BAC Information

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BAC

Clone NameB6Ng01-031K17
Chromosome11 (Build37)
Map Location 66,244,685 - 66,434,868
singlet/doubletdoublet
Overlap geneGm879, LOC668323
Upstream geneMap2k4, Zkscan6, Dnahc9
Downstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13, Gas7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031K17.bB6Ng01-031K17.g
ACCDH861217DH861218
length1,0871,025
definitionDH861217|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K17, 5' end.DH861218|Mus musculus domesticus DNA, BAC clone: B6Ng01-031K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,244,685 - 66,245,795)(66,433,820 - 66,434,868)
sequence
gaattcattttctaacgtatgcattttgagagagccacactaggacagta
acagtgactccagcagactccatgtatctttaggtaaagtactcgatgaa
caaactcaaaaagaaacctgccattttgcacttgaatcaatacatttata
aataagtcaaattcatttatagtgaaccaaatatattgagctggcatttt
tcagaaaagaagaacgtattgaactttaattaataaaactaagtttttaa
ttctagtgttattgtagagggataacaggtcagtatctttagtcctaaca
atgatttctattgggctaactacctggaggttactataacttctagacaa
acatagtaaaataaaagttaaattatttgaaaacagtatatagggaaaga
tcaaaagtaggcagaaactggaagggtcaactcttgaataaagagaacca
tatctggttaaatatgaatttatatagtgtgtctcaacagaaaaatcata
caacacgtttctgtgagttgcacaatgcacatggatgggaacatttagaa
ttcaatcttggtgccaaagtatcattcctgaatcagatgagggagtctgc
tgcttttagaagggctaaaaaacaaaaagaaatttctggaaatgagggga
tcatgtgaggtgaaaacctcaaaacctgtacttacactccttcaaacgct
ccattgacttctgagagtgggagagagaagcaagaattacaaagcgaaag
agtcaagaagagatgccagtggctacaaccttgagtcccaggttagataa
actcaacacacaaattaaagttttaaacacagatcaaggagatcatacct
tagaacagaacacatctcagacccaggagcttactctgatatttaagcta
gtcccaagagactctccatccaaagagaacaaatcagcacttgagagtca
taatccatcagtcatctagcaactgctacaaagtcgcacacccttccaat
gtaaaacacaacacaatctctaccaataatatgacacatattgaagagaa
gcaatgactgatttggaataaattaaagagactttaa
gaattctccgaggctgtgagccagtcatcactaatcagtactaatgaaga
aaacccctccaccattgggagccatgctccaatttgctgagccccagtag
aacaaaaagcatagtgggctggggggctttcactccttttccttgtgcag
atgtcatgtccatcttttcctgtcctcagacacagatgctcctggctctc
cacctctcgggtagtatgtcctagggtctctcggtcagtgggctcctgtc
tacattttctctttggtgtctatctggtcctagatcctattggatcccat
tttcaggaaaacgcctaccaatacagatcctaaaattacacaaggcatgg
tgggaagcaggtcaccaagaatgcataataagaataagactggaattggg
aaggacaggaaataaagcaagaaactgatgctggggaaaagcttccaaat
actccagacccacccacccctactcccaccccacccccgctgcctttttt
tctttctagaaaaaagttaaaatccaagggatgtgttccaaactaatctg
agtagttacacacacacacacacacacacacacacacacacacacacaca
cacacacacacggggagagacagagagagagagagagagagacagagaga
gagagacagagagagagagacaaagagacagagacagacagagacagaca
gagacagacatagagacagacagacagagagacacagagaggcacagaga
ccgagagacacatagagagactgtagtctcccctcccccagccgaaacct
gcttgctcaggggtggagcttcctgctctttcgtctgccaccccactgct
ggaacctgcggagcacacacgtgcccttctacggacagagatatcggcgg
gaatcgggcccctcccctttcttctacaagtgtccaccacaaatttgagc
ctgatcagatactgtcttgcacaatccttttgctcgcacctagccctctt
cctccagattccaaaaagcctttcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_66244685_66245795
seq2: B6Ng01-031K17.b_44_1130

seq1  GAATTCATTTTCTAACGTATGCATTTTGAGAGAGCCACACTAGGACAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTCTAACGTATGCATTTTGAGAGAGCCACACTAGGACAGTA  50

seq1  ACAGTGACTCCAGCAGACTCCATGTATCTTTAGGTAAAGTACTCGATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGACTCCAGCAGACTCCATGTATCTTTAGGTAAAGTACTCGATGAA  100

seq1  CAAACTCAAAAAGAAACCTGCCATTTTGCACTTGAATCAATACATTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAAAAAGAAACCTGCCATTTTGCACTTGAATCAATACATTTATA  150

seq1  AATAAGTCAAATTCATTTATAGTGAACCAAATATATTGAGCTGGCATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTCAAATTCATTTATAGTGAACCAAATATATTGAGCTGGCATTTT  200

seq1  TCAGAAAAGAAGAACGTATTGAACTTTAATTAATAAAACTAAGTTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAGAAGAACGTATTGAACTTTAATTAATAAAACTAAGTTTTTAA  250

seq1  TTCTAGTGTTATTGTAGAGGGATAACAGGTCAGTATCTTTAGTCCTAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTGTTATTGTAGAGGGATAACAGGTCAGTATCTTTAGTCCTAACA  300

seq1  ATGATTTCTATTGGGCTAACTACCTGGAGGTTACTATAACTTCTAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCTATTGGGCTAACTACCTGGAGGTTACTATAACTTCTAGACAA  350

seq1  ACATAGTAAAATAAAAGTTAAATTATTTGAAAACAGTATATAGGGAAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTAAAATAAAAGTTAAATTATTTGAAAACAGTATATAGGGAAAGA  400

seq1  TCAAAAGTAGGCAGAAACTGGAAGGGTCAACTCTTGAATAAAGAGAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTAGGCAGAAACTGGAAGGGTCAACTCTTGAATAAAGAGAACCA  450

seq1  TATCTGGTTAAATATGAATTTATATAGTGTGTCTCAACAGAAAAATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGTTAAATATGAATTTATATAGTGTGTCTCAACAGAAAAATCATA  500

seq1  CAACACGTTTCTGTGAGTTGCACAATGCACATGGATGGGAACATTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACGTTTCTGTGAGTTGCACAATGCACATGGATGGGAACATTTAGAA  550

seq1  TTCAATCTTGGTGCCAAAGTATCATTCCTGAATCAGATGAGGGAGTCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCTTGGTGCCAAAGTATCATTCCTGAATCAGATGAGGGAGTCTGC  600

seq1  TGCTTTTAGAAGGGCTAAAAAACAAAAAGAAATTTCTGGAAATGAGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAGAAGGGCTAAAAAACAAAAAGAAATTTCTGGAAATGAGGGGA  650

seq1  TCATGTGAGGTGAAAACCTCAAAACCTGTACTTACACTCCTTCAAACGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGAGGTGAAAACCTCAAAACCTGTACTTACACTCCTTCAAACGCT  700

seq1  CCATTGACTTCTGAGAGTGGGAGAGAGAAGCAAGAATTACAAAGCGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGACTTCTGAGAGTGGGAGAGAGAAGCAAGAATTACAAAGCGAAAG  750

seq1  AGTCAAGAAGAGATGCCAGTGGCTACAACCTTGAGTCCCAGGTTAGATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGAAGAGATGCCAGTGGCTACAACCTTGAGTCCCAGGTTAGATAA  800

seq1  ACTCAACACACAAATTAAAGTTTTAAACACAGATCAAGGAGATCATACCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACACACAAATTAAAGTTTTAAACACAGATCAAGGAGATCATACCT  850

seq1  TAGAAACAGAACACATCTCAGAACCAAGGAGCTTACTCTGATATTTAAGG  900
      ||| ||||||||||||||||| ||| |||||||||||||||||||||| |
seq2  TAG-AACAGAACACATCTCAG-ACCCAGGAGCTTACTCTGATATTTAA-G  897

seq1  CTAGTCCCCAAAGAGACCTCTCCATCCAAAGAGAACAAAATCAAGCACTT  950
      ||||||||  |||||| ||||||||||||||||||| ||||| |||||||
seq2  CTAGTCCC--AAGAGA-CTCTCCATCCAAAGAGAAC-AAATC-AGCACTT  942

seq1  GAGAAGTCATAATCCATCAGTCATCTAAGCAACTGCTAACAAAAGTCGCA  1000
      ||| |||||||||||||||||||||| |||||||||||   |||||||| 
seq2  GAG-AGTCATAATCCATCAGTCATCT-AGCAACTGCTA--CAAAGTCGC-  987

seq1  ACACCCTTCCAAATGTAAAAACACAACACAAAATCTCTACACAATAAATA  1050
      |||||||||| ||||| ||||||||||||  ||||||||| |||| ||||
seq2  ACACCCTTCC-AATGT-AAAACACAACAC--AATCTCTAC-CAAT-AATA  1031

seq1  TGACACATATTGAAGAGAAGCACATGACTTGATTTTTGGAATAATATAAA  1100
      |||||||||||||||||||||| ||||| |||  ||||||||||  ||||
seq2  TGACACATATTGAAGAGAAGCA-ATGAC-TGA--TTTGGAATAAATTAAA  1077

seq1  GAGAACTTTAA  1111
      ||| |||||||
seq2  GAG-ACTTTAA  1087

seq1: chr11_66433820_66434868
seq2: B6Ng01-031K17.g_67_1090 (reverse)

seq1  GAAAGGCATTTTGGAAACCTGGAAGAGAAGAGGGGCTAGGTGGCGAGAGA  50
      ||||||| |||||| || |||||   ||||| ||||||||| |||||  |
seq2  GAAAGGCTTTTTGG-AATCTGGA--GGAAGA-GGGCTAGGT-GCGAGCAA  45

seq1  AAAGAATGTAGCCAAGACAGTTATTCTGATCAAGGCTCAAATTTTATTGT  100
      || || |||   |||||||||   ||||||| ||||||||||||   || 
seq2  AAGGATTGT--GCAAGACAGT--ATCTGATC-AGGCTCAAATTT--GTGG  88

seq1  TGCGACACTAGTTATGAAGGAAGGGGGAGGGGACCCGATTCCCGCCGAAT  150
      || |||||| ||   ||| ||| ||||||||| |||||||||||||||  
seq2  TG-GACACTTGT--AGAA-GAAAGGGGAGGGG-CCCGATTCCCGCCGA--  131

seq1  AATCTCTGGTCCAGTAGAAAGGTGCACGTGTGTGGCTCCGCAGGTTCCAG  200
       |||||| |||| ||||||  | |||||||||| ||||||||||||||||
seq2  TATCTCT-GTCC-GTAGAA--GGGCACGTGTGT-GCTCCGCAGGTTCCAG  176

seq1  CAGTGGGCGTGGCAGAACGAATGAGCAGGAAGCTCCACCCCTGAGCAAGC  250
      ||||||| ||||||| ||||| ||||||||||||||||||||||||||||
seq2  CAGTGGG-GTGGCAG-ACGAAAGAGCAGGAAGCTCCACCCCTGAGCAAGC  224

seq1  AGGTTTCAGGCTGGGGGAGGGGAGACTACAGTCTCTCTCTGTGTCTCTCT  300
      ||||||| |||||||||||||||||||||||||||||| |||||||||| 
seq2  AGGTTTC-GGCTGGGGGAGGGGAGACTACAGTCTCTCTATGTGTCTCTCG  273

seq1  GTCTCTGTGCCTCTCTGTGTCTCTCTGTCTGTCTGTCTCTCTGTCTGTCT  350
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCTCTGTGCCTCTCTGTGTCTCTCTGTCTGTCTGTCTCTATGTCTGTCT  323

seq1  CTGTCTGTCTCTGTCTGTCTCTGTCTCTTTGTCTCTCTCTCTCTGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGTCTCTGTCTGTCTCTGTCTCTTTGTCTCTCTCTCTCTGTCTCT  373

seq1  CTCTCTCTGTCTCTCTCTCTCTCTCTCTCTGTCTCTCCCC--GTGTGTGT  448
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  CTCTCTCTGTCTCTCTCTCTCTCTCTCTCTGTCTCTCCCCGTGTGTGTGT  423

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTAC  473

seq1  TCAGATTAGTTTGGAACACATCCCTTGGATTTTAACTTTTTTCTAGAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTAGTTTGGAACACATCCCTTGGATTTTAACTTTTTTCTAGAAAG  523

seq1  AAAAAAAGGCAGCGGGGGTGGGGTGGGAGTAGGGGTGGGTGGGTCTGGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGCAGCGGGGGTGGGGTGGGAGTAGGGGTGGGTGGGTCTGGAG  573

seq1  TATTTGGAAGCTTTTCCCCAGCATCAGTTTCTTGCTTTATTTCCTGTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAAGCTTTTCCCCAGCATCAGTTTCTTGCTTTATTTCCTGTCCT  623

seq1  TCCCAATTCCAGTCTTATTCTTATTATGCATTCTTGGTGACCTGCTTCCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATTCCAGTCTTATTCTTATTATGCATTCTTGGTGACCTGCTTCCC  673

seq1  ACCATGCCTTGTGTAATTTTAGGATCTGTATTGGTAGGCGTTTTCCTGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCCTTGTGTAATTTTAGGATCTGTATTGGTAGGCGTTTTCCTGAA  723

seq1  AATGGGATCCAATAGGATCTAGGACCAGATAGACACCAAAGAGAAAATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATCCAATAGGATCTAGGACCAGATAGACACCAAAGAGAAAATGT  773

seq1  AGACAGGAGCCCACTGACCGAGAGACCCTAGGACATACTACCCGAGAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGAGCCCACTGACCGAGAGACCCTAGGACATACTACCCGAGAGGT  823

seq1  GGAGAGCCAGGAGCATCTGTGTCTGAGGACAGGAAAAGATGGACATGACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCCAGGAGCATCTGTGTCTGAGGACAGGAAAAGATGGACATGACA  873

seq1  TCTGCACAAGGAAAAGGAGTGAAAGCCCCCCAGCCCACTATGCTTTTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAAGGAAAAGGAGTGAAAGCCCCCCAGCCCACTATGCTTTTTGT  923

seq1  TCTACTGGGGCTCAGCAAATTGGAGCATGGCTCCCAATGGTGGAGGGGTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGGGCTCAGCAAATTGGAGCATGGCTCCCAATGGTGGAGGGGTT  973

seq1  TTCTTCATTAGTACTGATTAGTGATGACTGGCTCACAGCCTCGGAGAATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATTAGTACTGATTAGTGATGACTGGCTCACAGCCTCGGAGAATT  1023

seq1  C  1049
      |
seq2  C  1024