BAC Information

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BAC

Clone NameB6Ng01-031D06
Chromosome11 (Build37)
Map Location 86,888,174 - 87,009,469
singlet/doubletdoublet
Overlap gene1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37
Upstream geneBrip1, LOC668803, Ints2, Thrap1, 0610013E23Rik, Rps6kb1, Tubd1, LOC100043687, Tmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1
Downstream genePpm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031D06.bB6Ng01-031D06.g
ACCDH860887DH860888
length1,0781,049
definitionDH860887|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D06, 5' end.DH860888|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,888,174 - 86,889,260)(87,008,407 - 87,009,469)
sequence
gaattcactatataccagaggatagagtcttcgacttcaggttcttctac
ctcagcctccagagtgttgggatggtaggcaagcccagctgtggatcgta
ttttatgcaaagtaattagccacaaaggctgtggctgtggctcagttgta
aagcactttccaagcacattcaaggtttggatttgtttattgagacaggg
tgtctcactgtgttgactgtgtgctggcctcttgattcacagagaccagt
ttgcctctgccttctaagtattgggattcttttctttcccttttctcctc
tctcccttcctctctccgttctctctccctcccttcctgtctcctccccc
ccggccccccccccccttagagactgggtctcactatgtaccgaggctga
tctggaactcgctatgacaatagggctagagatccacttgcgtctgcctt
cccttaaggccaggggtttgagtcccaggacaattgcaacaacaggcaga
ctcacagtattgagctccggctggcttcaaactcctaagggtgaagcagt
cttttggtttcatccagctcattagctggaactgcaggcaagggttgctg
cacccgatcctatctcgtttatttattttttatgcatttacttatttcct
gtgtagtgtatgtgtgtgcacgtgtaaaggcagaggacaacctaaggaga
cctaaggtggcagctccttttcccactaagccatcttgctgggtcaagtg
gcagcttttggaaaggtggtaaacactctatttcacaaacatgggacaaa
atatctaatcctgtcaggacactattttaattgtatctgggaaaatagga
tcaattacaatacactacattgggtctcacttattttgcacttatctaat
tgatagcataatcacaatggtgattgtcatatgctggggaaagttactaa
agattgtgagattagcaaattatttcatagaataggtatttaataaagaa
ctttaagtaagctcgagggaacaagctctgtaatcccaccacctctggag
gtggaggcagtagaatgataaatctagg
gaattccaaactatgatgagaaatgctaatactttcgagtttgctctaga
aatgtagtagtcctacgagcgttcccattcattcattcattttaaagaaa
ggtagatagtgtctctctatgtagccctgactgtctagggtatatttcaa
agtgtacatgtgtgtgttctcttctagaacttaatcgagaacttctagag
tttaatcaagaatattaagcttctctgatttctgactgttgtctatattt
ggataattctgtgagttaaggcttctctgatttaaatactacagaggtag
atagatatgttctttacacaccagaacatgttatcacagatgatgctatc
ataggtgttgctagccaggttttcccaagcatagtctttacttaagaatg
gggaattatactgaacctctttgaagaaagagtctgtccaaaatgaccta
gaattctataggtacatcgtcatattttagctaattattctatctattca
cctttagttataaagtacacaagtctttctcatattctcaggaactagaa
atatgccattatattcattaatgcttgtcaaaaaatttcatcaaacttta
acaatgacaataagggtctttgttcacattacaccctcaacatctaaggt
aaccatctaaattttaacatttagagctacagaaaatgcaaaaaattaaa
aaaaaaacatggatggcatttaattaataccttggaatcaacacagtaaa
acagcacccgcttcccattattagtaaacacttttctataaaaggctact
ggggattcaatagggtctcgtacatgctgagcaagctctctcaagaaacg
tttgaagaattaatcaatttaaatatctaaccatgtttatcttatgtgtg
ccaatgtatacctaagattttcctatccagccgtcgtggtgcgcacgcct
ttaatccagcacttgggaggcggagcagtgatttctgagttcgaggccag
tctgtctatagagggagttccaggacagccaggctacacagaaccctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_86888174_86889260
seq2: B6Ng01-031D06.b_44_1121

seq1  GAATTCACTATATACCAGAGGATAGAGTCTTCGACTTCAGGTTCTTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATATACCAGAGGATAGAGTCTTCGACTTCAGGTTCTTCTAC  50

seq1  CTCAGCCTCCAGAGTGTTGGGATGGTAGGCAAGCCCAGCTGTGGATCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCTCCAGAGTGTTGGGATGGTAGGCAAGCCCAGCTGTGGATCGTA  100

seq1  TTTTATGCAAAGTAATTAGCCACAAAGGCTGTGGCTGTGGCTCAGTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCAAAGTAATTAGCCACAAAGGCTGTGGCTGTGGCTCAGTTGTA  150

seq1  AAGCACTTTCCAAGCACATTCAAGGTTTGGATTTGTTTATTGAGACAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTTTCCAAGCACATTCAAGGTTTGGATTTGTTTATTGAGACAGGG  200

seq1  TGTCTCACTGTGTTGACTGTGTGCTGGCCTCTTGATTCACAGAGACCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACTGTGTTGACTGTGTGCTGGCCTCTTGATTCACAGAGACCAGT  250

seq1  TTGCCTCTGCCTTCTAAGTATTGGGATTCTTTTCTTTCCCTTTTCTCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTGCCTTCTAAGTATTGGGATTCTTTTCTTTCCCTTTTCTCCTC  300

seq1  TCTCCCTTCCTCTCTCCGTTCTCTCTCCCTCCCTTCCTGTCTCCTCCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTCCTCTCTCCGTTCTCTCTCCCTCCCTTCCTGTCTCCTCCCCC  350

seq1  CCGGCCCCCCCCCCCCTTAGAGACTGGGTCTCACTATGTACCGAGGCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCCCCCCCCCCCCTTAGAGACTGGGTCTCACTATGTACCGAGGCTGA  400

seq1  TCTGGAACTCGCTATGACAATAGGGCTAGAGATCCACTTGCGTCTGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACTCGCTATGACAATAGGGCTAGAGATCCACTTGCGTCTGCCTT  450

seq1  CCCTTAAGGCCAGGGGTTTGAGTCCCAGGACAATTGCAACAACAGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAAGGCCAGGGGTTTGAGTCCCAGGACAATTGCAACAACAGGCAGA  500

seq1  CTCACAGTATTGAGCTCCGGCTGGCTTCAAACTCCTAAGGGTGAAGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTATTGAGCTCCGGCTGGCTTCAAACTCCTAAGGGTGAAGCAGT  550

seq1  CTTTTGGTTTCATCCAGCTCATTAGCTGGAACTGCAGGCAAGGGTTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTTTCATCCAGCTCATTAGCTGGAACTGCAGGCAAGGGTTGCTG  600

seq1  CACCCGATCCTATCTCGTTTATTTATTTTTTATGCATTTACTTATTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGATCCTATCTCGTTTATTTATTTTTTATGCATTTACTTATTTCCT  650

seq1  GTGTAGTGTATGTGTGTGCACGTGTAAAGGCAGAGGACAACCTAAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTGTATGTGTGTGCACGTGTAAAGGCAGAGGACAACCTAAGGAGA  700

seq1  CCTAAGGTGGCAGCTCCTTTTCCCACTAAGCCATCTTGCTGGGTCAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGGTGGCAGCTCCTTTTCCCACTAAGCCATCTTGCTGGGTCAAGTG  750

seq1  GCAGCTTTTGGAAAGGTGGTAAACACTCTATTTCACAAACATTGGGACTA  800
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  GCAGCTTTTGGAAAGGTGGTAAACACTCTATTTCACAAACA-TGGGAC-A  798

seq1  AAATATCTAATCCTGTCAGGACACTATTTTAAATGTATCTGGGAAAATAG  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAATATCTAATCCTGTCAGGACACTATTTTAATTGTATCTGGGAAAATAG  848

seq1  GATCAATTACAATACACTACATTGGGTCTCAACTTATTTTGCACTTATCT  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GATCAATTACAATACACTACATTGGGTCTC-ACTTATTTTGCACTTATCT  897

seq1  AATTGATAGCATAATCACAATTGGTGATTGTCATATGCTGGGGAAAGTTA  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTGATAGCATAATCACAA-TGGTGATTGTCATATGCTGGGGAAAGTTA  946

seq1  CTATAGATTGGTGAGATTTAGCAAATTATTTCATAGAATAGGTATTTAAT  1000
      ||| ||||| |||||| |||||||||||||||||||||||||||||||| 
seq2  CTAAAGATT-GTGAGA-TTAGCAAATTATTTCATAGAATAGGTATTTAA-  993

seq1  TAAAGAACATTTAAGTCAGGCCTGAGGGTAC-AGGTCTGTAATCCCAGCA  1049
      |||||||| ||||||| | ||  ||||| || || |||||||||||| ||
seq2  TAAAGAAC-TTTAAGT-AAGCTCGAGGGAACAAGCTCTGTAATCCCACCA  1041

seq1  ACTCTGGAGGTTGAGGCAGTAGGATTGTAAAATCTAGG  1087
       |||||||||| ||||||||| || ||  |||||||||
seq2  CCTCTGGAGGTGGAGGCAGTA-GAATGATAAATCTAGG  1078

seq1: chr11_87008407_87009469
seq2: B6Ng01-031D06.g_67_1115 (reverse)

seq1  ACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTATAGAC  50
      |||||||   ||||||||| ||||||||||||||||||| ||||||||| 
seq2  ACAGGGT---TCTGTGTAG-CCTGGCTGTCCTGGAACTCCCTCTATAGA-  45

seq1  CAGACTGGCCTCGAACTCAGAAATCCACCTGCCTCCGCCTCCCAAGTGCT  100
      |||||||||||||||||||||||||   ||| ||||||||||||||||||
seq2  CAGACTGGCCTCGAACTCAGAAATC--ACTG-CTCCGCCTCCCAAGTGCT  92

seq1  GGGATTAAAGGCGTGCGCCACCACGACCGGCTGGATAGGAAAATTCTTAG  150
       |||||||||||||||| |||||||| |||||||||||||||| ||||||
seq2  -GGATTAAAGGCGTGCG-CACCACGA-CGGCTGGATAGGAAAA-TCTTAG  138

seq1  GTATAACATTGGCACACATAAGATAAACATGGTTAGATATTTAAATTGAT  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAT-ACATTGGCACACATAAGATAAACATGGTTAGATATTTAAATTGAT  187

seq1  TAATTCTTTCAAACGTTTCTTGAGAGAGCTTGCTCAGCATGTACGAGACC  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTC-TTCAAACGTTTCTTGAGAGAGCTTGCTCAGCATGTACGAGACC  236

seq1  CTATTGAATCCCCAGTAGCCTTTTATAGAAAAGTGTTTACTAATAATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGAATCCCCAGTAGCCTTTTATAGAAAAGTGTTTACTAATAATGGG  286

seq1  AAGCGGGTGCTGTTTTACTGTGTTGATTCCAAGGTATTAATTAAATGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGGTGCTGTTTTACTGTGTTGATTCCAAGGTATTAATTAAATGCCA  336

seq1  TCCATGTTTTTTTTTTAATTTTTTGCATTTTCTGTAGCTCTAAATGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTTTTTTTTTTAATTTTTTGCATTTTCTGTAGCTCTAAATGTTAA  386

seq1  AATTTAGATGGTTACCTTAGATGTTGAGGGTGTAATGTGAACAAAGACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGATGGTTACCTTAGATGTTGAGGGTGTAATGTGAACAAAGACCC  436

seq1  TTATTGTCATTGTTAAAGTTTGATGAAATTTTTTGACAAGCATTAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTCATTGTTAAAGTTTGATGAAATTTTTTGACAAGCATTAATGAA  486

seq1  TATAATGGCATATTTCTAGTTCCTGAGAATATGAGAAAGACTTGTGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATGGCATATTTCTAGTTCCTGAGAATATGAGAAAGACTTGTGTACT  536

seq1  TTATAACTAAAGGTGAATAGATAGAATAATTAGCTAAAATATGACGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTAAAGGTGAATAGATAGAATAATTAGCTAAAATATGACGATGT  586

seq1  ACCTATAGAATTCTAGGTCATTTTGGACAGACTCTTTCTTCAAAGAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATAGAATTCTAGGTCATTTTGGACAGACTCTTTCTTCAAAGAGGTT  636

seq1  CAGTATAATTCCCCATTCTTAAGTAAAGACTATGCTTGGGAAAACCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATAATTCCCCATTCTTAAGTAAAGACTATGCTTGGGAAAACCTGGC  686

seq1  TAGCAACACCTATGATAGCATCATCTGTGATAACATGTTCTGGTGTGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACACCTATGATAGCATCATCTGTGATAACATGTTCTGGTGTGTAA  736

seq1  AGAACATATCTATCTACCTCTGTAGTATTTAAATCAGAGAAGCCTTAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATATCTATCTACCTCTGTAGTATTTAAATCAGAGAAGCCTTAACT  786

seq1  CACAGAATTATCCAAATATAGACAACAGTCAGAAATCAGAGAAGCTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATTATCCAAATATAGACAACAGTCAGAAATCAGAGAAGCTTAAT  836

seq1  ATTCTTGATTAAACTCTAGAAGTTCTCGATTAAGTTCTAGAAGAGAACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGATTAAACTCTAGAAGTTCTCGATTAAGTTCTAGAAGAGAACAC  886

seq1  ACACATGTACACTTTGAAATATACCCTAGACAGTCAGGGCTACATAGAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTACACTTTGAAATATACCCTAGACAGTCAGGGCTACATAGAGA  936

seq1  GACACTATCTACCTTTCTTTAAAATGAATGAATGAATGGGAACGCTCGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTATCTACCTTTCTTTAAAATGAATGAATGAATGGGAACGCTCGTA  986

seq1  GGACTACTACATTTCTAGAGCAAACTCGAAAGTATTAGCATTTCTCATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTACTACATTTCTAGAGCAAACTCGAAAGTATTAGCATTTCTCATCA  1036

seq1  TAGTTTGGAATTC  1063
      |||||||||||||
seq2  TAGTTTGGAATTC  1049