BAC Information

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BAC

Clone NameB6Ng01-032J02
Chromosome11 (Build37)
Map Location 83,514,027 - 83,691,111
singlet/doubletdoublet
Overlap geneOTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2
Upstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4
Downstream geneDdx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032J02.bB6Ng01-032J02.g
ACCDH861864DH861865
length8451,038
definitionDH861864|Mus musculus domesticus DNA, BAC clone: B6Ng01-032J02, 5' end.DH861865|Mus musculus domesticus DNA, BAC clone: B6Ng01-032J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,690,255 - 83,691,111)(83,514,027 - 83,515,067)
sequence
gaattcctaagatacccatttatcattgaaagaatgtgaacaatcccttg
gcttcaaattggggactcgagaaaccaaagcttcctaatgaattagcaca
gctccctcagtttctccacagaccttcttgccattctgcataccgtttct
ccctgaggataaagacccacatttgcatggggtttagcagattgaaagtc
taaagcttaggaaggaaaaaaaagctgatgaaaaatgaaagcaatttaaa
tactaggtgggtctcagttctagatcccaaagacctcaggtgggagcccc
attcacgacaggagagacacagacaggccccggaggacggcaaacactct
tgattcaaggggtaaagcattgaatgacacttcagggaggcccacaaact
ggttttcttatagaaatcaatgtaaacacgagcagccgggaaagaaggaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagaaagagaaagaaagaaagaaagagagaaagaaagagag
aaagaaagagagaaagaaagagagaaagaaagagagaaagaaagaaagaa
accaagtggttgagtcaaactgctagcgtgtacggtgccttcagccataa
cctccatgcagggaggggggtgggacggacacacatagccttccttcctc
acagctggtcttacgactatgtcctcatgtccgtactagagagctggttt
ctgcaagcaaacatcaggtggtttgttagatcacttcttctggcaggcaa
cgccgagccgaacgagctacctgacattggagaatctggcaggcc
gaattcctcattgactgcctattctcacaccaaaacgtctagctttactg
tgggtataaaatcgcttcatgaattcaccccagccagagccaacatgaag
acagccatcatctcaattctgacattgcctgtgatttcccttctcccaaa
agtaattgcgttaagaacttccaaagagaaaagagagaagactcaaagac
cacgaagacccggccacgagctagcatgaagaaatgccatgtgccaactg
cttgcctcaacttcaccccgtttggcctataagactaatcactctgcatt
ccttatctttctaagagtcagaggttggagagcagtctgagagaagctgg
cctagagatcagagtagctcttctagtttatagattttccttgcatttgg
gacttgggggagttcttacaaagagagcaaccaagagtctggtgtgataa
gagagtgtggctgtcattagagattttatggcatttcctaaaatgcaaag
gtctgtgatagtggaaggatctttctactgaggctgcacaggtggtgaag
ggggagaacactctcccaagatcagaaccaacagctgggcttaagagcag
aactggagctgatgaagctgtgggaagagccctggcatgcaaaggaggat
gtagagcaggttcgtcttctgcaggtgatgagtcttcagacatgtagcac
caatttaaaaccatgtctttctaacttgttcaggtttccataaacaccat
gatataatttcagaattcgaaaaacatggaacttgtcccaagtggccaac
acaaagtttttggaggttgttttgatgatagacaggagatgaaatcatgc
cccgatgaccaggaatgctgcaactttgaaggtggttgcatttgcgtatt
gctgagtatacatcacttaaggttagtacttcttgttgtttttctattgt
tgtaataggaccaggatcaaggacctattagatgaaacagttagtttgaa
ctttgaggttaaagaattgatccttgacatcatggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_83690255_83691111
seq2: B6Ng01-032J02.b_45_889 (reverse)

seq1  GGCCTGCCAGAGTTCTCCAATGTCAGGTAGGCTCTTTCGGCTGTGGCCTT  50
      ||||||||||| ||||||||||||||||| |||| |||||||  ||| ||
seq2  GGCCTGCCAGA-TTCTCCAATGTCAGGTA-GCTCGTTCGGCT-CGGCGTT  47

seq1  GGGCTCCAGGCTGAAGTGATCTTACAAACCACCTGATGTTTGCTTGCAGA  100
       | || |  |  |||||||||| |||||||||||||||||||||||||||
seq2  -GCCTGCCAGAAGAAGTGATCTAACAAACCACCTGATGTTTGCTTGCAGA  96

seq1  AACCAGCTCTCTGGTAAGGACATGAGGACATAGTCCTAAGACCAGCTCTG  150
      |||||||||||| ||| |||||||||||||||||| ||||||||||| ||
seq2  AACCAGCTCTCTAGTACGGACATGAGGACATAGTCGTAAGACCAGCTGTG  146

seq1  TGGAAGGAAGGCTATGGGTGTCCGTCCCACCCCCCTCCCTGCCTGGAGGT  200
       ||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  AGGAAGGAAGGCTATGTGTGTCCGTCCCACCCCCCTCCCTGCATGGAGGT  196

seq1  TATGGCTGAAGGCACCGTACACGCTAGCACTTCGACTCAACCACTTGGTT  250
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  TATGGCTGAAGGCACCGTACACGCTAGCAGTTTGACTCAACCACTTGGTT  246

seq1  TCTTTCTTTCTTTCTCTCTTTCTTTCTCTCTTTCTTTCTCTCTTTCTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTCTCTTTCTTTCTCTCTTTCTTTCTCTCTTTCTTTC  296

seq1  TCTCTTTCTTTCTCTCTTTCTTTCTTTCTTTCTCTTTCTTTCTTTCTTTC  350
      ||||||||||||||||||||||||||||||||        ||||||||||
seq2  TCTCTTTCTTTCTCTCTTTCTTTCTTTCTTTC--------TCTTTCTTTC  338

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  388

seq1  TCTTTCTTTCCTTCTTTCCCGGCTGCTCGTGTTTACATTGATTTCTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCCTTCTTTCCCGGCTGCTCGTGTTTACATTGATTTCTATAA  438

seq1  GAAAACCAGTTTGTGGGCCTCCCTGAAGTGTCATTCAATGCTTTACCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCAGTTTGTGGGCCTCCCTGAAGTGTCATTCAATGCTTTACCCCT  488

seq1  TGAATCAAGAGTGTTTGCCGTCCTCCGGGGCCTGTCTGTGTCTCTCCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAAGAGTGTTTGCCGTCCTCCGGGGCCTGTCTGTGTCTCTCCTGT  538

seq1  CGTGAATGGGGCTCCCACCTGAGGTCTTTGGGATCTAGAACTGAGACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAATGGGGCTCCCACCTGAGGTCTTTGGGATCTAGAACTGAGACCCA  588

seq1  CCTAGTATTTAAATTGCTTTCATTTTTCATCAGCTTTTTTTTCCTTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTATTTAAATTGCTTTCATTTTTCATCAGCTTTTTTTTCCTTCCTA  638

seq1  AGCTTTAGACTTTCAATCTGCTAAACCCCATGCAAATGTGGGTCTTTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTAGACTTTCAATCTGCTAAACCCCATGCAAATGTGGGTCTTTATC  688

seq1  CTCAGGGAGAAACGGTATGCAGAATGGCAAGAAGGTCTGTGGAGAAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGAGAAACGGTATGCAGAATGGCAAGAAGGTCTGTGGAGAAACTG  738

seq1  AGGGAGCTGTGCTAATTCATTAGGAAGCTTTGGTTTCTCGAGTCCCCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTGTGCTAATTCATTAGGAAGCTTTGGTTTCTCGAGTCCCCAAT  788

seq1  TTGAAGCCAAGGGATTGTTCACATTCTTTCAATGATAAATGGGTATCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCCAAGGGATTGTTCACATTCTTTCAATGATAAATGGGTATCTTA  838

seq1  GGAATTC  857
      |||||||
seq2  GGAATTC  845

seq1: chr11_83514027_83515067
seq2: B6Ng01-032J02.g_70_1107

seq1  GAATTCCTCATTGACTGCCTATTCTCACACCAAAACGTCTAGCTTTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATTGACTGCCTATTCTCACACCAAAACGTCTAGCTTTACTG  50

seq1  TGGGTATAAAATCGCTTCATGAATTCACCCCAGCCAGAGCCAACATGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATAAAATCGCTTCATGAATTCACCCCAGCCAGAGCCAACATGAAG  100

seq1  ACAGCCATCATCTCAATTCTGACATTGCCTGTGATTTCCCTTCTCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATCATCTCAATTCTGACATTGCCTGTGATTTCCCTTCTCCCAAA  150

seq1  AGTAATTGCGTTAAGAACTTCCAAAGAGAAAAGAGAGAAGACTCAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTGCGTTAAGAACTTCCAAAGAGAAAAGAGAGAAGACTCAAAGAC  200

seq1  CACGAAGACCCGGCCACGAGCTAGCATGAAGAAATGCCATGTGCCAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAAGACCCGGCCACGAGCTAGCATGAAGAAATGCCATGTGCCAACTG  250

seq1  CTTGCCTCAACTTCACCCCGTTTGGCCTATAAGACTAATCACTCTGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCAACTTCACCCCGTTTGGCCTATAAGACTAATCACTCTGCATT  300

seq1  CCTTATCTTTCTAAGAGTCAGAGGTTGGAGAGCAGTCTGAGAGAAGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTTTCTAAGAGTCAGAGGTTGGAGAGCAGTCTGAGAGAAGCTGG  350

seq1  CCTAGAGATCAGAGTAGCTCTTCTAGTTTATAGATTTTCCTTGCATTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGATCAGAGTAGCTCTTCTAGTTTATAGATTTTCCTTGCATTTGG  400

seq1  GACTTGGGGGAGTTCTTACAAAGAGAGCAACCAAGAGTCTGGTGTGATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGGGGAGTTCTTACAAAGAGAGCAACCAAGAGTCTGGTGTGATAA  450

seq1  GAGAGTGTGGCTGTCATTAGAGATTTTATGGCATTTCCTAAAATGCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTGGCTGTCATTAGAGATTTTATGGCATTTCCTAAAATGCAAAG  500

seq1  GTCTGTGATAGTGGAAGGATCTTTCTACTGAGGCTGCACAGGTGGTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGATAGTGGAAGGATCTTTCTACTGAGGCTGCACAGGTGGTGAAG  550

seq1  GGGGAGAACACTCTCCCAAGATCAGAACCAACAGCTGGGCTTAAGAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAACACTCTCCCAAGATCAGAACCAACAGCTGGGCTTAAGAGCAG  600

seq1  AACTGGAGCTGATGAAGCTGTGGGAAGAGCCCTGGCATGCAAAGGAGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGCTGATGAAGCTGTGGGAAGAGCCCTGGCATGCAAAGGAGGAT  650

seq1  GTAGAGCAGGTTCGTCTTCTGCAGGTGATGAGTCTTCAGACATGTAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCAGGTTCGTCTTCTGCAGGTGATGAGTCTTCAGACATGTAGCAC  700

seq1  CAATTTAAAACCATGTCTTTCTAACTTGTTCAGG-TTCCATAAACACCAT  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAATTTAAAACCATGTCTTTCTAACTTGTTCAGGTTTCCATAAACACCAT  750

seq1  GATAT-ATTTCAGAATTCGAAAAACATGGAACTTGTCCCAAGTGGCCAAC  798
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATTTCAGAATTCGAAAAACATGGAACTTGTCCCAAGTGGCCAAC  800

seq1  ACAAAG-TTTTGGAGATTGTTTTGATGAATAGACAGGAGATG-AATCATG  846
      |||||| |||||||| ||||||||||| |||||||||||||| |||||||
seq2  ACAAAGTTTTTGGAGGTTGTTTTGATG-ATAGACAGGAGATGAAATCATG  849

seq1  CCCCGATGACCAGGAATGCTGCAACATTGAAGGTGGTTGCATTTGCGTAT  896
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCCCGATGACCAGGAATGCTGCAACTTTGAAGGTGGTTGCATTTGCGTAT  899

seq1  TGCCTGAGTATACATCACTTTAAAGTTAGTAC-TCTTGTTTGTTTTTCTA  945
      || ||||||||||||||| |||| |||||||| ||||| |||||||||||
seq2  TG-CTGAGTATACATCAC-TTAAGGTTAGTACTTCTTG-TTGTTTTTCTA  946

seq1  TTGTTGTAATAAGACCAGGATCAAGGGACCTTATAGAAGAAACAGTTTAT  995
      ||||||||||| |||||||||||| ||||||  |||| ||||||| ||| 
seq2  TTGTTGTAATAGGACCAGGATCAA-GGACCTATTAGATGAAACAG-TTAG  994

seq1  TAGGAACTTTGAGGTTCAGAGAATGAATCCTTGACAATCATGGGGG  1041
      |  ||||||||||||| | |||||  ||||||||| ||||||||||
seq2  TTTGAACTTTGAGGTT-AAAGAATTGATCCTTGAC-ATCATGGGGG  1038