BAC Information

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BAC

Clone NameB6Ng01-031I16
Chromosome11 (Build37)
Map Location 107,227,160 - 107,343,541
singlet/doubletdoublet
Overlap genePitpnc1, Psmd12
Upstream gene2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream geneA830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381, Ccdc46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031I16.bB6Ng01-031I16.g
ACCDH861124DH861125
length1,088979
definitionDH861124|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I16, 5' end.DH861125|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,227,160 - 107,228,280)(107,342,561 - 107,343,541)
sequence
gaattcttgccacccacctgtacaggtgggaagtctaggagtcactcctt
ggcgcctccctatcccaccagcatctgtagtctatttgccaacaacactc
cccctagacgcttatctgtctgggttgatgatcccgtcccttcccctcta
gatcccacaagaattcccaaacggagcagccaaatccattcttgtcgttc
tctgttcctatctaatcattgaatttgactttggcactgcttcctgacaa
atccctcccactactcacgaagccctgggcttcagagctggagaccctgt
ctttcaccttcggctcagggaagtgagtttgttctgtactttcctcttgt
agtgtttggacctgaagccgggacttgtacatagtgggcaaatgctctgc
cctgagctatgtgcccacagcttcttaaaggtttgtgtctcagccactca
gacttctggagcctcctgactttcacttccggggttttcactccgtgatc
tatataaatctggcctgctctctcctccgtccacacccctcttaaacttt
ccaaacaatccacaagctcccagcccttcctccccatctttagtgtcttt
tggggaaaggtcaagaaaggcaaggataggttatgactcctcacccatgc
atacgtcacttcctgacactcgctgtgcacaccaggatcctccttcctat
gttcccagcatccactgcccacctggggctctgccattagacacttctgt
cctggagccaatcccttccccgaatccctcacctcctaaattttcccacc
tcctctgcagcctgcactcttactcccccaaagccacccctcccctttcc
aatctaaaccaatccattccctggaaaggattatgctttcctaaatagca
gagaccgaggcagcctagtgacctaaaaagaattaaaagcagtaatcttc
tctatcatgatacgatttagtcatcggaaagagctgctagaataatcata
agccagggctcggccagttgttaccctgcatgggagccagcatcctgtta
cttactgaagccaggtgggttcggaaagcaaggccaag
gaattctgaagagcagcaaacgctcctaactgctgagccctacacctgac
gcatgcgtatcaagtgtctgcactgacaatttcaccttcaaattttcttt
cacatttgaaacaaacaatgtctgaagggaaattaagtgcagatgaccct
ttaaacaggaaatgagatatagcaaaaattgacttcttgttgctaggaac
ctgagcatgattacccaaggataaaccattgaactttaagtctgctcaca
aatgaaaagaacaaaactttcttcatcgtaactaatgagctcaagataaa
aataaagcaatgtacactaaaatgttcatacaattctctaaagtagaact
gtagtgttaaggactcagcagcaagagcaagagcactggcctaatctcca
gtctggaaagggctggggagggaaagccatgctagaaacattaaaagcgc
tggaggttacagctcagtagagtgctggcccatcatatcctgggttcaat
ttctagcacctctcatcctcccccagagttagcccaggtgttttaaaaaa
ataaagcaaaattaaagaaatctaaaaaattaaccaggattatgagaaaa
tctgaaaattaaaactattgtcctagccagacggtggtggcacacgcctt
taatcccagcacaaaaaccaaaaccaaccaaacaaacagaaactattgtc
ctgtgtttcagggggaagagtccacctgcttcccagtcttcttttctgac
ccttaaacaagtgtaataaactcacacatacatatcccttgcttagcttc
acaagcacacagtcttcaaaagcaaacacacagaaagcccccacaattga
aacgtctcaattttaaccagttaaagggccagtctttgtttggagacatc
catttcccaatcatccgcccaggaaagcatctggcccttgggtggaactg
aactgtggcaacagaacaggactggcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_107227160_107228280
seq2: B6Ng01-031I16.b_44_1131

seq1  GAATTCTTGCCACCCACCTGTACAGGTGGGAAGTCTAGGAGTCACTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCACCCACCTGTACAGGTGGGAAGTCTAGGAGTCACTCCTT  50

seq1  GGCGCCTCCCTATCCCACCAGCATCTGTAGTCTATTTGCCAACAACACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCTCCCTATCCCACCAGCATCTGTAGTCTATTTGCCAACAACACTC  100

seq1  CCCCTAGACGCTTATCTGTCTGGGTTGATGATCCCGTCCCTTCCCCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGACGCTTATCTGTCTGGGTTGATGATCCCGTCCCTTCCCCTCTA  150

seq1  GATCCCACAAGAATTCCCAAACGGAGCAGCCAAATCCATTCTTGTCGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCACAAGAATTCCCAAACGGAGCAGCCAAATCCATTCTTGTCGTTC  200

seq1  TCTGTTCCTATCTAATCATTGAATTTGACTTTGGCACTGCTTCCTGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTATCTAATCATTGAATTTGACTTTGGCACTGCTTCCTGACAA  250

seq1  ATCCCTCCCACTACTCACGAAGCCCTGGGCTTCAGAGCTGGAGACCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCCCACTACTCACGAAGCCCTGGGCTTCAGAGCTGGAGACCCTGT  300

seq1  CTTTCACCTTCGGCTCAGGGAAGTGAGTTTGTTCTGTACTTTCCTCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCTTCGGCTCAGGGAAGTGAGTTTGTTCTGTACTTTCCTCTTGT  350

seq1  AGTGTTTGGACCTGAAGCCGGGACTTGTACATAGTGGGCAAATGCTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTGGACCTGAAGCCGGGACTTGTACATAGTGGGCAAATGCTCTGC  400

seq1  CCTGAGCTATGTGCCCACAGCTTCTTAAAGGTTTGTGTCTCAGCCACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTATGTGCCCACAGCTTCTTAAAGGTTTGTGTCTCAGCCACTCA  450

seq1  GACTTCTGGAGCCTCCTGACTTTCACTTCCGGGGTTTTCACTCCGTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTGGAGCCTCCTGACTTTCACTTCCGGGGTTTTCACTCCGTGATC  500

seq1  TATATAAATCTGGCCTGCTCTCTCCTCCGTCCACACCCCTCTTAAACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAATCTGGCCTGCTCTCTCCTCCGTCCACACCCCTCTTAAACTTT  550

seq1  CCAAACAATCCACAAGCTCCCAGCCCTTCCTCCCCATCTTTAGTGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAATCCACAAGCTCCCAGCCCTTCCTCCCCATCTTTAGTGTCTTT  600

seq1  TGGGGAAAGGTCAAGAAAGGCAAGGATAGGTTATGACTCCTCACCCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAGGTCAAGAAAGGCAAGGATAGGTTATGACTCCTCACCCATGC  650

seq1  ATACGTCACTTCCTGACACTCGCTGTGCACACCAGGATCCTCCTTCCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTCACTTCCTGACACTCGCTGTGCACACCAGGATCCTCCTTCCTAT  700

seq1  GTTCCCAGCATCCACTGCCCACCTGGGGCTCTGCCATTAGACACTTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAGCATCCACTGCCCACCTGGGGCTCTGCCATTAGACACTTCTGT  750

seq1  CCTGGAGCCAATCCCTTCCCCGAATCCCTCACCTCCTAAATTTTCCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCCAATCCCTTCCCCGAATCCCTCACCTCCTAAATTTTCCCACC  800

seq1  TCCTCTGCAGCCTGCACTCTTACTCCCCCAAAGCCACCCCTCCCCTTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGCAGCCTGCACTCTTACTCCCCCAAAGCCACCCCTCCCCTTTCC  850

seq1  AATCTAAACCAATCCATTCCCTGGAAAGGATTATGCTTTCCTAAATAGCC  900
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATCTAAACCAATCCATTCCCTGGAAAGGATTATGCTTTCCTAAATAG-C  899

seq1  AGAGAACCGAGGCCAGCCTAGTGACCTAAAAAAGAAATTTAAAAAGCAGT  950
      |||| ||||||| |||||||||||||| ||||||||   | |||||||||
seq2  AGAG-ACCGAGG-CAGCCTAGTGACCT-AAAAAGAA---TTAAAAGCAGT  943

seq1  AAATCCTTCCTCTATCATTGATTACGATTTTAAGTCATCGGAGAAGAAGC  1000
       ||||  | |||||||| ||| ||||||||  |||||||||| ||||   
seq2  -AATC--TTCTCTATCA-TGA-TACGATTT--AGTCATCGGA-AAGA--G  983

seq1  CTGCTAAGGAATAATTCATAAGCCCAGGGCTCGGCCAGGGTTGTTTACCC  1050
      ||||||  |||||| ||||||| ||||||||||||||  |||| ||||||
seq2  CTGCTA--GAATAA-TCATAAG-CCAGGGCTCGGCCA--GTTG-TTACCC  1026

seq1  TGGCATGGGAGCCAGCATCCTGTTACTTTACTGACAGCCCAGGTGGGGTT  1100
      | |||||||||||||||||||||||| ||||||| || |||||| |||||
seq2  T-GCATGGGAGCCAGCATCCTGTTAC-TTACTGA-AG-CCAGGT-GGGTT  1071

seq1  CGGAGAGCGCAGAAGGCCAAG  1121
      |||| |||    |||||||||
seq2  CGGAAAGC----AAGGCCAAG  1088

seq1: chr11_107342561_107343541
seq2: B6Ng01-031I16.g_65_1043 (reverse)

seq1  AAGGCCAGTCCTGTTCTGTATGCCACAGTTCAGTTCCACTCAAGGGCCAG  50
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  AAGGCCAGTCCTGTTCTGT-TGCCACAGTTCAGTTCCACCCAAGGGCCAG  49

seq1  ATGCTTTCCTGGGCGGATGA-TGGGAAATGGATGTCTCCAAACAAAGACT  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATGCTTTCCTGGGCGGATGATTGGGAAATGGATGTCTCCAAACAAAGACT  99

seq1  GGGCCTTTAAACTGGTTAAAAATGGAGACGTTTCAATTGTGGGGGC-TTC  148
      || ||||| |||||||| ||||| |||||||||||||||||||||| |||
seq2  GGCCCTTT-AACTGGTT-AAAATTGAGACGTTTCAATTGTGGGGGCTTTC  147

seq1  TGTGTGTGTTGCTTTTGAAGACTGTGTGCTTGTGAAGCTAAGCAAGGGAT  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGT-TTGCTTTTGAAGACTGTGTGCTTGTGAAGCTAAGCAAGGGAT  196

seq1  ATGTATGTGTGAGTTTATTACACTTGTTTAAGGGTCAGAAAAGAAGACTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTGTGAGTTTATTACACTTGTTTAAGGGTCAGAAAAGAAGACTG  246

seq1  GGAAGCAGGTGGACTCTTCCCCCTGAAACACAGGACAATAGTTTCTGTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAGGTGGACTCTTCCCCCTGAAACACAGGACAATAGTTTCTGTTT  296

seq1  GTTTGGTTGGTTTTGGTTTTTGTGCTGGGATTAAAGGCGTGTGCCACCAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTTGGTTTTGGTTTTTGTGCTGGGATTAAAGGCGTGTGCCACCAC  346

seq1  CGTCTGGCTAGGACAATAGTTTTAATTTTCAGATTTTCTCATAATCCTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGGCTAGGACAATAGTTTTAATTTTCAGATTTTCTCATAATCCTGG  396

seq1  TTAATTTTTTAGATTTCTTTAATTTTGCTTTATTTTTTTAAAACACCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTTAGATTTCTTTAATTTTGCTTTATTTTTTTAAAACACCTGG  446

seq1  GCTAACTCTGGGGGAGGATGAGAGGTGCTAGAAATTGAACCCAGGATATG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTCTGGGGGAGGATGAGAGGTGCTAGAAATTGAACCCAGGATATG  496

seq1  ATGGGCCAGCACTCTACTGAGCTGTAACCTCCAGCGCTTTTAATGTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCCAGCACTCTACTGAGCTGTAACCTCCAGCGCTTTTAATGTTTCT  546

seq1  AGCATGGCTTTCCCTCCCCAGCCCTTTCCAGACTGGAGATTAGGCCAGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCTTTCCCTCCCCAGCCCTTTCCAGACTGGAGATTAGGCCAGTG  596

seq1  CTCTTGCTCTTGCTGCTGAGTCCTTAACACTACAGTTCTACTTTAGAGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTCTTGCTGCTGAGTCCTTAACACTACAGTTCTACTTTAGAGAA  646

seq1  TTGTATGAACATTTTAGTGTACATTGCTTTATTTTTATCTTGAGCTCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAACATTTTAGTGTACATTGCTTTATTTTTATCTTGAGCTCATT  696

seq1  AGTTACGATGAAGAAAGTTTTGTTCTTTTCATTTGTGAGCAGACTTAAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACGATGAAGAAAGTTTTGTTCTTTTCATTTGTGAGCAGACTTAAAG  746

seq1  TTCAATGGTTTATCCTTGGGTAATCATGCTCAGGTTCCTAGCAACAAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGGTTTATCCTTGGGTAATCATGCTCAGGTTCCTAGCAACAAGAA  796

seq1  GTCAATTTTTGCTATATCTCATTTCCTGTTTAAAGGGTCATCTGCACTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATTTTTGCTATATCTCATTTCCTGTTTAAAGGGTCATCTGCACTTA  846

seq1  ATTTCCCTTCAGACATTGTTTGTTTCAAATGTGAAAGAAAATTTGAAGGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTTCAGACATTGTTTGTTTCAAATGTGAAAGAAAATTTGAAGGT  896

seq1  GAAATTGTCAGTGCAGACACTTGATACGCATGCGTCAGGTGTAGGGCTCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTCAGTGCAGACACTTGATACGCATGCGTCAGGTGTAGGGCTCA  946

seq1  GCAGTTAGGAGCGTTTGCTGCTCTTCAGAATTC  981
      |||||||||||||||||||||||||||||||||
seq2  GCAGTTAGGAGCGTTTGCTGCTCTTCAGAATTC  979