BAC Information

Click to search

BAC

Clone NameB6Ng01-030O17
Chromosome11 (Build37)
Map Location 27,729,383 - 27,730,386
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666270, LOC100042367, LOC100042377
Downstream geneEG626571, Ccdc85a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030O17.bB6Ng01-030O17.g
ACCDH860681DH860682
length1,2601,017
definitionDH860681|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O17, 5' end.DH860682|Mus musculus domesticus DNA, BAC clone: B6Ng01-030O17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctattagaccttcaaagaagacctaataccaatacccttcaaacc
attccacaaaatagaaacagaaaaaaggaatattacacaatttattctat
aaagccagagttactctgaggattctcccttggtgatagcctggtctctc
tctaatcaggaacttgtaacaatttcctttcatagaggaatttataggag
gtttttttctacttctatcatgtttaatattctaaatagattttgaaaac
tgtttgagtgcatattacttttagcttcagaagatatcatgtatatttaa
gaggcatttcactattataaattattttgatgacttaaaaaagtcaattc
tgagttgtatattttaaaataaattttattagtttaataaaaattggaaa
aaaagacaaaattctcacaaacctattccaagaacacttcaaaatgatct
ttcaatgtgatcaagtaggcttcatttcagggttacagggatggttcaaa
atatggaaatccatcaacataattcactgtgtaaacaaactcaagaaaaa
agaaaaacacatgatcatttcattagatgctgaaaaagatttgacaaaat
tcactatcccctcatgttaaatgtcttggaaagattaagaattcaaggcc
catacctaaacatatacagtatagagcaaaccagtagccaacatcaaact
aaatggagagaatcttgaaataatcccaccaaaatcacggactagacaag
gcagcccactgtctccctatgtattctatatagtactcaaagttctagcc
aaagaagtgagacaacaaaaggaggtcaaatagatacaatttagaaaggg
agaagcccaagtgtcattatttgcagaagatatgggagtatacttaagtg
actccaaaattctagtagagaactccgtcagatgataacacatagtttca
aagtgactgatataattgactcaacagtcagtagcttctctactaaagga
ttaatagactgagaagagttaagaaacaacaccctttacaatagttacaa
tatgaattttctgatgtgactcttacaagcagcgaagatctgtacaagac
ttcagtcggaaatcgaaaatgagattcaagaatgaagactccatggctat
gttcgattacatgaatgtcaactctacatagcattcagattcaacgttcc
atcaatcacctgacttccctgtaggatctcgaggcgacgtacaatcacat
ttgtatcgat
gaattcagtttcatgcagaggtaggggaaggtagcagccgaaagagaagg
ggaaaagagagagagagagggagggcagttccccttatttatagggaaaa
tgacataactcaggtaaaggtgcagggtgagccatgtggattctgggaat
atggtgcctgttgtcttgcaacaggtctgcaggttgcattgttgcccatg
tgatgtcataggtttgggaggtcctgatcccaacactatgtgtaggtcat
tcttgctggtaactataaacaaacatacactaatcaggaagggaagtgga
ttttaagattgatatgactccctgctaccaccatgcccctgacctacaac
catacatgttgagggagcaaaacatgctactggtattaagggagatttgg
taaagtgaaaaatattgatgatatagaaaaaaaagaatataaattataat
gagaaagttgtaaaactcgaatgagggtagaatagttttattttcagtgt
aaaatttgttatcaaaaagataaggaaggatatttcttactcatcaaagg
aaatatctaccaagatgaactctaaattctgaacacctatgctccaaatg
cagggcaaacacattcataaaagaaactttactaaagctcaaagcacata
tcacacccccacacaataatagtggggcacttcaacaccccactctcatt
aatgaacagatcatggaaacagaaactcaacaaagatacattgaaactaa
cagaagttatgaacaaaatggttttaagagatatgtacagaacattttat
cctaaaacaaaataatgtaccttcttctcagccactcatggtaccttctc
caaaactgaccatataaccaggccttacagatacaagaaggttgaaataa
tctcatgcatcctatcagatcattgcagactaaagctggtcttcatacaa
caaaacaacagaaagctaatacatattggaagcaaccactgctcttttca
atacttggtcaggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_27729383_27730386
seq2: B6Ng01-030O17.g_68_1065

seq1  GAATTCAGTTTCATGCAGAGGTAGGGGAAGGTAGCAGCCGAAAGAGAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCATGCAGAGGTAGGGGAAGGTAGCAGCCGAAAGAGAAGG  50

seq1  GGAAAAGAGAGAGAGAGAGGGAGGGCAGTTCCCCTTATTTATAGGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGAGAGAGAGAGAGGGAGGGCAGTTCCCCTTATTTATAGGGAAAA  100

seq1  TGACATAACTCAGGTAAAGGTGCAGGGTGAGCCATGTGGATTCTGGGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAACTCAGGTAAAGGTGCAGGGTGAGCCATGTGGATTCTGGGAAT  150

seq1  ATGGTGCCTGTTGTCTTGCAACAGGTCTGCAGGTTGCATTGTTGCCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCTGTTGTCTTGCAACAGGTCTGCAGGTTGCATTGTTGCCCATG  200

seq1  TGATGTCATAGGTTTGGGAGGTCCTGATCCCAACACTATGTGTAGGTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCATAGGTTTGGGAGGTCCTGATCCCAACACTATGTGTAGGTCAT  250

seq1  TCTTGCTGGTAACTATAAACAAACATACACTAATCAGGAAGGGAAGTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTGGTAACTATAAACAAACATACACTAATCAGGAAGGGAAGTGGA  300

seq1  TTTTAAGATTGATATGACTCCCTGCTACCACCATGCCCCTGACCTACAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGATTGATATGACTCCCTGCTACCACCATGCCCCTGACCTACAAC  350

seq1  CATACATGTTGAGGGAGCAAAACATGCTACTGGTATTAAGGGAGATTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTTGAGGGAGCAAAACATGCTACTGGTATTAAGGGAGATTTGG  400

seq1  TAAAGTGAAAAATATTGATGATATAGAAAAAAAAGAATATAAATTATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTGAAAAATATTGATGATATAGAAAAAAAAGAATATAAATTATAAT  450

seq1  GAGAAAGTTGTAAAACTCGAATGAGGGTAGAATAGTTTTATTTTCAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGTTGTAAAACTCGAATGAGGGTAGAATAGTTTTATTTTCAGTGT  500

seq1  AAAATTTGTTATCAAAAAGATAAGGAAGGATATTTCTTACTCATCAAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGTTATCAAAAAGATAAGGAAGGATATTTCTTACTCATCAAAGG  550

seq1  AAATATCTACCAAGATGAACTCTAAATTCTGAACACCTATGCTCCAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTACCAAGATGAACTCTAAATTCTGAACACCTATGCTCCAAATG  600

seq1  CAGGGCAAACACATTCATAAAAGAAACTTTACTAAAGCTCAAAGCACATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCAAACACATTCATAAAAGAAACTTTACTAAAGCTCAAAGCACATA  650

seq1  TCACACCCCCACACAATAATAGTGGGGCACTTCAACACCCCACTCTCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACCCCCACACAATAATAGTGGGGCACTTCAACACCCCACTCTCATT  700

seq1  AATGAACAGATCATGGAAACAGAAACTCAACAAAGATACATTGAAACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAGATCATGGAAACAGAAACTCAACAAAGATACATTGAAACTAA  750

seq1  CAGAAGTTATGAACAAAATGGTTTTAAGAGATATGTACAGAACATTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTATGAACAAAATGGTTTTAAGAGATATGTACAGAACATTTTAT  800

seq1  CCTAAAACAAAATAATGTACCTTCTTCTCAGCCACTCATGGTACCTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACAAAATAATGTACCTTCTTCTCAGCCACTCATGGTACCTTCTC  850

seq1  CAAAACTGACCATATAACCAGGCCTTAACAGATACAAGAAGGTTGAAATA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAAAACTGACCATATAACCAGGCCTT-ACAGATACAAGAAGGTTGAAATA  899

seq1  ATCTCATGCATCCTATCAGATCATTGCAGACTAAAGCTGGTCTTCAATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  ATCTCATGCATCCTATCAGATCATTGCAGACTAAAGCTGGTCTTCA--TA  947

seq1  CAACAAAAACAACAGAAAGCCCAAATACATATGGAAGGCAAACACTGCTC  1000
      |||| ||||||||||||||  | ||||||||| | | |||| ||||||||
seq2  CAAC-AAAACAACAGAAAG--CTAATACATATTGGAAGCAACCACTGCTC  994

seq1  TATT  1004
      | ||
seq2  TTTT  998