BAC Information

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BAC

Clone NameB6Ng01-032P13
Chromosome11 (Build37)1 (Build37)
Map Location 116,438,030 - 116,438,06011,516,408 - 11,517,439
singlet/doubletsingletsinglet
Overlap geneUbe2o
Upstream geneNup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1
Downstream geneAanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b, LOC100042036, Sec14l1, Sept9, EG667423
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032P13.bB6Ng01-032P13.g
ACCDH862153DH862154
length351,028
definitionDH862153|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P13, 5' end.DH862154|Mus musculus domesticus DNA, BAC clone: B6Ng01-032P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(116,438,030 - 116,438,060)(11,516,408 - 11,517,439)
sequence
gaattctctctcttttttttttttttttttttttt
gaattcctggagctccttggctaactaacttcagcgtttttgtttgtttg
tttgtttgtttgtttgttgtttttttttccctgaagagggctctctgaaa
cccagaacttggtcccggttaggaataggaagaataattcagggagaatt
aggtgcaagtggatgcttttttatcattggaaagaaataaaatgaatata
gaaaaaagtgacagctaatatgaccaaagaaaagcagaatactgagaatt
gaagaaaaattagaacccgaatatcctctctctctctctctgtctctctc
tctctcttgaggattcttctcctcgtgtagagtttgctccccctcctcca
gctccaattttgtctgctcttaaaacccacccaactaatgcagtttctga
taacatagaaacttttttgctgattcactttatctcttactgagattatt
aaagaactttcttgctctcctgataagagaattaattcctttcaaattac
agtacagatatctgatgtaagaggctctgcatagtgtccaggagatgcat
gcacacatacagggctgtagagatggctcagcagaaaagcactcagcaga
agagcactgactgctcttctgaaggtcctgagttcaaatcccagcaacca
catggtaattgagatgataggagacatgaggggattttttttcctagtta
ataaaatgcctgattgtaataacctggcaaaaagagttagaaattagatt
tccaatccatttaaaactgttaaggattttaagcaggctcaatatggatc
aactgctctttttacactgtctgtcctggatttctgtttctgaggaaatc
ttcttccttctggcaggaggatctgaagcaaagcttgtctaaagtgaata
tttactgtggaagaagactgattacttgcaattatgtcaggacaaagcta
tagaaacctacaaaattatgtgcccatacttttgaatgttataggacagg
catggatagagtgatactcatgatggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_116438030_116438060
seq2: B6Ng01-032P13.b_48_78

seq1  TCTCTCTCTTTTTTTTTTTTTTTTTTTTTTT  31
      |||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTTTTTTTTTTTTTTTTTTTTTT  31

seq1: chr1_11516408_11517439
seq2: B6Ng01-032P13.g_68_1095 (reverse)

seq1  AGCCATCATTGAGTATCACTCTATACATGCCTTGTCCTATAACATTTCAA  50
      |||||||| ||||||||||||||| |||||| |||||||||||| |||||
seq2  AGCCATCA-TGAGTATCACTCTATCCATGCC-TGTCCTATAACA-TTCAA  47

seq1  AAGTATGGGCACATAATTTTGTAGGTTTCTAATAGCTTTGTCCTGACATA  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGTATGGGCACATAATTTTGTAGGTTTCT-ATAGCTTTGTCCTGACATA  96

seq1  ATTGCAAGTAATCAGTCTTCTTCCACAGTAAATATTCACTTTTAGACAAG  150
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATTGCAAGTAATCAGTCTTCTTCCACAGTAAATATTCAC-TTTAGACAAG  145

seq1  CTTTGCTTCAGATCCTCCTGCCAGAAGGAAGAAGAATTTCCTCAGAAACA  200
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTGCTTCAGATCCTCCTGCCAGAAGGAAGAAG-ATTTCCTCAGAAACA  194

seq1  G-AATCCAGGACAGACAGTGTAAAAAGAGCAGTTGATCCATATTGAGCCT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCAGGACAGACAGTGTAAAAAGAGCAGTTGATCCATATTGAGCCT  244

seq1  GCTTAAAATCCTTAACAGTTTTAAATGGATTGGAAATCTAATTTCTAACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAATCCTTAACAGTTTTAAATGGATTGGAAATCTAATTTCTAACT  294

seq1  CTTTTTGCCAGGTTATTACAATCAGGCATTTTATTAACTAGG-AAAAAAA  348
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTTTTGCCAGGTTATTACAATCAGGCATTTTATTAACTAGGAAAAAAAA  344

seq1  TCCCCTCATGTCTCCTATCATCTCAATTACCATGTGGTTGCTGGGATTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCATGTCTCCTATCATCTCAATTACCATGTGGTTGCTGGGATTTG  394

seq1  AACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTCTGCTGAGTGCTTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTCTGCTGAGTGCTTTT  444

seq1  CTGCTGAGCCATCTCTACAGCCCTGTATGTGTGCATGCATCTCCTGGACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGCCATCTCTACAGCCCTGTATGTGTGCATGCATCTCCTGGACA  494

seq1  CTATGCAGAGCCTCTTACATCAGATATCTGTACTGTAATTTGAAAGGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCAGAGCCTCTTACATCAGATATCTGTACTGTAATTTGAAAGGAAT  544

seq1  TAATTCTCTTATCAGGAGAGCAAGAAAGTTCTTTAATAATCTCAGTAAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCTTATCAGGAGAGCAAGAAAGTTCTTTAATAATCTCAGTAAGA  594

seq1  GATAAAGTGAATCAGCAAAAAAGTTTCTATGTTATCAGAAACTGCATTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTGAATCAGCAAAAAAGTTTCTATGTTATCAGAAACTGCATTAG  644

seq1  TTGGGTGGGTTTTAAGAGCAGACAAAATTGGAGCTGGAGGAGGGGGAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGGTTTTAAGAGCAGACAAAATTGGAGCTGGAGGAGGGGGAGCA  694

seq1  AACTCTACACGAGGAGAAGAATCCTCAAGAGAGAGAGAGAGACAGAGAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTACACGAGGAGAAGAATCCTCAAGAGAGAGAGAGAGACAGAGAGA  744

seq1  GAGAGAGAGGATATTCGGGTTCTAATTTTTCTTCAATTCTCAGTATTCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGGATATTCGGGTTCTAATTTTTCTTCAATTCTCAGTATTCTG  794

seq1  CTTTTCTTTGGTCATATTAGCTGTCACTTTTTTCTATATTCATTTTATTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTGGTCATATTAGCTGTCACTTTTTTCTATATTCATTTTATTT  844

seq1  CTTTCCAATGATAAAAAAGCATCCACTTGCACCTAATTCTCCCTGAATTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAATGATAAAAAAGCATCCACTTGCACCTAATTCTCCCTGAATTA  894

seq1  TTCTTCCTATTCCTAACCGGGACCAAGTTCTGGGTTTCAGAGAGCCCTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTATTCCTAACCGGGACCAAGTTCTGGGTTTCAGAGAGCCCTCT  944

seq1  TCAGGGAAAAAAAAACAACAAACAAACAAACAAACAAACAAACAAAAACG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAAAAAAAAACAACAAACAAACAAACAAACAAACAAACAAAAACG  994

seq1  CTGAAGTTAGTTAGCCAAGGAGCTCCAGGAATTC  1032
      ||||||||||||||||||||||||||||||||||
seq2  CTGAAGTTAGTTAGCCAAGGAGCTCCAGGAATTC  1028