BAC Information

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BAC

Clone NameB6Ng01-031M01
Chromosome11 (Build37)
Map Location 22,923,828 - 23,042,111
singlet/doubletdoublet
Overlap geneLOC100042875
Upstream geneEhbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2, 9130230N09Rik, Commd1, Zrsr1, Cct4, 4930430E16Rik
Downstream geneXpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031M01.bB6Ng01-031M01.g
ACCDH861279DH861280
length8931,062
definitionDH861279|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M01, 5' end.DH861280|Mus musculus domesticus DNA, BAC clone: B6Ng01-031M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,923,828 - 22,924,720)(23,041,035 - 23,042,111)
sequence
gaattcaaccactgggtgtatgaccattgtatgcaacatagtgagaccgt
ctcttaaaagcactttaaattgggtatttcgttagttacttagttagatt
acttgtgtgtgagtgttttgtgtaggcaccatgtgcatttctacccacag
acatcagaggtattggataccgtagaactatagttgtgagctaccatgtg
agtgctgggaattgaacctaagccctctatagaaataagtgctcttaact
actgagccatctcaaggcctaaaagcattaaaaaaccaaagcaaatctct
ctgcttcaccatcctccttagcacggtccttcctcccgtggaggcctttc
actcccaagttcaatggtgatctcaagggggtctcatgattaacctcccc
agtcgtattgcctcaggatgggggtgggtaatcatatcacagatggaaag
actcaagttcaaaggaggtgagtagtgaggtgtatggttagtaaatggta
aagctaggatcagaacccacgctgatctgcttcccttaatcctttcacaa
aagaggaacttgtaagccacagagcagtatataaggcccctccgtgcttt
gtgtcaaccttgatttttgagacttggtctcaagattctcagccccaaac
tcctgcatagccaaggtgaacttgtttgtaactcctgcctttaccttcta
agtgcagtgcaggagttattggtgtgtgccaccacaactggtttttagtg
gtgctagggatgggaattctcgaagctgggaatacacccacatccgtacc
caccatgctccagccccagcctccctgtgggcttctcagggcattctcca
ctccctctcctaacgctttgcctgctcatttgtctccttactg
gaattccacctctgctcccaattattctgggtaccaggaactttctaagc
ccccccaccctctcgcccccaccccccgggagctgcttgctgaaggcaag
aggattggatgttaaagattggaatattcttccagctgcgctagtccgtg
ctgcttgtcaggaagaacatttagcatccacaaatggcataaatcgtgct
gaacatgaagagctggttaatgccttcgtcgcagtggctcgtacgcaaac
tccgtgtacttaaatcatggtggtccctcagctgagtgactgaggaggct
ctcacagggttgagtaaagcgctcttatttgcaggacccctgagaaggaa
agcgacaggcagtgcagatgccctgaaattgtcctaaggtgcccttagca
actgctgggaacagtacaacacactggaggttagagtctaagttccttcc
cagtgctcagtccctgcatacaccctgtgctgtacgtaaactaagtactg
tgtaccagatgtctgagacagtctttcaaggcctctaagtcctctagctc
ctccctttcaatttctttcagttttctgttcctgaacctgtctctccaga
actcgtatggcacacatagatactcataaacgtctcaaggataatactac
gctgtgagaaaggtcacagcccttgctgccaacaaacacaacccagctgg
ctgcagtagtggaaatgtacaaatgccctgtcactgtaagagctgctgct
ccttcgggactttcaaactgtgtagtaattcttatagagaaaagcgctta
attcttcacctttctgcaaagcgcgctattgatcaaggttgttgaaagtt
aacagttaatttcacacactgctacagtttactttggaacacagtcatcg
gatctcattttttactgtgtgaaatccctgctatgctatatcgcaaccta
gctcaacctgtgcagtagaatctaagaatgttctctgattatgagattta
gtgtgtggggtgttatggaaacacaaatctaatgattgttgaaagatcag
gcaaagggtcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_22923828_22924720
seq2: B6Ng01-031M01.b_30_922

seq1  GAATTCAACCACTGGGTGTATGACCATTGTATGCAACATAGTGAGACCGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCACTGGGTGTATGACCATTGTATGCAACATAGTGAGACCGT  50

seq1  CTCTTAAAAGCACTTTAAATTGGGTATTTCGTTAGTTACTTAGTTAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAAAGCACTTTAAATTGGGTATTTCGTTAGTTACTTAGTTAGATT  100

seq1  ACTTGTGTGTGAGTGTTTTGTGTAGGCACCATGTGCATTTCTACCCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGTGTGAGTGTTTTGTGTAGGCACCATGTGCATTTCTACCCACAG  150

seq1  ACATCAGAGGTATTGGATACCGTAGAACTATAGTTGTGAGCTACCATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGAGGTATTGGATACCGTAGAACTATAGTTGTGAGCTACCATGTG  200

seq1  AGTGCTGGGAATTGAACCTAAGCCCTCTATAGAAATAAGTGCTCTTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGAATTGAACCTAAGCCCTCTATAGAAATAAGTGCTCTTAACT  250

seq1  ACTGAGCCATCTCAAGGCCTAAAAGCATTAAAAAACCAAAGCAAATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATCTCAAGGCCTAAAAGCATTAAAAAACCAAAGCAAATCTCT  300

seq1  CTGCTTCACCATCCTCCTTAGCACGGTCCTTCCTCCCGTGGAGGCCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCACCATCCTCCTTAGCACGGTCCTTCCTCCCGTGGAGGCCTTTC  350

seq1  ACTCCCAAGTTCAATGGTGATCTCAAGGGGGTCTCATGATTAACCTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAAGTTCAATGGTGATCTCAAGGGGGTCTCATGATTAACCTCCCC  400

seq1  AGTCGTATTGCCTCAGGATGGGGGTGGGTAATCATATCACAGATGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTATTGCCTCAGGATGGGGGTGGGTAATCATATCACAGATGGAAAG  450

seq1  ACTCAAGTTCAAAGGAGGTGAGTAGTGAGGTGTATGGTTAGTAAATGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGTTCAAAGGAGGTGAGTAGTGAGGTGTATGGTTAGTAAATGGTA  500

seq1  AAGCTAGGATCAGAACCCACGCTGATCTGCTTCCCTTAATCCTTTCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGGATCAGAACCCACGCTGATCTGCTTCCCTTAATCCTTTCACAA  550

seq1  AAGAGGAACTTGTAAGCCACAGAGCAGTATATAAGGCCCCTCCGTGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAACTTGTAAGCCACAGAGCAGTATATAAGGCCCCTCCGTGCTTT  600

seq1  GTGTCAACCTTGATTTTTGAGACTTGGTCTCAAGATTCTCAGCCCCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAACCTTGATTTTTGAGACTTGGTCTCAAGATTCTCAGCCCCAAAC  650

seq1  TCCTGCATAGCCAAGGTGAACTTGTTTGTAACTCCTGCCTTTACCTTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATAGCCAAGGTGAACTTGTTTGTAACTCCTGCCTTTACCTTCTA  700

seq1  AGTGCAGTGCAGGAGTTATTGGTGTGTGCCACCACAACTGGTTTTAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTGCAGTGCAGGAGTTATTGGTGTGTGCCACCACAACTGGTTTTTAGTG  750

seq1  GTGCTAGGGAT-GGAATTCTCGAAGCTGGGAATACACCCACATCCGCACC  799
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  GTGCTAGGGATGGGAATTCTCGAAGCTGGGAATACACCCACATCCGTACC  800

seq1  CACCATGCTCCAGCCCCAGCCTCCCTGTGGGCTTCTCA-GGCCTTCTCCA  848
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  CACCATGCTCCAGCCCCAGCCTCCCTGTGGGCTTCTCAGGGCATTCTCCA  850

seq1  CTCCCTCTCCCTAGCGCTTTGCCTGCTCATTTGTCTCCCTTACTG  893
      |||||||| |||| |||||||||||||||||||||| ||||||||
seq2  CTCCCTCT-CCTAACGCTTTGCCTGCTCATTTGTCT-CCTTACTG  893

seq1: chr11_23041035_23042111
seq2: B6Ng01-031M01.g_65_1126 (reverse)

seq1  CTGACCCTTTGCCTAGATCTTTCAAAACAATCATTAGATTTGTGTTTTCC  50
      |||||||||||||| ||||||||  ||||||||||||||||||| |||||
seq2  CTGACCCTTTGCCT-GATCTTTC--AACAATCATTAGATTTGTG-TTTCC  46

seq1  ATAACA-CACACACACTAAATCTCATAATCAGGAGAAACAATTCTTAGAA  99
      |||||| | |||||||||||||||||||||| |||||   |||||||| |
seq2  ATAACACCCCACACACTAAATCTCATAATCA-GAGAA--CATTCTTAG-A  92

seq1  TTCTAACTGGCACAGGTTGAGCTTAGGTTTGCGATAATAGCATAGCAGGG  149
      |||| ||| ||||||||||||| |||| ||||||| ||||||||||||||
seq2  TTCT-ACT-GCACAGGTTGAGC-TAGG-TTGCGAT-ATAGCATAGCAGGG  137

seq1  ATTTCACAACAGTAAAAAATGAGATCCGATGACTGTGGTTCCAAAAGTAA  199
      ||||||| |||||||||||||||||||||||||||| ||||| |||||||
seq2  ATTTCAC-ACAGTAAAAAATGAGATCCGATGACTGT-GTTCC-AAAGTAA  184

seq1  ACTGTAGCAGTGTGTGGAATTAACTGTTAACTTTCAACAACCTTGATCAA  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACTGTAGCAGTGTGTGAAATTAACTGTTAACTTTCAACAACCTTGATCAA  234

seq1  TAGCGCGCTTTGCAGAAAGGTGAAGAATTAAGCGCTTTTTCTCTATAAGA  299
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCGCGCTTTGCAGAAAGGTGAAGAATTAAGCGC-TTTTCTCTATAAGA  283

seq1  ATTACTACACAGTTTG-AAGTCCCGAAGGAGCAGCAGCTCTTACAGTGAC  348
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATTACTACACAGTTTGAAAGTCCCGAAGGAGCAGCAGCTCTTACAGTGAC  333

seq1  AGGGCATTTGTACATTTCCACTACTGCAGCCAGCTGGGTTGTGTTTGTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATTTGTACATTTCCACTACTGCAGCCAGCTGGGTTGTGTTTGTTG  383

seq1  GCAGCAAGGGCTGTGACCTTTCTCACAGCGTAGTATTATCCTTGAGACGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGGGCTGTGACCTTTCTCACAGCGTAGTATTATCCTTGAGACGT  433

seq1  TTATGAGTATCTATGTGTGCCATACGAGTTCTGGAGAGACAGGTTCAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAGTATCTATGTGTGCCATACGAGTTCTGGAGAGACAGGTTCAGGA  483

seq1  ACAGAAAACTGAAAGAAATTGAAAGGGAGGAGCTAGAGGACTTAGAGGCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACTGAAAGAAATTGAAAGGGAGGAGCTAGAGGACTTAGAGGCC  533

seq1  TTGAAAGACTGTCTCAGACATCTGGTACACAGTACTTAGTTTACGTACAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGACTGTCTCAGACATCTGGTACACAGTACTTAGTTTACGTACAG  583

seq1  CACAGGGTGTATGCAGGGACTGAGCACTGGGAAGGAACTTAGACTCTAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTGTATGCAGGGACTGAGCACTGGGAAGGAACTTAGACTCTAAC  633

seq1  CTCCAGTGTGTTGTACTGTTCCCAGCAGTTGCTAAGGGCACCTTAGGACA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGTGTTGTACTGTTCCCAGCAGTTGCTAAGGGCACCTTAGGACA  683

seq1  ATTTCAGGGCATCTGCACTGCCTGTCGCTTTCCTTCTCAGGGGTCCTGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGGGCATCTGCACTGCCTGTCGCTTTCCTTCTCAGGGGTCCTGCA  733

seq1  AATAAGAGCGCTTTACTCAACCCTGTGAGAGCCTCCTCAGTCACTCAGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGCGCTTTACTCAACCCTGTGAGAGCCTCCTCAGTCACTCAGCT  783

seq1  GAGGGACCACCATGATTTAAGTACACGGAGTTTGCGTACGAGCCACTGCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACCACCATGATTTAAGTACACGGAGTTTGCGTACGAGCCACTGCG  833

seq1  ACGAAGGCATTAACCAGCTCTTCATGTTCAGCACGATTTATGCCATTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGGCATTAACCAGCTCTTCATGTTCAGCACGATTTATGCCATTTGT  883

seq1  GGATGCTAAATGTTCTTCCTGACAAGCAGCACGGACTAGCGCAGCTGGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTAAATGTTCTTCCTGACAAGCAGCACGGACTAGCGCAGCTGGAA  933

seq1  GAATATTCCAATCTTTAACATCCAATCCTCTTGCCTTCAGCAAGCAGCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCCAATCTTTAACATCCAATCCTCTTGCCTTCAGCAAGCAGCTC  983

seq1  CCGGGGGGTGGGGGCGAGAGGGTGGGGGGGCTTAGAAAGTTCCTGGTACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGGGTGGGGGCGAGAGGGTGGGGGGGCTTAGAAAGTTCCTGGTACC  1033

seq1  CAGAATAATTGGGAGCAGAGGTGGAATTC  1077
      |||||||||||||||||||||||||||||
seq2  CAGAATAATTGGGAGCAGAGGTGGAATTC  1062