BAC Information

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BAC

Clone NameB6Ng01-032I04
Chromosome11 (Build37)
Map Location 120,358,588 - 120,496,109
singlet/doubletdoublet
Overlap geneSlc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg
Upstream geneA730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12
Downstream genePycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032I04.bB6Ng01-032I04.g
ACCDH861828DH861829
length642659
definitionDH861828|Mus musculus domesticus DNA, BAC clone: B6Ng01-032I04, 5' end.DH861829|Mus musculus domesticus DNA, BAC clone: B6Ng01-032I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,358,588 - 120,359,229)(120,495,453 - 120,496,109)
sequence
gaattctcaggaatggagagaagggctcttttaaggtggcctgtgggtag
gtgtgcagtgagggcttgcgactgccaggagggaggaccactgacagatt
acctccccagggcggatgtgccacgtttctgtgccagcccctcgatgtgc
tgaagactcgcctgatgaactccaagggcgagtaccaggtgaagactggg
ctgcaggctccagggttgggtggggttcctgccatttgtggccatgctta
ggggcctccccatcctggagatgggtctgcttcccactggggcataggag
cccagagacaaggccattgcccctgttcctttccagttgctcaactctgg
gtagcacttgcctggggggtggggctgtacttttccaaggccttggcctt
ggtttttacagaggaagccattcacacagtcagtagtaaaatctagccag
tgtcttgagagccaatctggctatctcaggagtctgtcaacttggccgat
gtagcttttagtcttctgtccctaagagctgctttcagtccgggcttcta
ccatgtcccctgcgcctggagggttcatccgggagctgccatgtctcctg
tgcctatgagtgagaggcctcctgcatcctttactgtttctt
gaattcatgcaggccatttctattcaaaccaccacaaggcataaggagta
attctctgtattctgagactctggctacagccagtgaaagataaaagctc
ccccccccccactccccaaagaaatacaatgtaaagaattactttttgag
gctgggtgtggtggcacatgtttttaatcccagcactagagaggcagagg
cagtcggatctctgagagtttggggccagcctggtctaaaccttgtctca
agaaaccaaatttgacacaaaggacacacacaggccccctccagcctgct
tacccccttttccttgtcacctatgttacagaacgagtcaccttttcacg
attcccagagaagacagggtcaaatagaacgttcagaacctcgaaatgaa
aacttgatccctcctactttccttcttttttactttttcaacagcagcga
gaagtctcacagaaaaagtagcagcagaatgcacccaaagtagtttcaaa
tgcggcagagaagggttgggcaaagtgcacaactcctacagtgcacgcac
actacccgaagagatggtccacggccgcaggtgaagcccctagcaccctc
cggagattagaatcattagtgagcgtcctccaagcctttcgtgtcatcgt
ggattagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_120358588_120359229
seq2: B6Ng01-032I04.b_36_677

seq1  GAATTCTCAGGAATGGAGAGAAGGGCTCTTTTAAGGTGGCCTGTGGGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGAATGGAGAGAAGGGCTCTTTTAAGGTGGCCTGTGGGTAG  50

seq1  GTGTGCAGTGAGGGCTTGCGACTGCCAGGAGGGAGGACCACTGACAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAGTGAGGGCTTGCGACTGCCAGGAGGGAGGACCACTGACAGATT  100

seq1  ACCTCCCCAGGGCGGATGTGCCACGTTTCTGTGCCAGCCCCTCGATGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCCAGGGCGGATGTGCCACGTTTCTGTGCCAGCCCCTCGATGTGC  150

seq1  TGAAGACTCGCCTGATGAACTCCAAGGGCGAGTACCAGGTGAAGACTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTCGCCTGATGAACTCCAAGGGCGAGTACCAGGTGAAGACTGGG  200

seq1  CTGCAGGCTCCAGGGTTGGGTGGGGTTCCTGCCATTTGTGGCCATGCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCTCCAGGGTTGGGTGGGGTTCCTGCCATTTGTGGCCATGCTTA  250

seq1  GGGGCCTCCCCATCCTGGAGATGGGTCTGCTTCCCACTGGGGCATAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTCCCCATCCTGGAGATGGGTCTGCTTCCCACTGGGGCATAGGAG  300

seq1  CCCAGAGACAAGGCCATTGCCCCTGTTCCTTTCCAGTTGCTCAACTCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGACAAGGCCATTGCCCCTGTTCCTTTCCAGTTGCTCAACTCTGG  350

seq1  GTAGCACTTGCCTGGGGGGTGGGGCTGTACTTTTCCAAGGCCTTGGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCACTTGCCTGGGGGGTGGGGCTGTACTTTTCCAAGGCCTTGGCCTT  400

seq1  GGTTTTTACAGAGGAAGCCATTCACACAGTCAGTAGTAAAATCTAGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTACAGAGGAAGCCATTCACACAGTCAGTAGTAAAATCTAGCCAG  450

seq1  TGTCTTGAGAGCCAATCTGGCTATCTCAGGAGTCTGTCAACTTGGCCGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGAGAGCCAATCTGGCTATCTCAGGAGTCTGTCAACTTGGCCGAT  500

seq1  GTAGCTTTTAGTCTTCTGTCCCTAAGAGCTGCTTTCAGTCCGGGCTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTTTTAGTCTTCTGTCCCTAAGAGCTGCTTTCAGTCCGGGCTTCTA  550

seq1  CCATGTCCCCTGCGCCTGGAGGGTTCATCCGGGAGCTGCCATGTCTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCCCCTGCGCCTGGAGGGTTCATCCGGGAGCTGCCATGTCTCCTG  600

seq1  TGCCTATGAGTGAGAGGCCTCCTGCATCCTTTACTGTTTCTT  642
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATGAGTGAGAGGCCTCCTGCATCCTTTACTGTTTCTT  642

seq1: chr11_120495453_120496109
seq2: B6Ng01-032I04.g_71_729 (reverse)

seq1  AACT-ATCCACGATGACACG-AAGGCTTGGAGGACGCTCACTAATGATTC  48
      |||| ||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACTAATCCACGATGACACGAAAGGCTTGGAGGACGCTCACTAATGATTC  50

seq1  TAATCTCCGGAGGGTGCTAGGGGCTTCACCTGCGGCCGTGGACCATCTCT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCCGGAGGGTGCTAGGGGCTTCACCTGCGGCCGTGGACCATCTCT  100

seq1  TCGGGTAGTGTGCGTGCACTGTAGGAGTTGTGCACTTTGCCCAACCCTTC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTAGTGTGCGTGCACTGTAGGAGTTGTGCACTTTGCCCAACCCTTC  150

seq1  TCTGCCGCATTTGAAACTACTTTGGGTGCATTCTGCTGCTACTTTTTCTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCGCATTTGAAACTACTTTGGGTGCATTCTGCTGCTACTTTTTCTG  200

seq1  TGAGACTTCTCGCTGCTGTTGAAAAAGTAAAAAAGAAGGAAAGTAGGAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTCTCGCTGCTGTTGAAAAAGTAAAAAAGAAGGAAAGTAGGAGG  250

seq1  GATCAAGTTTTCATTTCGAGGTTCTGAACGTTCTATTTGACCCTGTCTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGTTTTCATTTCGAGGTTCTGAACGTTCTATTTGACCCTGTCTTC  300

seq1  TCTGGGAATCGTGAAAAGGTGACTCGTTCTGTAACATAGGTGACAAGGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAATCGTGAAAAGGTGACTCGTTCTGTAACATAGGTGACAAGGAA  350

seq1  AAGGGGGTAAGCAGGCTGGAGGGGGCCTGTGTGTGTCCTTTGTGTCAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGTAAGCAGGCTGGAGGGGGCCTGTGTGTGTCCTTTGTGTCAAAT  400

seq1  TTGGTTTCTTGAGACAAGGTTTAGACCAGGCTGGCCCCAAACTCTCAGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTTGAGACAAGGTTTAGACCAGGCTGGCCCCAAACTCTCAGAG  450

seq1  ATCCGACTGCCTCTGCCTCTCTAGTGCTGGGATTAAAAACATGTGCCACC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGACTGCCTCTGCCTCTCTAGTGCTGGGATTAAAAACATGTGCCACC  500

seq1  ACACCCAGCCTCAAAAAGTAATTCTTTACATTGTATTTCTTTGGGGAGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGCCTCAAAAAGTAATTCTTTACATTGTATTTCTTTGGGGAGTG  550

seq1  GGGGGGGGGGAGCTTTTATCTTTCACTGGCTGTAGCCAGAGTCTCAGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGGAGCTTTTATCTTTCACTGGCTGTAGCCAGAGTCTCAGAAT  600

seq1  ACAGAGAATTACTCCTTATGCCTTGTGGTGGTTTGAATAGAAATGGCCTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAATTACTCCTTATGCCTTGTGGTGGTTTGAATAGAAATGGCCTG  650

seq1  CATGAATTC  657
      |||||||||
seq2  CATGAATTC  659