BAC Information

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BAC

Clone NameB6Ng01-032P05
Chromosome11 (Build37)16 (Build37)
Map Location 62,200,843 - 62,201,6854,758,338 - 4,758,904
singlet/doubletsingletsinglet
Overlap geneNcor1
Upstream geneLOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19
Downstream genePigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4, Tekt3, Pmp22, LOC433423, LOC100042799
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032P05.bB6Ng01-032P05.g
ACCDH862140DH862141
length843701
definitionDH862140|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P05, 5' end.DH862141|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,200,843 - 62,201,685)(4,758,338 - 4,758,904)
sequence
gaattcaatgatacaagtaatctttcctttatttttcactgttttaaaat
cccacacattttcctgctgcctgaaacctagacaaggtctgatttcagtt
ccctggtattagggagaaacaagcaactgcactcctgcactagctcagag
agtgggaaggcggcggcagctcccaactctgcagagattgtggcaaagac
cacagaaactgatagtcatgttactcaagtgcagaaaggacacttttcta
gaggttttctcattgttttgcatgctgatgaggttgtggtcgtagcaaag
aaggcagagatttaaatcttacttctgggcaatttgatggagacctatca
taacagtgagtggtttaaacaagaggtagttgaagttcctctgtttcagg
caaatatgtagagagccaccagtacatgtggttttaggatgtggtaggtt
ctaacctcaatttactcctgacaggctggctgcagcagaataggcccatt
caaaaggaaactttctctaagtgctttcaatagacccagcggctcttgta
tgggtttctttccttcagaacggatactcacagtcaaaaaaacaagtttc
atttagctaggcaaggtcctcctagcatgaaataagatattctctacaaa
taaaaaaataaaaagccaggcgtggtggcacacgccttaatcccagaact
cgggaggcagaggcaggcggatttctgagttcgaggccagcctggtctac
aaagtgagttccagaacagccagggctacacagagaaaccctgtctcgaa
aaaccgaaaaaaaaaaaaaaattcaaagtaaaaaaaataaata
gaattcatgtaagagtggaaggggagaatcactccacaaggctgtcctca
accttcacacatatggcatgacctatatatacataccctcaccacaaaca
taaaaaatacatatagacaacagatacacacacacacacactatacaggt
gtatgtatgtatatgtggggtgctttattcagacaggatttctggtttca
ttgtgtagccctagttgtcctggaacttgctctatagaccaggctgtcca
caaactcacaaagatccacctgtctctgttccccaagtgctgagattaaa
ggtgtgggccaccactgcctggtaaaaataacttttttttaagttaatag
tacttaaaccagagatgtcagggctggagagatggctctgcggttaagag
cacttatggcttttccagaggatctgggttcagtacctagcatccatcta
gaggttcacattgtctgaaactccagttccagaggatccaatgccctttc
ctggtcttcttgggcaccacatacagagtgattcatagacatattcagga
aaaacaactgtacaaataaaggttaaaaaaaaaaaaaaaagaggaacctt
tgaccataagaagagtatggagatgggctagagagatggctcaatggtta
aagagcactgactgctcttccagaggtcctgagttcaattcccagcaacc
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_62200843_62201685
seq2: B6Ng01-032P05.b_43_885

seq1  GAATTCAATGATACAAGTAATCTTTCCTTTATTTTTCACTGTTTTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGATACAAGTAATCTTTCCTTTATTTTTCACTGTTTTAAAAT  50

seq1  CCCACACATTTTCCTGCTGCCTGAAACCTAGACAAGGTCTGATTTCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACATTTTCCTGCTGCCTGAAACCTAGACAAGGTCTGATTTCAGTT  100

seq1  CCCTGGTATTAGGGAGAAACAAGCAACTGCACTCCTGCACTAGCTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTATTAGGGAGAAACAAGCAACTGCACTCCTGCACTAGCTCAGAG  150

seq1  AGTGGGAAGGCGGCGGCAGCTCCCAACTCTGCAGAGATTGTGGCAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAAGGCGGCGGCAGCTCCCAACTCTGCAGAGATTGTGGCAAAGAC  200

seq1  CACAGAAACTGATAGTCATGTTACTCAAGTGCAGAAAGGACACTTTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAACTGATAGTCATGTTACTCAAGTGCAGAAAGGACACTTTTCTA  250

seq1  GAGGTTTTCTCATTGTTTTGCATGCTGATGAGGTTGTGGTCGTAGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTCTCATTGTTTTGCATGCTGATGAGGTTGTGGTCGTAGCAAAG  300

seq1  AAGGCAGAGATTTAAATCTTACTTCTGGGCAATTTGATGGAGACCTATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGATTTAAATCTTACTTCTGGGCAATTTGATGGAGACCTATCA  350

seq1  TAACAGTGAGTGGTTTAAACAAGAGGTAGTTGAAGTTCCTCTGTTTCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGAGTGGTTTAAACAAGAGGTAGTTGAAGTTCCTCTGTTTCAGG  400

seq1  CAAATATGTAGAGAGCCACCAGTACATGTGGTTTTAGGATGTGGTAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGTAGAGAGCCACCAGTACATGTGGTTTTAGGATGTGGTAGGTT  450

seq1  CTAACCTCAATTTACTCCTGACAGGCTGGCTGCAGCAGAATAGGCCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTCAATTTACTCCTGACAGGCTGGCTGCAGCAGAATAGGCCCATT  500

seq1  CAAAAGGAAACTTTCTCTAAGTGCTTTCAATAGACCCAGCGGCTCTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGAAACTTTCTCTAAGTGCTTTCAATAGACCCAGCGGCTCTTGTA  550

seq1  TGGGTTTCTTTCCTTCAGAACGGATACTCACAGTCAAAAAAACAAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTCTTTCCTTCAGAACGGATACTCACAGTCAAAAAAACAAGTTTC  600

seq1  ATTTAGCTAGGCAAGGTCCTCCTAGCATGAAATAAGATATTCTCTACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTAGGCAAGGTCCTCCTAGCATGAAATAAGATATTCTCTACAAA  650

seq1  TAAAAAAATAAAAAGCCAGGCGTGGTGGCACACGCCTTAATCCCAGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAAAAAGCCAGGCGTGGTGGCACACGCCTTAATCCCAGAACT  700

seq1  CGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC  750

seq1  AAAGTGAGTTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAGTTCCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA  800

seq1  AAACCGAAAAAAAAAAAAAAATTCAAAGTAAAAAAAATAAATA  843
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGAAAAAAAAAAAAAAATTCAAAGTAAAAAAAATAAATA  843

seq1: chr16_4758338_4758904
seq2: B6Ng01-032P05.g_351_770 (reverse)

seq1  TGGTTGCTGGGATTTGAACTCAGGACCTCTGAAAGAACAGTCAGTGCTCT  50
      |||||||||||| |||||||||||||||||| |||| |||||||||||||
seq2  TGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCT  50

seq1  TAACCATTGAGCCATAACCATTGAGCCATCTCTCTAGCCCAGCTATGAGC  100
      |             ||||||||||||||||||||||||||| ||     |
seq2  T-------------TAACCATTGAGCCATCTCTCTAGCCCATCT-----C  82

seq1  AATTTTAAAGAAGTATATCCTAGAGTAAACATGTCAGCAGGGGATTTGGA  150
       ||        | | | || ||  || ||    ||  |      |||   
seq2  CAT--------ACTCT-TCTTATGGTCAAAGGTTCCTC------TTT---  114

seq1  AATGTATCTTTTCAGAGATTGGAGATAATTGTTACCTCTTAGTGTTACTC  200
        | | | ||||   |  ||     || ||||   |  ||  | || || 
seq2  -TTTTTTTTTTTTTAACCTT-----TATTTGT--ACAGTTGTTTTTCCTG  156

seq1  TATATG---GTCAGTCCCT-TG-AGGAATGGTG-ATTAGGTGA-CAGGAA  243
       |||||    | | || || || | |  |||||    ||  || ||||||
seq2  AATATGTCTATGAATCACTCTGTATG--TGGTGCCCAAGAAGACCAGGAA  204

seq1  TGGACACAAGTTGTCTCCCTTAGCAGTAGCCTATGATGGTTGAAAGTGAT  293
       || ||    |||  |||  | | | | |  | | |     || | ||  
seq2  AGGGCA----TTGGATCCTCTGGAACTGGAGTTTCA-----GACAATG--  243

seq1  ACTGAGCCTTCCCAGGAAGGGAGCTTTCAGACACCTTAAGGACTCAG-TA  342
        ||| |||   |  || ||  |||   ||  ||     | || ||| | 
seq2  --TGAACCT---CTAGATGGATGCT---AGGTAC----TGAACCCAGATC  281

seq1  TTCTTTAAAGGGGATAAGTAAATTGTACTTGGAGTTTAGAAACCTTAAAA  392
       |||  ||| |  |||||     ||  |||          ||||      
seq2  CTCTGGAAAAGCCATAAG-----TGCTCTT----------AACC------  310

seq1  TGATAGACAGAAGGCTATTAGTATTATTTTATTATCTTAAAAATACATAT  442
             ||||  || |               | |||             
seq2  ------GCAGA--GCCA---------------TCTCT-------------  324

seq1  TGTAAACTAGATGTGGTGATACATGTGTGTGATCTAGAAGGCTGAAGCAA  492
            | ||   ||     |||| | |           || | ||| | 
seq2  ------CCAGCCCTG-----ACATCTCT-----------GGTTTAAGTA-  351

seq1  GGCTGGAGGATTGAGATTGAAAA----TAATCTTGCCGGGTGGTGGTGGC  538
        ||     ||| |  |  ||||    || | || || ||  |||||   
seq2  --CT-----ATTAACTTAAAAAAAAGTTATTTTTACCAGGCAGTGGT---  391

seq1  GGCATACGCCTTTAATCCCAGCACTTGGG  567
      |||  || ||||||||| |||||||||||
seq2  GGCCCACACCTTTAATCTCAGCACTTGGG  420