BAC Information

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BAC

Clone NameB6Ng01-032B07
Chromosome11 (Build37)
Map Location 33,436,131 - 33,597,989
singlet/doubletdoublet
Overlap geneGabrp, D130052B06Rik, Kcnip1
Upstream geneStk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269
Downstream geneKcnmb1, Lcp2, Foxi1, Dock2, EG574403, Dock2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032B07.bB6Ng01-032B07.g
ACCDH861518DH861519
length815613
definitionDH861518|Mus musculus domesticus DNA, BAC clone: B6Ng01-032B07, 5' end.DH861519|Mus musculus domesticus DNA, BAC clone: B6Ng01-032B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,436,131 - 33,436,944)(33,597,376 - 33,597,989)
sequence
gaattcaggtcccaccaggcctccttacttggatcctcctactctctgac
aatctaaaacaatctaaacaatccaaactaaacttggcttctgaaaattg
gctgacagagcaagggcttgtttaatttgagttttggacacaatttgtgg
cagctccattattgacacatgggggacttagctctgtcctgtttatataa
cagtagttgatagatagtgacttcatagttggatatttatgagagctttc
atttcaaataatatagttttggcctttggcaatgttaaggctcttacctc
ttattatggagaagctaaatctttgggatattgtaactgtaactgcaggg
tccctttgatctacctggaagaactgcaaaagttaatatttttgaaagca
atggaagctttattataaaaagtctcattgggaagttatctgtccctaaa
acatataggctcccagaaggtcagatggataaaagagcaacttttcatcg
tctttttccccttatgattcctatcccataacaaggtaatttaaaaggag
cagcagggagggaggtgggagtctctagctttcctttagagaaacctagt
accttgtcctccagctaggtcccagttctgaggaaagctgctgccaaagt
ccattgttcatagttcaatgacaatagcctcatctgtgtctgtatgatgc
ttctgctgacaaatgctgtcccatccctgaaaacaacgactgtacttggg
gtgggccttcttcgctccggctctgagagcacatccctattcacagcatt
gaagatccttgtgat
gaattctttcctgtctttccactctgtggaattttagaatacttgggata
agatcaaccagtgcagagatatttgtgatttgttcctcagagaatttacc
aatgccctgactttaacaaggcagaatcccatgggaaggtatggccctcc
acatcaatgttagaattggactaccgttcactccatcatcctctatgctt
aatggcaaggcctttgtaggcgtgtcttctctctgctcccttctaacccc
tttgctgaggatcctcagctgacaggggcatcttccatccaacacaaatg
aaaggaccacagtatctcaccatgcttcatcttctgttaccacagagctc
cctgagcagaggagagacagaagcattatcactaccaagctacacaggag
tgagtgttgactatgcctgtgcacatcctgaattccaaaggccaacggag
ggttccgtttccccaaagccacatgcataagctccactgtagcccttgag
agagtaggttcaaaacagactccaccaagtccgtctcttgcttctcctct
gtctgggctccctcttcacctgcaggttccttccgggtcactggtttagg
gacttgatctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_33436131_33436944
seq2: B6Ng01-032B07.b_36_850

seq1  GAATTCAGGTCCCACCAGGCCTCCTTACTTGGATCCTCCTACTCTCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTCCCACCAGGCCTCCTTACTTGGATCCTCCTACTCTCTGAC  50

seq1  AATCTAAAACAATCTAAACAATCCAAACTAAACTTGGCTTCTGAAAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAAACAATCTAAACAATCCAAACTAAACTTGGCTTCTGAAAATTG  100

seq1  GCTGACAGAGCAAGGGCTTGTTTAATTTGAGTTTTGGACACAATTTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACAGAGCAAGGGCTTGTTTAATTTGAGTTTTGGACACAATTTGTGG  150

seq1  CAGCTCCATTATTGACACATGGGGGACTTAGCTCTGTCCTGTTTATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCATTATTGACACATGGGGGACTTAGCTCTGTCCTGTTTATATAA  200

seq1  CAGTAGTTGATAGATAGTGACTTCATAGTTGGATATTTATGAGAGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTGATAGATAGTGACTTCATAGTTGGATATTTATGAGAGCTTTC  250

seq1  ATTTCAAATAATATAGTTTTGGCCTTTGGCAATGTTAAGGCTCTTACCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAATAATATAGTTTTGGCCTTTGGCAATGTTAAGGCTCTTACCTC  300

seq1  TTATTATGGAGAAGCTAAATCTTTGGGATATTGTAACTGTAACTGCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGGAGAAGCTAAATCTTTGGGATATTGTAACTGTAACTGCAGGG  350

seq1  TCCCTTTGATCTACCTGGAAGAACTGCAAAAGTTAATATTTTTGAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGATCTACCTGGAAGAACTGCAAAAGTTAATATTTTTGAAAGCA  400

seq1  ATGGAAGCTTTATTATAAAAAGTCTCATTGGGAAGTTATCTGTCCCTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCTTTATTATAAAAAGTCTCATTGGGAAGTTATCTGTCCCTAAA  450

seq1  ACATATAGGCTCCCAGAAGGTCAGATGGATAAAAGAGCAACTTTTCATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATAGGCTCCCAGAAGGTCAGATGGATAAAAGAGCAACTTTTCATCG  500

seq1  TCTTTTTCCCCTTATGATTCCTATCCCATAACAAGGTAATTTAAAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCCCTTATGATTCCTATCCCATAACAAGGTAATTTAAAAGGAG  550

seq1  CAGCAGGGAGGGAGGTGGGAGTCTCTAGCTTTCCTTTAGAGAAACCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGAGGGAGGTGGGAGTCTCTAGCTTTCCTTTAGAGAAACCTAGT  600

seq1  ACCTTGTCCTCCAGCTAGGTCCCAGTTCTGAGGAAAGCTGCTGCCAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTCCTCCAGCTAGGTCCCAGTTCTGAGGAAAGCTGCTGCCAAAGT  650

seq1  CCATTGTTCATAGTTCAAGGACAATAGCCCCATCTGTGTCAGGTATGAGG  700
      |||||||||||||||||| |||||||||| ||||||||||  |||||| |
seq2  CCATTGTTCATAGTTCAATGACAATAGCCTCATCTGTGTC-TGTATGATG  699

seq1  CTTCTGCTGACAAATGCTGTCCCATCCCTGAAAACAACGACTGTACTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTGACAAATGCTGTCCCATCCCTGAAAACAACGACTGTACTTGG  749

seq1  GGT-GGCCTTCTTCGCTCCAGCTCTGAGAGCACAT-CCTATTCAACAGCA  798
      ||| ||||||||||||||| ||||||||||||||| ||||||| ||||||
seq2  GGTGGGCCTTCTTCGCTCCGGCTCTGAGAGCACATCCCTATTC-ACAGCA  798

seq1  TTG-AGATCCTTGGGAT  814
      ||| ||||||||| |||
seq2  TTGAAGATCCTTGTGAT  815

seq1: chr11_33597376_33597989
seq2: B6Ng01-032B07.g_68_680 (reverse)

seq1  TCCAGATCAAGTCCCTGAACCAGTGAACCCGGAAGGAACCTGCTGGTGAA  50
      |||||||||||||||| |||||||| ||||||||||||||||| ||||||
seq2  TCCAGATCAAGTCCCTAAACCAGTG-ACCCGGAAGGAACCTGCAGGTGAA  49

seq1  GAGGGAGCCCAGACAGAGGAGAAGCAAGAGACGGACTTGGTGGAGTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGCCCAGACAGAGGAGAAGCAAGAGACGGACTTGGTGGAGTCTGT  99

seq1  TTTGAACCTACTCTCTCAAGGGCTACAGTGGAGCTTATGCATGTGGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACCTACTCTCTCAAGGGCTACAGTGGAGCTTATGCATGTGGCTTT  149

seq1  GGGGAAACGGAACCCTCCGTTGGCCTTTGGAATTCAGGATGTGCACAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAACGGAACCCTCCGTTGGCCTTTGGAATTCAGGATGTGCACAGGC  199

seq1  ATAGTCAACACTCACTCCTGTGTAGCTTGGTAGTGATAATGCTTCTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCAACACTCACTCCTGTGTAGCTTGGTAGTGATAATGCTTCTGTCT  249

seq1  CTCCTCTGCTCAGGGAGCTCTGTGGTAACAGAAGATGAAGCATGGTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGCTCAGGGAGCTCTGTGGTAACAGAAGATGAAGCATGGTGAGA  299

seq1  TACTGTGGTCCTTTCATTTGTGTTGGATGGAAGATGCCCCTGTCAGCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGTCCTTTCATTTGTGTTGGATGGAAGATGCCCCTGTCAGCTGA  349

seq1  GGATCCTCAGCAAAGGGGTTAGAAGGGAGCAGAGAGAAGACACGCCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTCAGCAAAGGGGTTAGAAGGGAGCAGAGAGAAGACACGCCTACA  399

seq1  AAGGCCTTGCCATTAAGCATAGAGGATGATGGAGTGAACGGTAGTCCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTGCCATTAAGCATAGAGGATGATGGAGTGAACGGTAGTCCAAT  449

seq1  TCTAACATTGATGTGGAGGGCCATACCTTCCCATGGGATTCTGCCTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATTGATGTGGAGGGCCATACCTTCCCATGGGATTCTGCCTTGTT  499

seq1  AAAGTCAGGGCATTGGTAAATTCTCTGAGGAACAAATCACAAATATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGGGCATTGGTAAATTCTCTGAGGAACAAATCACAAATATCTCT  549

seq1  GCACTGGTTGATCTTATCCCAAGTATTCTAAAATTCCACAGAGTGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGGTTGATCTTATCCCAAGTATTCTAAAATTCCACAGAGTGGAAAG  599

seq1  ACAGGAAAGAATTC  614
      ||||||||||||||
seq2  ACAGGAAAGAATTC  613