BAC Information

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BAC

Clone NameB6Ng01-032D03
Chromosome11 (Build37)Y (Build37)
Map Location 3,709,059 - 3,710,178385,658 - 385,743
singlet/doubletsingletsinglet
Overlap geneOsbp2
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900
Downstream geneLOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032D03.bB6Ng01-032D03.g
ACCDH861603DH861604
length1,097193
definitionDH861603|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D03, 5' end.DH861604|Mus musculus domesticus DNA, BAC clone: B6Ng01-032D03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,709,059 - 3,710,178)(385,658 - 385,743)
sequence
gaattcaatttaaaatcaataaaactgtggtaagcacaagccaggccttg
tggcaagcatccgtaattccagagcttgggaagaaggcagaggggtcaaa
ggacacaattcttcatgaacccgaaggcagatgagagggacagtgtcaca
aggcggtcgggaagctgtagccagcaaacgcctgagtctgaaaggcaggt
ttcaggggagggcaggtgctgctccaagaagagacgccatgagtggcagc
catgagtgccctcagcctgagcatgacagcttacaggtgggtccatgacc
ccacaggggcatgacaggttacaggtgggtccgtgaccccacaggggcat
gacaggttacaggtgggtccgtgaccccacaggggcataacaggttacag
gtgggtccgtgaccccacaggggcatgacagcttacaggtgggtccgtga
ccccacaggggcatgacaggttacaggtgggtccgtgaccccacaggggc
atgacaggttacaggtgggtccgtgaccccacaggggcatgacaggttac
aggtgggtccgtgaccccacaggggcatgacaggttacaggtgggtccgt
gaccccacaggggcatgacaggttacaggtgggtctgtgaccccacaggg
gcataacaggttacaggtgggtccgtgaccccacaggggcatgacaggtt
acaggtgggtccgtgaccccacaggggcatgacaggttacaggtgggtcc
gtgactccacaggggcatgacaggttacaggtgggtccgtgaccccacag
gggcatgacaggttacaggtgggtccgtgaccccacagggaatgacaggt
tacaggtggatctgtgaccccacaggggcatgacagcttacaggtgggtc
cgtgaccccacaggggcatgacatcttacagtgggttcgtgaccccacag
gggcatgacagttacagtgggtccatgacccacagggcatgacgctacga
atggtccatgacccccagggcatgaagctacagtgggtctgtaacccaca
gggcatgacacttacagtggttctgaccccagggcatgaaagcttac
agactagagcctgctgatagtggcacacctttaatcccagcacttggagg
cagaggcaggcagatctctgagtctgaggtcagcctggtctatagagttc
taggacagtcagatctacacagagaaactctgtctcgaaatcaaacaaga
gatcagcatcactgaggcgaaatcttctgggaagtgttttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_3709059_3710178
seq2: B6Ng01-032D03.b_44_1140

seq1  GAATTCAATTTAAAATCAATAAAACTGTGGTAAGCACAAGCCAGGCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAAAATCAATAAAACTGTGGTAAGCACAAGCCAGGCCTTG  50

seq1  TGGCAAGCATCCGTAATTCCAGAGCTTGGGAAGAAGGCAGAGGGGTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCATCCGTAATTCCAGAGCTTGGGAAGAAGGCAGAGGGGTCAAA  100

seq1  GGACACAATTCTTCATGAACCCGAAGGCAGATGAGAGGGACAGTGTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACAATTCTTCATGAACCCGAAGGCAGATGAGAGGGACAGTGTCACA  150

seq1  AGGCGGTCGGGAAGCTGTAGCCAGCAAACGCCTGAGTCTGAAAGGCAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGTCGGGAAGCTGTAGCCAGCAAACGCCTGAGTCTGAAAGGCAGGT  200

seq1  TTCAGGGGAGGGCAGGTGCTGCTCCAAGAAGAGACGCCATGAGTGGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGGAGGGCAGGTGCTGCTCCAAGAAGAGACGCCATGAGTGGCAGC  250

seq1  CATGAGTGCCCTCAGCCTGAGCATGACAGCTTACAGGTGGGTCCATGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGCCCTCAGCCTGAGCATGACAGCTTACAGGTGGGTCCATGACC  300

seq1  CCACAGGGGCATGACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGGGCATGACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGCAT  350

seq1  GACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGCATAACAGGTTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGCATAACAGGTTACAG  400

seq1  GTGGGTCCGTGACCCCACAGGGGCATGACAGCTTACAGGTGGGTCCGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCCGTGACCCCACAGGGGCATGACAGCTTACAGGTGGGTCCGTGA  450

seq1  CCCCACAGGGGCATGACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGGGGCATGACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGC  500

seq1  ATGACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGCATGACAGGTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGCATGACAGGTTAC  550

seq1  AGGTGGGTCCGTGACCCCACAGGGGCATGACAGGTTACAGGTGGGTCCGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGTCCGTGACCCCACAGGGGCATGACAGGTTACAGGTGGGTCCGT  600

seq1  GACCCCACAGGGGCATGACAGGTTACAGGTGGGTCTGTGACCCCACAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCACAGGGGCATGACAGGTTACAGGTGGGTCTGTGACCCCACAGGG  650

seq1  GCATAACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGCATGACAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGCATGACAGGTT  700

seq1  ACAGGTGGGTCCGTGACCCCACAGGGGCATGACAGGTTACAGGTGGGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGGGTCCGTGACCCCACAGGGGCATGACAGGTTACAGGTGGGTCC  750

seq1  GTGACCCCACAGGGGCATGACAGGTTACAGGTGGGTCCGTGACCCCACAG  800
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCCACAGGGGCATGACAGGTTACAGGTGGGTCCGTGACCCCACAG  800

seq1  GGGCATGACAGGTTACAGGTGGGTCCGTGACCCCACAGGGGAATGACAGG  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGCATGACAGGTTACAGGTGGGTCCGTGACCCCACA-GGGAATGACAGG  849

seq1  TTACAGGTGGATCTGTGACCCCACAGGGGCATGACAGCTTACAGGTGGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTGGATCTGTGACCCCACAGGGGCATGACAGCTTACAGGTGGGT  899

seq1  CCGTGACCCCACAGGGGCATGACATCTTACAGGTGGGTCCGTGACCCCAC  950
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  CCGTGACCCCACAGGGGCATGACATCTTACA-GTGGGTTCGTGACCCCAC  948

seq1  AGGGGCATGACAGGTTACAGGTGGGTCCATGACCCCACAGGGGCATGACA  1000
      |||||||||||| |||||| |||||||||||| |||||| ||||||||| 
seq2  AGGGGCATGACA-GTTACA-GTGGGTCCATGA-CCCACA-GGGCATGAC-  993

seq1  GCTTACAGATGGGTCCATGACCCCACAGGGGCATGACAGCTTACAGGTGG  1050
      || ||| ||  ||||||||||||| || |||||||| ||| |||| ||||
seq2  GC-TAC-GAATGGTCCATGACCCC-CA-GGGCATGA-AGC-TACA-GTGG  1036

seq1  GTCTGTGACCCCACAGGGGCATGACAGCTTACAGGTGGGTCCATGACCCC  1100
      |||||| | |||||| |||||||||| |||||| |||| ||  |||||||
seq2  GTCTGT-AACCCACA-GGGCATGACA-CTTACA-GTGGTTC--TGACCCC  1080

seq1  ACAGGGGCATGACAGCTTAC  1120
      |   |||||||| |||||||
seq2  A---GGGCATGAAAGCTTAC  1097

seq1: chrY_385658_385743
seq2: B6Ng01-032D03.g_101_181 (reverse)

seq1  CTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATC  50
      ||||||| ||    ||||| |||||||||||| ||||  ||||||| |||
seq2  CTGTCCTAGA----ACTCTATAGACCAGGCTGACCTCAGACTCAGAGATC  46

seq1  TGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGG  86
      ||||||||||||||| || |||||||||||||||||
seq2  TGCCTGCCTCTGCCT-CCAAGTGCTGGGATTAAAGG  81