGGTACCTGCGGTCTGAA  135

seq1  GAAACCTAGAGACCAGCAGCA-CCATAGCCATCTGTCCTGACCACAGCCA  199
      | |||||||| |||||||||| |||||||||||||| |||||||||||||
seq2  G-AACCTAGAAACCAGCAGCACCCATAGCCATCTGT-CTGACCACAGCCA  183

seq1  TCCAGAAAAGCCAACCTCAGGAGCTGGACAAGTGATCGAGGAGTGGCTGC  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAAAGCC-ACCTCAGGAGCTGGACAAGTGATCGAGGAGTGGCTGC  232

seq1  CAGAGTCCCTGTGCTCGGTTGTGAATGGGTGACAGAAAAGGTGGCAGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCCCTGTGCTCGGTTGTGAATGGGTGACAGAAAAGGTGGCAGAAA  282

seq1  CTCAGTACTGGCTTTTATGAAGCTCTAGGCTAGTGAGCTGCACAGGACCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACTGGCTTTTATGAAGCTCTAGGCTAGTGAGCTGCACAGGACCT  332

seq1  GTACATGCATTCCTTTCAACAAAGCAGGCGCATGGACCCAGTGAGGGCTG  399
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTACATGCATTCC-TTCAACAAAGCAGGCGCATGGACCCAGTGAGGGCTG  381

seq1  CTGGCTTTAGGGCTCTCCACCGCATTGCACTGGCTCTGTCACTATAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTTAGGGCTCTCCACCGCATTGCACTGGCTCTGTCACTATAATTT  431

seq1  ATGTATGTGCCAAGTATTACATAACTTTAATAAAGTTGACTAGACCTGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGCCAAGTATTACATAACTTTAATAAAGTTGACTAGACCTGAC  481

seq1  ATACAGAATACATGCAACATACCCCAGGATATATAGCATGCCTCAGGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAATACATGCAACATACCCCAGGATATATAGCATGCCTCAGGCAG  531

seq1  TTAGACTGGAACCTGCTGCCTCTCTGCAGTGGAGTCCAGCACACAAGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGGAACCTGCTGCCTCTCTGCAGTGGAGTCCAGCACACAAGCAG  581

seq1  GAAAGAAACAAATTTGGAAATCACATCTGGTTTTGAGACGAGACAGGCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACAAATTTGGAAATCACATCTGGTTTTGAGACGAGACAGGCTC  631

seq1  CCTCATGAAGCCCAGGCTAGCCTCATCATCCTGCTTTGCCTGAGTGCTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGAAGCCCAGGCTAGCCTCATCATCCTGCTTTGCCTGAGTGCTAG  681

seq1  AATTACATGTGTATCACACCGTCTTTTAACAACTGATAGGTTAAAAGAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACATGTGTATCACACCGTCTTTTAACAACTGATAGGTTAAAAGAAA  731

seq1  AAAAATGTTCAGACAAATGAAAACAGCATACTCAACCTTGGAGCAGATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTCAGACAAATGAAAACAGCATACTCAACCTTGGAGCAGATCA  781

seq1  AGGAGGGAGTGGGTAACCTTGTGAGACAGAATCTCACTAAATCTGGCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGTGGGTAACCTTGTGAGACAGAATCTCACTAAATCTGGCTGT  831

seq1  CCTGGAACTCAATGTGTAGAATAGGCTAGCCTTGAACTCACAGAGATCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAACTCAATGTGTAGAATAGGCTAGCCTTGAACTCACAGAGATCAA  881

seq1  CATACTGCCTCCTGGATGCGTGAATTCAAGGCATGCACCCTCAAACCAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGCCTCCTGGATGCGTGAATTCAAGGCATGCACCCTCAAACCAGC  931

seq1  CAACAGTCTACATTTAAAAGGTGGAATTGTTGGTTGGTTGGTTGGTTTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTCTACATTTAAAAGGTGGAATTGTTGGTTGGTTGGTTGGTTTTC  981

seq1  CGAGACAGGGTTTCTCTCTGTATCCCTGGCTGTCCTGGAACTCACTCTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGACAGGGTTTCTCTCTGTATCCCTGGCTGTCCTGGAACTCACTCTGT  1031

seq1  AGACCAGGCTGGCCTCAAACTCAGAAATCCAACTGCCTCTGCCTCCCAAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCAAACTCAGAAATCCAACTGCCTCTGCCTCCCAAG  1081

seq1  TGCTGGGATTGAAGGCACGAACCACCACTACCCAGCAAAAGGTAGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTGAAGGCACGAACCACCACTACCCAGCAAAAGGTAGAATTC  1131

seq1: chr11_6178806_6179699
seq2: B6Ng01-030F03.g_112_1001

seq1  CAGTACCAAAGGATCCAACCCTTTCATATAGGCATACAGGCAAAACACCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCAAAGGATCCAACCCTTTCATATAGGCATACAGGCAAAACACCG  50

seq1  AAGTACATAAAATTAACCACTTTAGAAGAAGAAGAAGAAGGAAAAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATAAAATTAACCACTTTAGAAGAAGAAGAAGAAGGAAAAGGAGA  100

seq1  AGGAGAAGGAGAAGGAGAAAAAGGAGAAAAAGGAGAAGAAGAAGAAGAAG  150
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  AGGAGAAGGAGAAGGAGAAAAAGGAGAAAAAGG---AGAAGAAGAAGAAG  147

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAA  197

seq1  GAAGAAACAACAGAGGCAGACAAATATAACAGCACTTGATTGTAATCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAACAACAGAGGCAGACAAATATAACAGCACTTGATTGTAATCCTG  247

seq1  GTTCTGTGGAAGCAGAAACACAGAAATTTCTGGGGCTTGGGCAGCCAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTGGAAGCAGAAACACAGAAATTTCTGGGGCTTGGGCAGCCAATC  297

seq1  TAGACGAATTGGCAGTTTGGATCTCAGTCAGAGATCCTGTCTCAACAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGAATTGGCAGTTTGGATCTCAGTCAGAGATCCTGTCTCAACAAAC  347

seq1  AAGGTAGGGACTGTCAAGAGTTCAGCAGGTTAATGAACTTGTTGCCAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGGGACTGTCAAGAGTTCAGCAGGTTAATGAACTTGTTGCCAAGC  397

seq1  TAAAGGACCTGAGTTCAAATTCCAGTATCCACATGCTAGAAGAAGGGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGACCTGAGTTCAAATTCCAGTATCCACATGCTAGAAGAAGGGAAC  447

seq1  CAATCCTGAAGGTTGTTCTTACACTGGTGGGCCATGACACACACACACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCTGAAGGTTGTTCTTACACTGGTGGGCCATGACACACACACACAT  497

seq1  GTGAGTGTGCTCACACAAACATACTACAGAGATAAAACATAATTTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGCTCACACAAACATACTACAGAGATAAAACATAATTTAAGAA  547

seq1  ATTAAGAGATGGGGCTGGCAAGATGGCTCAGTGATTAAGAGCGCTGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGATGGGGCTGGCAAGATGGCTCAGTGATTAAGAGCGCTGACTG  597

seq1  CTATTTCTGAGGTCCTGAGTTCAAATCCCAGCAACCAAATGGTGGCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTGAGGTCCTGAGTTCAAATCCCAGCAACCAAATGGTGGCTCAC  647

seq1  AACCACCCTAACTGAGAACTGATGCCCTCTTCTGGTGTGTCTGAAGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCTAACTGAGAACTGATGCCCTCTTCTGGTGTGTCTGAAGACAG  697

seq1  CTATAGTGTACTCACATATAATATATAATAAGTAAAACTTAGCAAGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGTGTACTCACATATAATATATAATAAGTAAAACTTAGCAAGGCAC  747

seq1  AGTGGCATACACCTTTAATCCCAGCACTCAGGAGGCAGAGACAGGCAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCATACACCTTTAATCCCAGCACTCAGGAGGCAGAGACAGGCAGAT  797

seq1  TTCAGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCA  850
      || |||||||||||||||| || ||| ||||||||||| |||||||||||
seq2  TT-AGAGTTCAAGGCCAGCTTGTTCT-CAAAGTGAGTTTCAGGACAGCCA  845

seq1  GGGCTACACAGAGAAACCCTATCTCAAAAAACAA--AAAACAAAAA  894
      ||||| ||||||| ||||||||||||||| | ||  || |||||||
seq2  GGGCTTCACAGAG-AACCCTATCTCAAAACAAAACTAAGACAAAAA  890