BAC Information

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BAC

Clone NameB6Ng01-030P02
Chromosome11 (Build37)
Map Location 97,284,829 - 97,373,849
singlet/doubletdoublet
Overlap gene4933428G20Rik, P140
Upstream geneOTTMUSG00000001775, Skap1, Snx11, Cbx1, LOC629750, Nfe2l1, Copz2, LOC100040373, LOC665436, Cdk5rap3, Atad4, Pnpo, D030028A08Rik, Sp2, Sp6, Scrn2, Lrrc46, Mrpl10, Osbpl7, Tbx21, Tbkbp1, Kpnb1, Npepps, EG665490, Mrpl45, Gpr179, Socs7
Downstream gene2410003L11Rik, E130012A19Rik, Mllt6, Mel13, Pcgf2, Psmb3, Pip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030P02.bB6Ng01-030P02.g
ACCDH860699DH860700
length882411
definitionDH860699|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P02, 5' end.DH860700|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,372,966 - 97,373,849)(97,284,829 - 97,285,245)
sequence
gaattcttccatctccttctagaagcccctcatgccaccaccccagcccg
cccctcccatactcccgccatccgtccctccttcctttcatgcccgctct
accctgcccactctcacgcctgaaaggttgcagggggcatggccctttgc
cctctcatctcctcttggtgtttttggttttttaagcgatttcctttaat
tatctttcttttcctttttttcttttttaaagagcaaatgagaaagctaa
aaaccaaacacaccaacttcccctgacttccggttccctagcggcctctg
ctccgcccacttcctgtcatcttcttcccctctgctctttcaccctcctc
ccctcccctccccccaagtccatccaaagttcccacctcctctaacttcc
caagaacacttggaacaaactctgagccacggagacttggagcggagcga
ggcccccctcccgttactgggttccttcctggaggaacagatggacaagg
actgacccagcatcaggctggacaatggacaagggagaccctggccttgg
agacgcccactgtctgtccagccttcgaagagacagaactctgctgctgg
cctgtggtttttctttcaaaccagggtgggcctggaagcaggcctagctg
gaggggatccccagagaagaggccaaggctgggtgtgaggagggaaaggg
gggacactaggtgccaggggagaagcccggctcgctgctgctcagtgtcc
tgctggtgctagcaacagatggaaggaggtctccaggacacctgttatgg
aagtgcttctggggacagcctgcccctggggatctgccttggagaggaca
ttcctagagggctatctgtgacttttagttcc
aaggcctggacaactcagatgagatgctgtcttgaaataaaaaggaaagc
gagaagagggctgttgatttatctcagtgagagagtgcttgtctgatgtg
cacaaagctctgggttcaacccccagccctggataaactgggtggtggtg
catgcctgtaatcccagcactcaggaggatgttagagcccagcgccatcc
actgctccgtctccgtgaggctgtgaactcacagagatccgcttgcctct
gcttctgagtgctgggattaaaggcttgtgccaccatgcctggcttaatt
aacttaaaaaaaaaaaaataaagagtggaagacagaaaaggtgacatcca
ggtaaagaaggcttcccaaggtttcctgagggagactgtgagtgttgggg
tggagtggtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_97372966_97373849
seq2: B6Ng01-030P02.b_41_922 (reverse)

seq1  GGAACTAAAAGTACCAGATGCCCCTCTCAGAACTGCCCTCTCCCAAGGCA  50
      ||||||||||||  |||||  |||||| || | || ||||| ||||||||
seq2  GGAACTAAAAGTCACAGATAGCCCTCT-AGGAATGTCCTCT-CCAAGGCA  48

seq1  GATCCCCAGGGGCAGGCTGTCCCCAGAAGCACCTTCCATAACAGGTGTCC  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GATCCCCAGGGGCAGGCTGTCCCCAGAAGCA-CTTCCATAACAGGTGTCC  97

seq1  TGGAGACCTCCTTCCATCTGTTGCTAGCACCAGCCGGACACTGAGCAGCA  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGAGACCTCCTTCCATCTGTTGCTAGCACCAGCAGGACACTGAGCAGCA  147

seq1  GCGAGCC-GGCTTCTCCCCTGGCACCTAGTGTCCCCCCTTTCCCTCCTCA  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCCGGGCTTCTCCCCTGGCACCTAGTGTCCCCCCTTTCCCTCCTCA  197

seq1  CACCCAGCCTTGGCCTCTTCTCTGGGGATCCCCTCCAGCTAGGCCTGCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCCTTGGCCTCTTCTCTGGGGATCCCCTCCAGCTAGGCCTGCTT  247

seq1  CCAGGCCCACCCTGGTTTGAAAGAAAAACCACAGGCCAGCAGCAGAGTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCACCCTGGTTTGAAAGAAAAACCACAGGCCAGCAGCAGAGTTC  297

seq1  TGTCTCTTCGAAGGCTGGACAGACAGTGGGCGTCTCCAAGGCCAGGGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCGAAGGCTGGACAGACAGTGGGCGTCTCCAAGGCCAGGGTCT  347

seq1  CCCTTGTCCATTGTCCAGCCTGATGCTGGGTCAGTCCTTGTCCATCTGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGTCCATTGTCCAGCCTGATGCTGGGTCAGTCCTTGTCCATCTGTT  397

seq1  CCTCCAGGAAGGAACCCAGTAACGGGAGGGGGGCCTCGCTCCGCTCCAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGAAGGAACCCAGTAACGGGAGGGGGGCCTCGCTCCGCTCCAAG  447

seq1  TCTCCGTGGCTCAGAGTTTGTTCCAAGTGTTCTTGGGAAGTTAGAGGAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGTGGCTCAGAGTTTGTTCCAAGTGTTCTTGGGAAGTTAGAGGAGG  497

seq1  TGGGAACTTTGGATGGACTTGGGGGGAGGGGAGGGGAGGAGGGTGAAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTTTGGATGGACTTGGGGGGAGGGGAGGGGAGGAGGGTGAAAGA  547

seq1  GCAGAGGGGAAGAAGATGACAGGAAGTGGGCGGAGCAGAGGCCGCTAGGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGGGAAGAAGATGACAGGAAGTGGGCGGAGCAGAGGCCGCTAGGG  597

seq1  AACCGGAAGTCAGGGGAAGTTGGTGTGTTTGGTTTTTAGCTTTCTCATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGAAGTCAGGGGAAGTTGGTGTGTTTGGTTTTTAGCTTTCTCATTT  647

seq1  GCTCTTTAAAAAAGAAAAAAAGGAAAAGAAAGATAATTAAAGGAAATCGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTAAAAAAGAAAAAAAGGAAAAGAAAGATAATTAAAGGAAATCGC  697

seq1  TTAAAAAACCAAAAACACCAAGAGGAGATGAGAGGGCAAAGGGCCATGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAACCAAAAACACCAAGAGGAGATGAGAGGGCAAAGGGCCATGCC  747

seq1  CCCTGCAACCTTTCAGGCGTGAGAGTGGGCAGGGTAGAGCGGGCATGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAACCTTTCAGGCGTGAGAGTGGGCAGGGTAGAGCGGGCATGAAA  797

seq1  GGAAGGAGGGACGGATGGCGGGAGTATGGGAGGGGCGGGCTGGGGTGGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAGGGACGGATGGCGGGAGTATGGGAGGGGCGGGCTGGGGTGGTG  847

seq1  GCATGAGGGGCTTCTAGAAGGAGATGGAAGAATTC  884
      |||||||||||||||||||||||||||||||||||
seq2  GCATGAGGGGCTTCTAGAAGGAGATGGAAGAATTC  882

seq1: chr11_97284829_97285245
seq2: B6Ng01-030P02.g_67_483

seq1  GAATTCAAGGCCTGGACAACTCAGATGAGATGCTGTCTTGAAATAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCTGGACAACTCAGATGAGATGCTGTCTTGAAATAAAAAG  50

seq1  GAAAGCGAGAAGAGGGCTGTTGATTTATCTCAGTGAGAGAGTGCTTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGAGAAGAGGGCTGTTGATTTATCTCAGTGAGAGAGTGCTTGTCT  100

seq1  GATGTGCACAAAGCTCTGGGTTCAACCCCCAGCCCTGGATAAACTGGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGCACAAAGCTCTGGGTTCAACCCCCAGCCCTGGATAAACTGGGTG  150

seq1  GTGGTGCATGCCTGTAATCCCAGCACTCAGGAGGATGTTAGAGCCCAGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCATGCCTGTAATCCCAGCACTCAGGAGGATGTTAGAGCCCAGCG  200

seq1  CCATCCACTGCTCCGTCTCCGTGAGGCTGTGAACTCACAGAGATCCGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCACTGCTCCGTCTCCGTGAGGCTGTGAACTCACAGAGATCCGCTT  250

seq1  GCCTCTGCTTCTGAGTGCTGGGATTAAAGGCTTGTGCCACCATGCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCTTCTGAGTGCTGGGATTAAAGGCTTGTGCCACCATGCCTGGC  300

seq1  TTAATTAACTTAAAAAAAAAAAAATAAAGAGTGGAAGACAGAAAAGGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAACTTAAAAAAAAAAAAATAAAGAGTGGAAGACAGAAAAGGTGA  350

seq1  CATCCAGGTAAAGAAGGCTTCCCAAGGTTTCCTGAGGGAGACTGTGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGGTAAAGAAGGCTTCCCAAGGTTTCCTGAGGGAGACTGTGAGTG  400

seq1  TTGGGGTGGAGTGGTGT  417
      |||||||||||||||||
seq2  TTGGGGTGGAGTGGTGT  417